Thaps_bicluster_0036 Residual: 0.41
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0036 0.41 Thalassiosira pseudonana
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Displaying 1 - 53 of 53
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10391 hypothetical protein

10391 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10391
10831 hypothetical protein

10831 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10831
10991 hypothetical protein

10991 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10991
11375 NOX_Duox_like_FAD_NADP

11375 - NOX_Duox_like_FAD_NADP

GO Terms:

GO:0006118, GO:0016020, GO:0016491

CD Domains:

Go To Gene Page:

11375
1150 RsuA

1150 - RsuA

GO Terms:

GO:0004730, GO:0003723, GO:0006396, GO:0009982

CD Domains:

Go To Gene Page:

1150
11695 hypothetical protein

11695 - hypothetical protein

GO Terms:

GO:0031177

CD Domains:

Go To Gene Page:

11695
11869 hypothetical protein

11869 - hypothetical protein

GO Terms:

GO:0008152, GO:0016491, GO:0004842

CD Domains:

Go To Gene Page:

11869
12133 Trypan_PARP

12133 - Trypan_PARP

GO Terms:

GO:0004339

CD Domains:

Go To Gene Page:

12133
21801 hypothetical protein

21801 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21801
21847 NAD_binding_8 superfamily

21847 - NAD_binding_8 superfamily

GO Terms:

GO:0006118, GO:0016491, GO:0016117, GO:0016705, GO:0050660

CD Domains:

Go To Gene Page:

21847
2194 TDP2

2194 - TDP2

GO Terms:

NA

CD Domains:

Go To Gene Page:

2194
24141 FH2 superfamily

24141 - FH2 superfamily

GO Terms:

GO:0003677, GO:0005634, GO:0003779, GO:0016043

CD Domains:

Go To Gene Page:

24141
24546 hypothetical protein

24546 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24546
25874 hypothetical protein

25874 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25874
260980 Motor_domain superfamily

260980 - Motor_domain superfamily

GO Terms:

GO:0003777, GO:0005524, GO:0005875, GO:0007018

CD Domains:

Go To Gene Page:

260980
261844 PLN02270

261844 - PLN02270

GO Terms:

GO:0003824, GO:0008152, GO:0004630

CD Domains:

Go To Gene Page:

261844
262925 FAA1

262925 - FAA1

GO Terms:

GO:0004197, GO:0006508, GO:0003824, GO:0008152, GO:0004467

CD Domains:

Go To Gene Page:

262925
263911 HA

263911 - HA

GO Terms:

NA

CD Domains:

Go To Gene Page:

263911
268262 ALDH_F5_SSADH_GabD

268262 - ALDH_F5_SSADH_GabD

GO Terms:

GO:0008152, GO:0016491, GO:0004777

CD Domains:

Go To Gene Page:

268262
268560 FNR_like superfamily

268560 - FNR_like superfamily

GO Terms:

GO:0005489, GO:0006118, GO:0016491, GO:0010181, GO:0003958

CD Domains:

Go To Gene Page:

268560
269100 S_TKc

269100 - S_TKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

269100
269487 hypothetical protein

269487 - hypothetical protein

GO Terms:

GO:0003824

CD Domains:

Go To Gene Page:

269487
269660 hypothetical protein

269660 - hypothetical protein

GO Terms:

GO:0003677, GO:0006306

CD Domains:

Go To Gene Page:

269660
31622 MATE_like superfamily

31622 - MATE_like superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

31622
3439 hypothetical protein

3439 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3439
34795 Cas1_AcylT superfamily

34795 - Cas1_AcylT superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

34795
34851 NAD_kinase superfamily

34851 - NAD_kinase superfamily

GO Terms:

GO:0003951, GO:0008152

CD Domains:

Go To Gene Page:

34851
35637 PDEase_I

35637 - PDEase_I

GO Terms:

GO:0004114, GO:0007165, GO:0003824

CD Domains:

Go To Gene Page:

35637
36553 RJL

36553 - RJL

GO Terms:

GO:0005525, GO:0007264, GO:0015031, GO:0003924, GO:0003925

CD Domains:

Go To Gene Page:

36553
37054 ascorbate_peroxidase

37054 - ascorbate_peroxidase

GO Terms:

GO:0004601, GO:0006979, GO:0004130

CD Domains:

Go To Gene Page:

37054
37232 45_DOPA_Dioxygenase

37232 - 45_DOPA_Dioxygenase

GO Terms:

GO:0006118, GO:0006725, GO:0008198, GO:0016491

CD Domains:

Go To Gene Page:

37232
38139 Chloroa_b-bind

38139 - Chloroa_b-bind

GO Terms:

GO:0009765, GO:0016020

CD Domains:

Go To Gene Page:

38139
4923 hypothetical protein

4923 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4923
5420 hypothetical protein

5420 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5420
5510 Glyco_transf_10 superfamily

5510 - Glyco_transf_10 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

5510
5582 hypothetical protein

5582 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5582
5728 HA

5728 - HA

GO Terms:

NA

CD Domains:

Go To Gene Page:

5728
5852 hypothetical protein

5852 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5852
5920 NA

5920 - NA

GO Terms:

GO:0005489, GO:0006118, GO:0045454

CD Domains:

Go To Gene Page:

5920
6031 hypothetical protein

6031 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6031
6032 Ubox

6032 - Ubox

GO Terms:

GO:0000151, GO:0004842, GO:0016567

CD Domains:

Go To Gene Page:

6032
6729 FUSC_2

6729 - FUSC_2

GO Terms:

NA

CD Domains:

Go To Gene Page:

6729
6820 Glycosyltransferase_GTB_type superfamily

6820 - Glycosyltransferase_GTB_type superfamily

GO Terms:

GO:0009058

CD Domains:

Go To Gene Page:

6820
7523 hypothetical protein

7523 - hypothetical protein

GO Terms:

GO:0008757, GO:0008168

CD Domains:

Go To Gene Page:

7523
7683 DUF3395 superfamily

7683 - DUF3395 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

7683
8190 hypothetical protein

8190 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8190
8237 hypothetical protein

8237 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8237
8244 Lipase superfamily

8244 - Lipase superfamily

GO Terms:

GO:0004806, GO:0006629, GO:0003824

CD Domains:

Go To Gene Page:

8244
8255 WD40 superfamily

8255 - WD40 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

8255
8295 hypothetical protein

8295 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8295
9184 hypothetical protein

9184 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9184
GO ID Go Term p-value q-value Cluster
GO:0006779 porphyrin biosynthetic process 0.00620219 1 Thaps_bicluster_0036
GO:0006725 aromatic compound metabolism 0.00795384 1 Thaps_bicluster_0036
GO:0006118 electron transport 0.0222662 1 Thaps_bicluster_0036
GO:0016043 cell organization and biogenesis 0.0306412 1 Thaps_bicluster_0036
GO:0016117 carotenoid biosynthesis 0.0485881 1 Thaps_bicluster_0036
GO:0045454 cell redox homeostasis 0.0544987 1 Thaps_bicluster_0036
GO:0008152 metabolism 0.102461 1 Thaps_bicluster_0036
GO:0006979 response to oxidative stress 0.139011 1 Thaps_bicluster_0036
GO:0006629 lipid metabolism 0.165523 1 Thaps_bicluster_0036
GO:0006306 DNA methylation 0.165523 1 Thaps_bicluster_0036
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