Thaps_bicluster_0058 Residual: 0.44
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0058 0.44 Thalassiosira pseudonana
" class="views-fluidgrid-wrapper clear-block">
Displaying 1 - 49 of 49
" class="views-fluidgrid-wrapper clear-block">
10947 hypothetical protein

10947 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10947
10978 hypothetical protein

10978 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10978
11275 hypothetical protein

11275 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11275
12024 hypothetical protein

12024 - hypothetical protein

GO Terms:

GO:0005509

CD Domains:

Go To Gene Page:

12024
12161 hypothetical protein

12161 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12161
12179 hypothetical protein

12179 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12179
14322 S_TKc

14322 - S_TKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

14322
1945 hypothetical protein

1945 - hypothetical protein

GO Terms:

GO:0000151, GO:0004842, GO:0008270, GO:0016567

CD Domains:

Go To Gene Page:

1945
20461 DnaJ

20461 - DnaJ

GO Terms:

GO:0006457, GO:0031072, GO:0051082

CD Domains:

Go To Gene Page:

20461
21001 hypothetical protein

21001 - hypothetical protein

GO Terms:

GO:0000074

CD Domains:

Go To Gene Page:

21001
21279 hypothetical protein

21279 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21279
2141 SGNH_hydrolase superfamily

2141 - SGNH_hydrolase superfamily

GO Terms:

GO:0003824

CD Domains:

Go To Gene Page:

2141
21707 hypothetical protein

21707 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21707
21968 hypothetical protein

21968 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21968
22135 (Tp_HSF_3.5d) HSF_DNA-bind superfamily

22135 - (Tp_HSF_3.5d) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

22135
2218 (Tp_HSF_2.4a) HSF_DNA-bind superfamily

2218 - (Tp_HSF_2.4a) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

2218
22332 GAT1_Peptidase_E

22332 - GAT1_Peptidase_E

GO Terms:

GO:0006508, GO:0008236

CD Domains:

Go To Gene Page:

22332
22490 Cyt_b561_FRRS1_like

22490 - Cyt_b561_FRRS1_like

GO Terms:

GO:0004500, GO:0006584

CD Domains:

Go To Gene Page:

22490
22953 hypothetical protein

22953 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22953
23072 hypothetical protein

23072 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23072
23084 hypothetical protein

23084 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23084
23927 hypothetical protein

23927 - hypothetical protein

GO Terms:

GO:0003684, GO:0005524, GO:0006298

CD Domains:

Go To Gene Page:

23927
23982 hypothetical protein

23982 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23982
24150 hypothetical protein

24150 - hypothetical protein

GO Terms:

GO:0000151, GO:0004842, GO:0008270, GO:0016567

CD Domains:

Go To Gene Page:

24150
24339 hypothetical protein

24339 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24339
24684 hypothetical protein

24684 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24684
24761 hypothetical protein

24761 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24761
24918 hypothetical protein

24918 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24918
25246 RRM_SF superfamily

25246 - RRM_SF superfamily

GO Terms:

GO:0003676, GO:0004402

CD Domains:

Go To Gene Page:

25246
25372 hypothetical protein

25372 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25372
25382 hypothetical protein

25382 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25382
25414 hypothetical protein

25414 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25414
25432 hypothetical protein

25432 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25432
25623 hypothetical protein

25623 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25623
25779 hypothetical protein

25779 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25779
25890 (Tp_HSF_2.7a) regulator [Rayko]

25890 - (Tp_HSF_2.7a) regulator [Rayko]

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

25890
268316 Annexin

268316 - Annexin

GO Terms:

GO:0005509, GO:0005544, GO:0050819, GO:0047394

CD Domains:

Go To Gene Page:

268316
269386 Tryp_SPc

269386 - Tryp_SPc

GO Terms:

GO:0004295, GO:0006508, GO:0004263, GO:0004252, GO:0004289, GO:0008132, GO:0008243, GO:0008991, GO:0016808

CD Domains:

Go To Gene Page:

269386
3201 hypothetical protein

3201 - hypothetical protein

GO Terms:

GO:0008152, GO:0016740

CD Domains:

Go To Gene Page:

3201
32858 DnaJ

32858 - DnaJ

GO Terms:

GO:0006457, GO:0031072, GO:0051082

CD Domains:

Go To Gene Page:

32858
36735 hypothetical protein

36735 - hypothetical protein

GO Terms:

GO:0008757

CD Domains:

Go To Gene Page:

36735
3863 DadA

3863 - DadA

GO Terms:

NA

CD Domains:

Go To Gene Page:

3863
4747 hypothetical protein

4747 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4747
5835 hypothetical protein

5835 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5835
6635 hypothetical protein

6635 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6635
6808 hypothetical protein

6808 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6808
7865 hypothetical protein

7865 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7865
8033 hypothetical protein

8033 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8033
8810 hypothetical protein

8810 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8810
GO ID Go Term p-value q-value Cluster
GO:0050819 negative regulation of coagulation 0.00619321 1 Thaps_bicluster_0058
GO:0006584 catecholamine metabolism 0.0123506 1 Thaps_bicluster_0058
GO:0016567 protein ubiquitination 0.0241003 1 Thaps_bicluster_0058
GO:0006298 mismatch repair 0.0485536 1 Thaps_bicluster_0058
GO:0006457 protein folding 0.0598991 1 Thaps_bicluster_0058
GO:0006355 regulation of transcription, DNA-dependent 0.0652451 1 Thaps_bicluster_0058
GO:0000074 regulation of cell cycle 0.170973 1 Thaps_bicluster_0058
GO:0006508 proteolysis and peptidolysis 0.223555 1 Thaps_bicluster_0058
GO:0006468 protein amino acid phosphorylation 0.491617 1 Thaps_bicluster_0058
GO:0008152 metabolism 0.732978 1 Thaps_bicluster_0058
Log in to post comments