Thaps_bicluster_0054 Residual: 0.44
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0054 0.44 Thalassiosira pseudonana
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Displaying 1 - 36 of 36
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11182 PLN02545

11182 - PLN02545

GO Terms:

GO:0006631, GO:0016491, GO:0003857

CD Domains:

Go To Gene Page:

11182
1215 E1_enzyme_family superfamily

1215 - E1_enzyme_family superfamily

GO Terms:

GO:0003824, GO:0004842

CD Domains:

Go To Gene Page:

1215
21145 hypothetical protein

21145 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21145
22074 hypothetical protein

22074 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22074
22424 FKBP_C

22424 - FKBP_C

GO Terms:

GO:0006457

CD Domains:

Go To Gene Page:

22424
2311 hypothetical protein

2311 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2311
24591 hypothetical protein

24591 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24591
24725 SEC14

24725 - SEC14

GO Terms:

NA

CD Domains:

Go To Gene Page:

24725
25944 p450 superfamily

25944 - p450 superfamily

GO Terms:

GO:0006118, GO:0004497, GO:0050381

CD Domains:

Go To Gene Page:

25944
268931 hypothetical protein

268931 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

268931
269927 DUF2453

269927 - DUF2453

GO Terms:

NA

CD Domains:

Go To Gene Page:

269927
2965 hypothetical protein

2965 - hypothetical protein

GO Terms:

GO:0003824, GO:0008152, GO:0016855

CD Domains:

Go To Gene Page:

2965
30075 (PSA5) proteasome_alpha_type_5

30075 - (PSA5) proteasome_alpha_type_5

GO Terms:

GO:0004175, GO:0005839, GO:0006511, GO:0004298, GO:0004299

CD Domains:

Go To Gene Page:

30075
33310 STE14

33310 - STE14

GO Terms:

GO:0004671, GO:0006481, GO:0016021

CD Domains:

Go To Gene Page:

33310
33343 (PGD1) PLN02350

33343 - (PGD1) PLN02350

GO Terms:

GO:0004616, GO:0006098

CD Domains:

Go To Gene Page:

33343
33777 S_TKc

33777 - S_TKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0005351, GO:0009401, GO:0004674

CD Domains:

Go To Gene Page:

33777
3481 hypothetical protein

3481 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3481
35523 ICL_PEPM

35523 - ICL_PEPM

GO Terms:

GO:0003824, GO:0008152, GO:0005198, GO:0005874, GO:0007018, GO:0004451, GO:0006097

CD Domains:

Go To Gene Page:

35523
35771 PCI

35771 - PCI

GO Terms:

NA

CD Domains:

Go To Gene Page:

35771
36139 DUF3593

36139 - DUF3593

GO Terms:

NA

CD Domains:

Go To Gene Page:

36139
36656 DUF4336

36656 - DUF4336

GO Terms:

NA

CD Domains:

Go To Gene Page:

36656
37409 vWFA superfamily

37409 - vWFA superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

37409
3768 hypothetical protein

3768 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3768
38054 hypothetical protein

38054 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

38054
38157 (FCT1) GDP-L-fucose transporter

38157 - (FCT1) GDP-L-fucose transporter

GO Terms:

NA

CD Domains:

Go To Gene Page:

38157
38574 DnaJ-X superfamily

38574 - DnaJ-X superfamily

GO Terms:

GO:0006457, GO:0031072, GO:0051082

CD Domains:

Go To Gene Page:

38574
39913 (COP6) Coatomer_E

39913 - (COP6) Coatomer_E

GO Terms:

GO:0003735, GO:0005622, GO:0005840, GO:0006412, GO:0005737, GO:0006886, GO:0008565, GO:0016020

CD Domains:

Go To Gene Page:

39913
4027 hypothetical protein

4027 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4027
40817 hypothetical protein

40817 - hypothetical protein

GO Terms:

GO:0000151, GO:0004842, GO:0008270, GO:0016567

CD Domains:

Go To Gene Page:

40817
4186 hypothetical protein

4186 - hypothetical protein

GO Terms:

GO:0031177

CD Domains:

Go To Gene Page:

4186
4696 hypothetical protein

4696 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4696
4957 hypothetical protein

4957 - hypothetical protein

GO Terms:

GO:0016491, GO:0004308

CD Domains:

Go To Gene Page:

4957
5026 F1-ATPase_gamma

5026 - F1-ATPase_gamma

GO Terms:

GO:0015986, GO:0016020, GO:0016469, GO:0046933, GO:0046961, GO:0003936

CD Domains:

Go To Gene Page:

5026
6718 hypothetical protein

6718 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6718
7887 Snf7 superfamily

7887 - Snf7 superfamily

GO Terms:

GO:0005554

CD Domains:

Go To Gene Page:

7887
GO ID Go Term p-value q-value Cluster
GO:0006481 C-terminal protein amino acid methylation 0.00351458 1 Thaps_bicluster_0054
GO:0006097 glyoxylate cycle 0.00701752 1 Thaps_bicluster_0054
GO:0006631 fatty acid metabolism 0.0105089 1 Thaps_bicluster_0054
GO:0006098 pentose-phosphate shunt 0.0209137 1 Thaps_bicluster_0054
GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system 0.0615124 1 Thaps_bicluster_0054
GO:0006457 protein folding 0.0749473 1 Thaps_bicluster_0054
GO:0007018 microtubule-based movement 0.141059 1 Thaps_bicluster_0054
GO:0015986 ATP synthesis coupled proton transport 0.150166 1 Thaps_bicluster_0054
GO:0006511 ubiquitin-dependent protein catabolism 0.165143 1 Thaps_bicluster_0054
GO:0006886 intracellular protein transport 0.17401 1 Thaps_bicluster_0054
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