Thaps_bicluster_0044 Residual: 0.46
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0044 0.46 Thalassiosira pseudonana
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Displaying 1 - 48 of 48
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10150 hypothetical protein

10150 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10150
10421 hypothetical protein

10421 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10421
11139 hypothetical protein

11139 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11139
11180 hypothetical protein

11180 - hypothetical protein

GO Terms:

GO:0004672, GO:0005524, GO:0006468

CD Domains:

Go To Gene Page:

11180
11977 hypothetical protein

11977 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11977
12085 hypothetical protein

12085 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12085
20605 hypothetical protein
20740 hypothetical protein

20740 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20740
20966 CIA30 superfamily

20966 - CIA30 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

20966
21061 hypothetical protein

21061 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21061
21403 hypothetical protein

21403 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21403
22030 Gph

22030 - Gph

GO Terms:

GO:0003824, GO:0008152

CD Domains:

Go To Gene Page:

22030
2215 SOUL

2215 - SOUL

GO Terms:

NA

CD Domains:

Go To Gene Page:

2215
22187 ACD_sHsps_p23-like

22187 - ACD_sHsps_p23-like

GO Terms:

NA

CD Domains:

Go To Gene Page:

22187
22657 hypothetical protein

22657 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22657
23071 hypothetical protein

23071 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23071
23668 hypothetical protein

23668 - hypothetical protein

GO Terms:

GO:0003824

CD Domains:

Go To Gene Page:

23668
23821 hypothetical protein

23821 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23821
24477 hypothetical protein

24477 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24477
24486 hypothetical protein

24486 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24486
24757 hypothetical protein

24757 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24757
25398 hypothetical protein

25398 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25398
25415 LRR_5

25415 - LRR_5

GO Terms:

NA

CD Domains:

Go To Gene Page:

25415
25466 hypothetical protein

25466 - hypothetical protein

GO Terms:

GO:0005515

CD Domains:

Go To Gene Page:

25466
25472 hypothetical protein

25472 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

25472
263287 COG4705

263287 - COG4705

GO Terms:

NA

CD Domains:

Go To Gene Page:

263287
2633 hypothetical protein

2633 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2633
2642 hypothetical protein

2642 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2642
264532 (CYN) PRK02866

264532 - (CYN) PRK02866

GO Terms:

GO:0003677, GO:0008824, GO:0009439, GO:0008152, GO:0016836

CD Domains:

Go To Gene Page:

264532
264730 AdoMet_MTases superfamily

264730 - AdoMet_MTases superfamily

GO Terms:

GO:0003824, GO:0004766

CD Domains:

Go To Gene Page:

264730
264753 RNR_PFL superfamily

264753 - RNR_PFL superfamily

GO Terms:

GO:0005506, GO:0006800, GO:0016491, GO:0003824

CD Domains:

Go To Gene Page:

264753
268217 hypothetical protein

268217 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

268217
269590 DUF706 superfamily

269590 - DUF706 superfamily

GO Terms:

GO:0050113

CD Domains:

Go To Gene Page:

269590
269952 hypothetical protein

269952 - hypothetical protein

GO Terms:

GO:0005554, GO:0016020

CD Domains:

Go To Gene Page:

269952
270291 hypothetical protein

270291 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

270291
3604 hypothetical protein

3604 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3604
4894 hypothetical protein

4894 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4894
6114 Guanylate_cyc_2 superfamily

6114 - Guanylate_cyc_2 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

6114
6542 hypothetical protein

6542 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6542
6616 hypothetical protein

6616 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6616
7186 hypothetical protein

7186 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7186
7338 hypothetical protein

7338 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7338
7822 hypothetical protein

7822 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7822
8121 hypothetical protein

8121 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8121
8584 hypothetical protein

8584 - hypothetical protein

GO Terms:

GO:0008757, GO:0007242, GO:0004568, GO:0008843

CD Domains:

Go To Gene Page:

8584
9311 hypothetical protein

9311 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9311
9656 hypothetical protein

9656 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9656
9763 hypothetical protein

9763 - hypothetical protein

GO Terms:

GO:0003677, GO:0003700, GO:0005634, GO:0006355, GO:0000151, GO:0004842, GO:0008270, GO:0016567

CD Domains:

Go To Gene Page:

9763
GO ID Go Term p-value q-value Cluster
GO:0009439 cyanate metabolism 0.00165392 1 Thaps_bicluster_0044
GO:0006800 oxygen and reactive oxygen species metabolism 0.00660132 1 Thaps_bicluster_0044
GO:0007242 intracellular signaling cascade 0.0674371 1 Thaps_bicluster_0044
GO:0016567 protein ubiquitination 0.123514 1 Thaps_bicluster_0044
GO:0008152 metabolism 0.141031 1 Thaps_bicluster_0044
GO:0006468 protein amino acid phosphorylation 0.302703 1 Thaps_bicluster_0044
GO:0006355 regulation of transcription, DNA-dependent 0.40843 1 Thaps_bicluster_0044
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