Thaps_bicluster_0027 Residual: 0.38
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0027 0.38 Thalassiosira pseudonana
" class="views-fluidgrid-wrapper clear-block">
Displaying 1 - 52 of 52
" class="views-fluidgrid-wrapper clear-block">
10098 hypothetical protein

10098 - hypothetical protein

GO Terms:

GO:0000074

CD Domains:

Go To Gene Page:

10098
10320 hypothetical protein

10320 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10320
10358 hypothetical protein

10358 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10358
10424 hypothetical protein

10424 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10424
10452 hypothetical protein

10452 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10452
10604 NADB_Rossmann superfamily

10604 - NADB_Rossmann superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

10604
1071 (Tp_HSF_1.3k) regulator [Rayko]

1071 - (Tp_HSF_1.3k) regulator [Rayko]

GO Terms:

NA

CD Domains:

Go To Gene Page:

1071
1075 mTERF superfamily

1075 - mTERF superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

1075
10964 hypothetical protein

10964 - hypothetical protein

GO Terms:

GO:0005215, GO:0006810

CD Domains:

Go To Gene Page:

10964
11436 hypothetical protein

11436 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11436
11637 PhoD

11637 - PhoD

GO Terms:

GO:0008152

CD Domains:

Go To Gene Page:

11637
11691 hypothetical protein

11691 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11691
11721 hypothetical protein

11721 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11721
12047 hypothetical protein

12047 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12047
12137 hypothetical protein

12137 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12137
13877 vWFA superfamily

13877 - vWFA superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

13877
20845 Tic22 superfamily

20845 - Tic22 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

20845
22939 hypothetical protein

22939 - hypothetical protein

GO Terms:

GO:0005576, GO:0006030, GO:0008061

CD Domains:

Go To Gene Page:

22939
23402 SPC25

23402 - SPC25

GO Terms:

GO:0005787, GO:0005792, GO:0006465, GO:0009003, GO:0016021, GO:0008233, GO:0008234

CD Domains:

Go To Gene Page:

23402
23886 hypothetical protein

23886 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23886
24300 hypothetical protein

24300 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24300
2505 Peptidase_C14

2505 - Peptidase_C14

GO Terms:

GO:0006508, GO:0030693

CD Domains:

Go To Gene Page:

2505
261556 AMN1 superfamily

261556 - AMN1 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

261556
263788 amino acid/polyamine transporter

263788 - amino acid/polyamine transporter

GO Terms:

GO:0005279, GO:0006865, GO:0016020

CD Domains:

Go To Gene Page:

263788
264260 kinase like protein

264260 - kinase like protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

264260
268980 COG0428

268980 - COG0428

GO Terms:

NA

CD Domains:

Go To Gene Page:

268980
2735 hypothetical protein

2735 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2735
2916 TENA_THI-4 superfamily

2916 - TENA_THI-4 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

2916
30977 (PDF1) Pep_deformylase

30977 - (PDF1) Pep_deformylase

GO Terms:

GO:0005506, GO:0006412, GO:0042586, GO:0008463

CD Domains:

Go To Gene Page:

30977
32003 Isoamyl_acetate_hydrolase_like

32003 - Isoamyl_acetate_hydrolase_like

GO Terms:

GO:0003824, GO:0004518, GO:0016788, GO:0042578

CD Domains:

Go To Gene Page:

32003
3244 hypothetical protein

3244 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3244
32481 HDc superfamily

32481 - HDc superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

32481
33500 TerC superfamily

33500 - TerC superfamily

GO Terms:

GO:0016021

CD Domains:

Go To Gene Page:

33500
34554 (psbW) PLN00039

34554 - (psbW) PLN00039

GO Terms:

GO:0009654, GO:0015979, GO:0016020

CD Domains:

Go To Gene Page:

34554
36897 S_TKc

36897 - S_TKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

36897
37539 cpn10

37539 - cpn10

GO Terms:

GO:0005524, GO:0006457

CD Domains:

Go To Gene Page:

37539
3824 hypothetical protein

3824 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3824
5210 hypothetical protein

5210 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5210
5729 hypothetical protein

5729 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5729
5757 Sulfotransfer_1

5757 - Sulfotransfer_1

GO Terms:

GO:0008146, GO:0004304

CD Domains:

Go To Gene Page:

5757
5793 ENDO3c superfamily

5793 - ENDO3c superfamily

GO Terms:

GO:0009654, GO:0019898, GO:0042549

CD Domains:

Go To Gene Page:

5793
7229 (tpi) TIM

7229 - (tpi) TIM

GO Terms:

GO:0004807, GO:0008152

CD Domains:

Go To Gene Page:

7229
7424 hypothetical protein

7424 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7424
8044 COG1357

8044 - COG1357

GO Terms:

NA

CD Domains:

Go To Gene Page:

8044
8249 hypothetical protein

8249 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8249
8809 hypothetical protein

8809 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8809
8853 hypothetical protein

8853 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8853
9230 hypothetical protein

9230 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9230
9278 hypothetical protein

9278 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9278
9308 hypothetical protein

9308 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9308
9423 hypothetical protein

9423 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9423
ThpsCt016 (trnS(uga))

ThpsCt016 - (trnS(uga))

GO Terms:

NA

CD Domains:

Go To Gene Page:

ThpsCt016
GO ID Go Term p-value q-value Cluster
GO:0006865 amino acid transport 0.080847 1 Thaps_bicluster_0027
GO:0006030 chitin metabolism 0.059173 1 Thaps_bicluster_0027
GO:0008152 metabolism 0.332159 1 Thaps_bicluster_0027
GO:0015979 photosynthesis 0.0370252 1 Thaps_bicluster_0027
GO:0042549 photosystem II stabilization 0.0115308 1 Thaps_bicluster_0027
GO:0006468 protein amino acid phosphorylation 0.468128 1 Thaps_bicluster_0027
GO:0006412 protein biosynthesis 0.387111 1 Thaps_bicluster_0027
GO:0006457 protein folding 0.317461 1 Thaps_bicluster_0027
GO:0006508 proteolysis and peptidolysis 0.577098 1 Thaps_bicluster_0027
GO:0000074 regulation of cell cycle 0.16053 1 Thaps_bicluster_0027
Log in to post comments