Thaps_bicluster_0039 Residual: 0.52
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0039 0.52 Thalassiosira pseudonana
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Displaying 1 - 39 of 39
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10850 ERG3

10850 - ERG3

GO Terms:

GO:0003824, GO:0008152

CD Domains:

Go To Gene Page:

10850
1093 hypothetical protein

1093 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1093
11144 hypothetical protein

11144 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11144
12084 hypothetical protein

12084 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12084
15610 KISc

15610 - KISc

GO Terms:

GO:0003777, GO:0005524, GO:0005875, GO:0007018

CD Domains:

Go To Gene Page:

15610
22658 DUF1800 superfamily

22658 - DUF1800 superfamily

GO Terms:

GO:0004629, GO:0007165, GO:0007242, GO:0004339

CD Domains:

Go To Gene Page:

22658
24856 hypothetical protein

24856 - hypothetical protein

GO Terms:

GO:0005524, GO:0015986, GO:0016469, GO:0046933, GO:0046961

CD Domains:

Go To Gene Page:

24856
24989 hypothetical protein

24989 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24989
260919 HP_PGM_like

260919 - HP_PGM_like

GO Terms:

GO:0003824, GO:0008152, GO:0004619, GO:0046537, GO:0046538

CD Domains:

Go To Gene Page:

260919
262283 AFD_class_I superfamily

262283 - AFD_class_I superfamily

GO Terms:

GO:0003824, GO:0008152, GO:0016207

CD Domains:

Go To Gene Page:

262283
262734 PLDc_PGS1_euk_1

262734 - PLDc_PGS1_euk_1

GO Terms:

GO:0003824, GO:0008152, GO:0003882

CD Domains:

Go To Gene Page:

262734
263944 FH2 superfamily

263944 - FH2 superfamily

GO Terms:

GO:0003779, GO:0016043

CD Domains:

Go To Gene Page:

263944
264725 Peptidase_M8 superfamily

264725 - Peptidase_M8 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

264725
264868 DEXDc

264868 - DEXDc

GO Terms:

GO:0005524, GO:0008026, GO:0003676, GO:0004386

CD Domains:

Go To Gene Page:

264868
264896 CFTR_protein

264896 - CFTR_protein

GO Terms:

GO:0005524, GO:0006810, GO:0016021, GO:0042626, GO:0016887, GO:0000166, GO:0017111

CD Domains:

Go To Gene Page:

264896
268043 hypothetical protein

268043 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

268043
27236 TPR

27236 - TPR

GO Terms:

NA

CD Domains:

Go To Gene Page:

27236
3111 hypothetical protein

3111 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3111
3149 Gst

3149 - Gst

GO Terms:

NA

CD Domains:

Go To Gene Page:

3149
3184 H4

3184 - H4

GO Terms:

GO:0000786, GO:0003677, GO:0005634, GO:0006334, GO:0007001

CD Domains:

Go To Gene Page:

3184
35229 H4

35229 - H4

GO Terms:

GO:0000786, GO:0003677, GO:0005634, GO:0006334, GO:0007001

CD Domains:

Go To Gene Page:

35229
35330 H4

35330 - H4

GO Terms:

GO:0000786, GO:0003677, GO:0005634, GO:0006334, GO:0007001

CD Domains:

Go To Gene Page:

35330
35544 (Tp_Myb2R4) SANT

35544 - (Tp_Myb2R4) SANT

GO Terms:

GO:0003677, GO:0005634

CD Domains:

Go To Gene Page:

35544
3790 (CTL1) Mito_carr

3790 - (CTL1) Mito_carr

GO Terms:

GO:0005488, GO:0006810, GO:0016020, GO:0005743

CD Domains:

Go To Gene Page:

3790
38060 DRMBL

38060 - DRMBL

GO Terms:

NA

CD Domains:

Go To Gene Page:

38060
39901 (PGK1) Phosphoglycerate_kinase

39901 - (PGK1) Phosphoglycerate_kinase

GO Terms:

GO:0004618, GO:0006096

CD Domains:

Go To Gene Page:

39901
40385 CFTR_protein

40385 - CFTR_protein

GO Terms:

GO:0005524, GO:0006810, GO:0016021, GO:0042626, GO:0016887, GO:0000166, GO:0017111

CD Domains:

Go To Gene Page:

40385
5144 fer2 superfamily

5144 - fer2 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

5144
5232 hypothetical protein

5232 - hypothetical protein

GO Terms:

GO:0006508, GO:0008237, GO:0008270

CD Domains:

Go To Gene Page:

5232
5926 hypothetical protein

5926 - hypothetical protein

GO Terms:

GO:0003677, GO:0006306, GO:0008170

CD Domains:

Go To Gene Page:

5926
6258 Nudix_Hydrolase superfamily

6258 - Nudix_Hydrolase superfamily

GO Terms:

GO:0004452, GO:0008299

CD Domains:

Go To Gene Page:

6258
6434 hypothetical protein

6434 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6434
7145 hypothetical protein

7145 - hypothetical protein

GO Terms:

GO:0005179, GO:0005576

CD Domains:

Go To Gene Page:

7145
8561 hypothetical protein

8561 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8561
870 hypothetical protein

870 - hypothetical protein

GO Terms:

GO:0005524, GO:0000285

CD Domains:

Go To Gene Page:

870
8776 Methyltransf_16 superfamily

8776 - Methyltransf_16 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

8776
8831 UAA

8831 - UAA

GO Terms:

NA

CD Domains:

Go To Gene Page:

8831
9189 hypothetical protein

9189 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9189
9207 hypothetical protein

9207 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9207
GO ID Go Term p-value q-value Cluster
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota) 0.000276478 0.754784 Thaps_bicluster_0039
GO:0006334 nucleosome assembly 0.000338111 0.921353 Thaps_bicluster_0039
GO:0016043 cell organization and biogenesis 0.0225447 1 Thaps_bicluster_0039
GO:0008299 isoprenoid biosynthesis 0.0489581 1 Thaps_bicluster_0039
GO:0006810 transport 0.0490128 1 Thaps_bicluster_0039
GO:0008152 metabolism 0.107961 1 Thaps_bicluster_0039
GO:0006306 DNA methylation 0.124172 1 Thaps_bicluster_0039
GO:0006096 glycolysis 0.155746 1 Thaps_bicluster_0039
GO:0007165 signal transduction 0.167304 1 Thaps_bicluster_0039
GO:0007242 intracellular signaling cascade 0.174925 1 Thaps_bicluster_0039
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