Thaps_bicluster_0050 Residual: 0.45
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0050 0.45 Thalassiosira pseudonana
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Displaying 1 - 43 of 43
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10016 hypothetical protein

10016 - hypothetical protein

GO Terms:

GO:0000074

CD Domains:

Go To Gene Page:

10016
10830 hypothetical protein

10830 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10830
11156 hypothetical protein

11156 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11156
11232 hypothetical protein

11232 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11232
11352 hypothetical protein

11352 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11352
11442 Reprolysin_3

11442 - Reprolysin_3

GO Terms:

NA

CD Domains:

Go To Gene Page:

11442
11846 hypothetical protein

11846 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11846
11855 hypothetical protein

11855 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11855
15007 Pumilio superfamily

15007 - Pumilio superfamily

GO Terms:

GO:0003723, GO:0016071

CD Domains:

Go To Gene Page:

15007
1643 LPLAT superfamily

1643 - LPLAT superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

1643
23308 hypothetical protein

23308 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23308
23391 (DES11) Delta6-FADS-like

23391 - (DES11) Delta6-FADS-like

GO Terms:

GO:0016491, GO:0006636, GO:0016020, GO:0016717, GO:0016213

CD Domains:

Go To Gene Page:

23391
24568 PPX1

24568 - PPX1

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

24568
24594 hypothetical protein

24594 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24594
24628 CoAse

24628 - CoAse

GO Terms:

NA

CD Domains:

Go To Gene Page:

24628
25648 hypothetical protein

25648 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25648
260819 WD40

260819 - WD40

GO Terms:

NA

CD Domains:

Go To Gene Page:

260819
261883 hypothetical protein

261883 - hypothetical protein

GO Terms:

GO:0003676

CD Domains:

Go To Gene Page:

261883
264269 COG3899

264269 - COG3899

GO Terms:

NA

CD Domains:

Go To Gene Page:

264269
2885 LPLAT_AGPAT-like

2885 - LPLAT_AGPAT-like

GO Terms:

GO:0008152, GO:0008415

CD Domains:

Go To Gene Page:

2885
33357 ParcG

33357 - ParcG

GO Terms:

NA

CD Domains:

Go To Gene Page:

33357
35230 NT_PAP_TUTase

35230 - NT_PAP_TUTase

GO Terms:

GO:0003676

CD Domains:

Go To Gene Page:

35230
36183 (GPA1) G-alpha

36183 - (GPA1) G-alpha

GO Terms:

GO:0004871, GO:0007186, GO:0005509

CD Domains:

Go To Gene Page:

36183
3784 hypothetical protein

3784 - hypothetical protein

GO Terms:

GO:0003677, GO:0008766, GO:0016881, GO:0018169

CD Domains:

Go To Gene Page:

3784
38186 Mo25 superfamily

38186 - Mo25 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

38186
38672 Rab

38672 - Rab

GO Terms:

GO:0005525, GO:0007264, GO:0006886, GO:0015031

CD Domains:

Go To Gene Page:

38672
4062 hypothetical protein

4062 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4062
5171 hypothetical protein

5171 - hypothetical protein

GO Terms:

GO:0004003, GO:0004004, GO:0008026, GO:0008094, GO:0008186, GO:0015462, GO:0015616, GO:0016887, GO:0017116, GO:0042623, GO:0042624, GO:0042625, GO:0042626

CD Domains:

Go To Gene Page:

5171
661 Cob-chelat-sub

661 - Cob-chelat-sub

GO Terms:

GO:0015979, GO:0015995, GO:0016851, GO:0000166, GO:0017111

CD Domains:

Go To Gene Page:

661
6832 hypothetical protein

6832 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6832
7626 hypothetical protein

7626 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7626
7825 hypothetical protein

7825 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7825
8649 hypothetical protein

8649 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8649
8781 hypothetical protein

8781 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8781
8787 hypothetical protein

8787 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8787
8909 hypothetical protein

8909 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8909
8998 Methyltransf_16 superfamily

8998 - Methyltransf_16 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

8998
9594 hypothetical protein

9594 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9594
9632 hypothetical protein

9632 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9632
9700 hypothetical protein

9700 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9700
9902 (Tp_bZIP25a) regulator [Rayko]

9902 - (Tp_bZIP25a) regulator [Rayko]

GO Terms:

GO:0003677, GO:0005634, GO:0006355

CD Domains:

Go To Gene Page:

9902
9945 TPR_12

9945 - TPR_12

GO Terms:

NA

CD Domains:

Go To Gene Page:

9945
GO ID Go Term p-value q-value Cluster
GO:0015995 chlorophyll biosynthesis 0.00906837 1 Thaps_bicluster_0050
GO:0016071 mRNA metabolism 0.0202987 1 Thaps_bicluster_0050
GO:0006636 fatty acid desaturation 0.0269812 1 Thaps_bicluster_0050
GO:0015979 photosynthesis 0.0291995 1 Thaps_bicluster_0050
GO:0007186 G-protein coupled receptor protein signaling pathway 0.0467809 1 Thaps_bicluster_0050
GO:0007264 small GTPase mediated signal transduction 0.0747343 1 Thaps_bicluster_0050
GO:0015031 protein transport 0.0936478 1 Thaps_bicluster_0050
GO:0006886 intracellular protein transport 0.116287 1 Thaps_bicluster_0050
GO:0000074 regulation of cell cycle 0.128417 1 Thaps_bicluster_0050
GO:0006355 regulation of transcription, DNA-dependent 0.514255 1 Thaps_bicluster_0050
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