Thaps_bicluster_0051 Residual: 0.39
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0051 0.39 Thalassiosira pseudonana
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Displaying 1 - 37 of 37
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10279 hypothetical protein

10279 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10279
10571 hypothetical protein

10571 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10571
11719 hypothetical protein

11719 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11719
12120 NADB_Rossmann superfamily

12120 - NADB_Rossmann superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

12120
1397 hypothetical protein

1397 - hypothetical protein

GO Terms:

GO:0004402

CD Domains:

Go To Gene Page:

1397
17484 Nudix_Hydrolase superfamily

17484 - Nudix_Hydrolase superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

17484
18771 MORN superfamily

18771 - MORN superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

18771
20810 hypothetical protein

20810 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20810
20987 hypothetical protein

20987 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20987
21789 hypothetical protein

21789 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21789
22673 NA

22673 - NA

GO Terms:

NA

CD Domains:

Go To Gene Page:

22673
23607 hypothetical protein

23607 - hypothetical protein

GO Terms:

GO:0016021

CD Domains:

Go To Gene Page:

23607
24603 (Tp_HSF_2.6b) HSF_DNA-bind superfamily

24603 - (Tp_HSF_2.6b) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003735, GO:0005622, GO:0005840, GO:0006412, GO:0003677

CD Domains:

Go To Gene Page:

24603
24758 hypothetical protein

24758 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24758
24864 hypothetical protein

24864 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24864
24970 hypothetical protein

24970 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24970
25953 (MDH2) PLN00105

25953 - (MDH2) PLN00105

GO Terms:

GO:0008152, GO:0016491, GO:0030060

CD Domains:

Go To Gene Page:

25953
260942 YjgF_YER057c_UK114_like_1

260942 - YjgF_YER057c_UK114_like_1

GO Terms:

NA

CD Domains:

Go To Gene Page:

260942
261112 Nudix_Hydrolase superfamily

261112 - Nudix_Hydrolase superfamily

GO Terms:

GO:0004452, GO:0008299

CD Domains:

Go To Gene Page:

261112
263365 PP2Cc superfamily

263365 - PP2Cc superfamily

GO Terms:

GO:0003824

CD Domains:

Go To Gene Page:

263365
264109 fabG

264109 - fabG

GO Terms:

GO:0008152, GO:0016491

CD Domains:

Go To Gene Page:

264109
268009 Ftr1_plasma membrane iron permease

268009 - Ftr1_plasma membrane iron permease

GO Terms:

NA

CD Domains:

Go To Gene Page:

268009
2705 COG2363

2705 - COG2363

GO Terms:

NA

CD Domains:

Go To Gene Page:

2705
3064 hypothetical protein

3064 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3064
3142 Mito_carr

3142 - Mito_carr

GO Terms:

GO:0005488, GO:0006810, GO:0016020

CD Domains:

Go To Gene Page:

3142
3153 hypothetical protein

3153 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3153
3302 hypothetical protein

3302 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3302
3384 hypothetical protein

3384 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3384
5502 hypothetical protein

5502 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5502
5548 hypothetical protein

5548 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5548
6595 hypothetical protein

6595 - hypothetical protein

GO Terms:

GO:0003677, GO:0006355

CD Domains:

Go To Gene Page:

6595
687 PTZ00318

687 - PTZ00318

GO Terms:

GO:0006118, GO:0015036, GO:0003954

CD Domains:

Go To Gene Page:

687
7678 hypothetical protein

7678 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7678
7956 Cupin_3

7956 - Cupin_3

GO Terms:

NA

CD Domains:

Go To Gene Page:

7956
874 hypothetical protein

874 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

874
9742 HA

9742 - HA

GO Terms:

NA

CD Domains:

Go To Gene Page:

9742
9987 hypothetical protein

9987 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9987
GO ID Go Term p-value q-value Cluster
GO:0008299 isoprenoid biosynthesis 0.0180619 1 Thaps_bicluster_0051
GO:0006355 regulation of transcription, DNA-dependent 0.0872056 1 Thaps_bicluster_0051
GO:0008152 metabolism 0.141031 1 Thaps_bicluster_0051
GO:0006412 protein biosynthesis 0.243897 1 Thaps_bicluster_0051
GO:0006810 transport 0.266912 1 Thaps_bicluster_0051
GO:0006118 electron transport 0.364179 1 Thaps_bicluster_0051
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