Thaps_bicluster_0060 Residual: 0.47
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0060 0.47 Thalassiosira pseudonana
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Displaying 1 - 47 of 47
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10422 hypothetical protein

10422 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10422
10488 Methyltransf_22

10488 - Methyltransf_22

GO Terms:

NA

CD Domains:

Go To Gene Page:

10488
10936 hypothetical protein

10936 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10936
12127 hypothetical protein

12127 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12127
2009 hypothetical protein

2009 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2009
20590 hypothetical protein

20590 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

20590
20611 hypothetical protein

20611 - hypothetical protein

GO Terms:

GO:0004402

CD Domains:

Go To Gene Page:

20611
20718 Methyltransf_16 superfamily

20718 - Methyltransf_16 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

20718
20786 SCP_euk

20786 - SCP_euk

GO Terms:

GO:0005576

CD Domains:

Go To Gene Page:

20786
21299 AFD_class_I superfamily

21299 - AFD_class_I superfamily

GO Terms:

GO:0003824, GO:0008152, GO:0016874, GO:0051340

CD Domains:

Go To Gene Page:

21299
21446 hypothetical protein

21446 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21446
21584 hypothetical protein

21584 - hypothetical protein

GO Terms:

GO:0008757, GO:0004812, GO:0005524, GO:0006418, GO:0004308

CD Domains:

Go To Gene Page:

21584
21590 hypothetical protein

21590 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21590
21756 hypothetical protein

21756 - hypothetical protein

GO Terms:

GO:0006464, GO:0004402

CD Domains:

Go To Gene Page:

21756
21844 hypothetical protein

21844 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21844
21954 ATP-grasp_4

21954 - ATP-grasp_4

GO Terms:

NA

CD Domains:

Go To Gene Page:

21954
21976 hypothetical protein

21976 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21976
22777 hypothetical protein

22777 - hypothetical protein

GO Terms:

GO:0003899, GO:0003900, GO:0003901, GO:0003902

CD Domains:

Go To Gene Page:

22777
22844 Choline_transpo

22844 - Choline_transpo

GO Terms:

NA

CD Domains:

Go To Gene Page:

22844
23509 hypothetical protein

23509 - hypothetical protein

GO Terms:

GO:0006508, GO:0008237, GO:0008270

CD Domains:

Go To Gene Page:

23509
23832 hypothetical protein

23832 - hypothetical protein

GO Terms:

GO:0003677, GO:0003700, GO:0005634, GO:0006355

CD Domains:

Go To Gene Page:

23832
24617 hypothetical protein

24617 - hypothetical protein

GO Terms:

GO:0005515

CD Domains:

Go To Gene Page:

24617
24626 RING

24626 - RING

GO Terms:

GO:0000151, GO:0004842, GO:0008270, GO:0016567

CD Domains:

Go To Gene Page:

24626
24937 hypothetical protein

24937 - hypothetical protein

GO Terms:

GO:0004016, GO:0008294

CD Domains:

Go To Gene Page:

24937
25350 Methyltransf_24

25350 - Methyltransf_24

GO Terms:

NA

CD Domains:

Go To Gene Page:

25350
2543 hypothetical protein

2543 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2543
25573 hypothetical protein

25573 - hypothetical protein

GO Terms:

GO:0005489, GO:0006118, GO:0004339

CD Domains:

Go To Gene Page:

25573
25738 ANK

25738 - ANK

GO Terms:

NA

CD Domains:

Go To Gene Page:

25738
25897 hypothetical protein

25897 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

25897
261820 PKc_like superfamily

261820 - PKc_like superfamily

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

261820
262720 sensory_box

262720 - sensory_box

GO Terms:

GO:0004871, GO:0007165

CD Domains:

Go To Gene Page:

262720
264732

264732 -

GO Terms:

GO:0008757

CD Domains:

Go To Gene Page:

264732
264882

264882 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

264882
268890 Peptidases_S8_Kp43_protease

268890 - Peptidases_S8_Kp43_protease

GO Terms:

GO:0004289, GO:0006508

CD Domains:

Go To Gene Page:

268890
269557 NADB_Rossmann superfamily

269557 - NADB_Rossmann superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

269557
269866 Gst

269866 - Gst

GO Terms:

GO:0004364

CD Domains:

Go To Gene Page:

269866
30887 Cyt-b5

30887 - Cyt-b5

GO Terms:

NA

CD Domains:

Go To Gene Page:

30887
31085 Aa_trans superfamily

31085 - Aa_trans superfamily

GO Terms:

GO:0005279, GO:0006865, GO:0016020

CD Domains:

Go To Gene Page:

31085
33242 TB2_DP1_HVA22

33242 - TB2_DP1_HVA22

GO Terms:

NA

CD Domains:

Go To Gene Page:

33242
34191 CobN_like

34191 - CobN_like

GO Terms:

GO:0009058

CD Domains:

Go To Gene Page:

34191
38490 LPLAT_MGAT-like

38490 - LPLAT_MGAT-like

GO Terms:

NA

CD Domains:

Go To Gene Page:

38490
4525 hypothetical protein

4525 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4525
6680 hypothetical protein

6680 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6680
6974 hypothetical protein

6974 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6974
8395 hypothetical protein

8395 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8395
GO ID Go Term p-value q-value Cluster
GO:0006865 amino acid transport 0.075288 1 Thaps_bicluster_0060
GO:0009058 biosynthesis 0.138303 1 Thaps_bicluster_0060
GO:0006118 electron transport 0.521096 1 Thaps_bicluster_0060
GO:0008152 metabolism 0.681496 1 Thaps_bicluster_0060
GO:0006468 protein amino acid phosphorylation 0.443559 1 Thaps_bicluster_0060
GO:0006464 protein modification 0.147638 1 Thaps_bicluster_0060
GO:0016567 protein ubiquitination 0.192928 1 Thaps_bicluster_0060
GO:0006508 proteolysis and peptidolysis 0.179105 1 Thaps_bicluster_0060
GO:0051340 regulation of ligase activity 0.00268762 1 Thaps_bicluster_0060
GO:0006355 regulation of transcription, DNA-dependent 0.574096 1 Thaps_bicluster_0060
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