Thaps_bicluster_0056 Residual: 0.44
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0056 0.44 Thalassiosira pseudonana
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Displaying 1 - 45 of 45
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10311 hypothetical protein

10311 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10311
10313 hypothetical protein

10313 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10313
10791 ATS1

10791 - ATS1

GO Terms:

GO:0008766, GO:0016881, GO:0018169

CD Domains:

Go To Gene Page:

10791
10819 hypothetical protein

10819 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10819
11191 hypothetical protein

11191 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11191
11194 hypothetical protein

11194 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11194
11209 hypothetical protein

11209 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11209
12118 hypothetical protein

12118 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12118
15887 STKc_CDK7

15887 - STKc_CDK7

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

15887
1941 hypothetical protein

1941 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1941
20649 hypothetical protein

20649 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20649
20946 ANK

20946 - ANK

GO Terms:

NA

CD Domains:

Go To Gene Page:

20946
20999 hypothetical protein

20999 - hypothetical protein

GO Terms:

GO:0000074

CD Domains:

Go To Gene Page:

20999
21452 hypothetical protein

21452 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21452
21668 hypothetical protein

21668 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21668
21807 hypothetical protein

21807 - hypothetical protein

GO Terms:

GO:0005515

CD Domains:

Go To Gene Page:

21807
22064 hypothetical protein

22064 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22064
22941 plant_peroxidase_like

22941 - plant_peroxidase_like

GO Terms:

GO:0004601, GO:0006979

CD Domains:

Go To Gene Page:

22941
23545 DnaJ

23545 - DnaJ

GO Terms:

GO:0006457, GO:0031072, GO:0051082, GO:0003735, GO:0005622, GO:0005840, GO:0006412

CD Domains:

Go To Gene Page:

23545
24134 hypothetical protein

24134 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24134
24257 hypothetical protein

24257 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24257
24325 hypothetical protein

24325 - hypothetical protein

GO Terms:

GO:0005509, GO:0007155, GO:0003899, GO:0003900, GO:0003901, GO:0003902

CD Domains:

Go To Gene Page:

24325
24557 hypothetical protein

24557 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24557
24566 hypothetical protein

24566 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24566
25058 hypothetical protein

25058 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25058
25060 hypothetical protein

25060 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25060
25061 hypothetical protein

25061 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25061
25098 hypothetical protein

25098 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25098
25337 hypothetical protein

25337 - hypothetical protein

GO Terms:

GO:0003677, GO:0006306, GO:0008170, GO:0008766, GO:0016881, GO:0018169

CD Domains:

Go To Gene Page:

25337
25375 hypothetical protein

25375 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25375
25659 hypothetical protein

25659 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25659
264494 SIR2 superfamily

264494 - SIR2 superfamily

GO Terms:

GO:0003677, GO:0005677, GO:0006342, GO:0006355, GO:0004407, GO:0008418, GO:0008759, GO:0009017, GO:0016811, GO:0017159, GO:0018748, GO:0018749, GO:0047419

CD Domains:

Go To Gene Page:

264494
269475 SIR2 superfamily

269475 - SIR2 superfamily

GO Terms:

GO:0003677, GO:0005677, GO:0006342, GO:0006355, GO:0003956

CD Domains:

Go To Gene Page:

269475
28920 S_TKc

28920 - S_TKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

28920
29651 S_TKc

29651 - S_TKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

29651
30457 SrmB

30457 - SrmB

GO Terms:

NA

CD Domains:

Go To Gene Page:

30457
3517 hypothetical protein

3517 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3517
4082 hypothetical protein

4082 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4082
4936 hypothetical protein

4936 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4936
5161 hypothetical protein

5161 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5161
7709 ANK

7709 - ANK

GO Terms:

NA

CD Domains:

Go To Gene Page:

7709
7818 hypothetical protein

7818 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7818
8355 hypothetical protein

8355 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8355
9242 hypothetical protein

9242 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9242
9964 hypothetical protein

9964 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9964
GO ID Go Term p-value q-value Cluster
GO:0006342 chromatin silencing 0.000237548 0.649455 Thaps_bicluster_0056
GO:0006468 protein amino acid phosphorylation 0.017356 1 Thaps_bicluster_0056
GO:0006979 response to oxidative stress 0.0626925 1 Thaps_bicluster_0056
GO:0006306 DNA methylation 0.075288 1 Thaps_bicluster_0056
GO:0007155 cell adhesion 0.0777882 1 Thaps_bicluster_0056
GO:0000074 regulation of cell cycle 0.149957 1 Thaps_bicluster_0056
GO:0006355 regulation of transcription, DNA-dependent 0.197871 1 Thaps_bicluster_0056
GO:0006457 protein folding 0.298558 1 Thaps_bicluster_0056
GO:0006412 protein biosynthesis 0.365269 1 Thaps_bicluster_0056
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