Thaps_bicluster_0043 Residual: 0.36
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0043 0.36 Thalassiosira pseudonana
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Displaying 1 - 32 of 32
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10106 hypothetical protein

10106 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10106
10109 hypothetical protein

10109 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10109
10750 MDR8

10750 - MDR8

GO Terms:

GO:0008270, GO:0016491

CD Domains:

Go To Gene Page:

10750
10986 hypothetical protein

10986 - hypothetical protein

GO Terms:

GO:0004295, GO:0006508

CD Domains:

Go To Gene Page:

10986
11231 hypothetical protein

11231 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11231
11377 hypothetical protein

11377 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11377
11641 GluZincin superfamily

11641 - GluZincin superfamily

GO Terms:

GO:0006508, GO:0008237, GO:0008270

CD Domains:

Go To Gene Page:

11641
1455 hypothetical protein

1455 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1455
1957 hypothetical protein

1957 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1957
21138 AAA_34 superfamily

21138 - AAA_34 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

21138
21370 ATS1

21370 - ATS1

GO Terms:

GO:0004197, GO:0006508, GO:0008766, GO:0016881, GO:0018169

CD Domains:

Go To Gene Page:

21370
23434 DOMON_DOH

23434 - DOMON_DOH

GO Terms:

NA

CD Domains:

Go To Gene Page:

23434
2613 hypothetical protein

2613 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2613
261541 RRM3_CELF1-6

261541 - RRM3_CELF1-6

GO Terms:

GO:0003676

CD Domains:

Go To Gene Page:

261541
264486 integrin domain-containing protein

264486 - integrin domain-containing protein

GO Terms:

GO:0007155, GO:0007160, GO:0008305

CD Domains:

Go To Gene Page:

264486
264853 (Tp_Myb3R1) SANT

264853 - (Tp_Myb3R1) SANT

GO Terms:

GO:0003677, GO:0005634

CD Domains:

Go To Gene Page:

264853
35404 PTZ00018

35404 - PTZ00018

GO Terms:

GO:0000786, GO:0003677, GO:0005634, GO:0006334, GO:0007001

CD Domains:

Go To Gene Page:

35404
4166 hypothetical protein

4166 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4166
4491 hypothetical protein

4491 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4491
4879 hypothetical protein

4879 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4879
5192 hypothetical protein

5192 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5192
5425 hypothetical protein

5425 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5425
6541 hypothetical protein

6541 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6541
6626 hypothetical protein

6626 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

6626
7122 (sig2) sig2-like protein

7122 - (sig2) sig2-like protein

GO Terms:

GO:0005198

CD Domains:

Go To Gene Page:

7122
7307 hypothetical protein

7307 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7307
7594 hypothetical protein

7594 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7594
8203 hypothetical protein

8203 - hypothetical protein

GO Terms:

GO:0005576

CD Domains:

Go To Gene Page:

8203
8215 (Tp_HSF_3.5h) HSF_DNA-bind superfamily

8215 - (Tp_HSF_3.5h) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677, GO:0001584, GO:0007186, GO:0016021

CD Domains:

Go To Gene Page:

8215
8263 hypothetical protein

8263 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8263
8511 hypothetical protein

8511 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8511
9555 hypothetical protein

9555 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9555
GO ID Go Term p-value q-value Cluster
GO:0030163 protein catabolic process 0.00454357 1 Thaps_bicluster_0043
GO:0006508 proteolysis 0.0314132 1 Thaps_bicluster_0043
GO:0007160 cell-matrix adhesion 0.0402221 1 Thaps_bicluster_0043
GO:0007186 G-protein coupled receptor protein signaling pathway 0.0467809 1 Thaps_bicluster_0043
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota) 0.0640724 1 Thaps_bicluster_0043
GO:0007155 cell adhesion 0.0662137 1 Thaps_bicluster_0043
GO:0006334 nucleosome assembly 0.0683505 1 Thaps_bicluster_0043
GO:0006355 regulation of transcription, DNA-dependent 0.514255 1 Thaps_bicluster_0043
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