Thaps_bicluster_0062 Residual: 0.41
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0062 0.41 Thalassiosira pseudonana
" class="views-fluidgrid-wrapper clear-block">
Displaying 1 - 42 of 42
" class="views-fluidgrid-wrapper clear-block">
10229 hypothetical protein

10229 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10229
10446 hypothetical protein

10446 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10446
11282 hypothetical protein

11282 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11282
11383 hypothetical protein

11383 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11383
11390 hypothetical protein

11390 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11390
11709 SGNH_hydrolase superfamily

11709 - SGNH_hydrolase superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

11709
11793 DUF389

11793 - DUF389

GO Terms:

NA

CD Domains:

Go To Gene Page:

11793
12066 (Tp_HSF_3.7a) HSF_DNA-bind

12066 - (Tp_HSF_3.7a) HSF_DNA-bind

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

12066
12132 hypothetical protein

12132 - hypothetical protein

GO Terms:

GO:0003684, GO:0005524, GO:0006298

CD Domains:

Go To Gene Page:

12132
14899 DegQ

14899 - DegQ

GO Terms:

GO:0004295, GO:0006508, GO:0005515, GO:0004252, GO:0004289, GO:0008132, GO:0008243, GO:0008991, GO:0016808

CD Domains:

Go To Gene Page:

14899
21161 Patched

21161 - Patched

GO Terms:

GO:0008158, GO:0016020

CD Domains:

Go To Gene Page:

21161
21897 hypothetical protein

21897 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21897
24373 hypothetical protein

24373 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24373
25001 hypothetical protein

25001 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25001
25278 AD superfamily

25278 - AD superfamily

GO Terms:

GO:0005198, GO:0005874, GO:0007018

CD Domains:

Go To Gene Page:

25278
25842 hypothetical protein

25842 - hypothetical protein

GO Terms:

GO:0005576, GO:0006030, GO:0008061

CD Domains:

Go To Gene Page:

25842
261184 ACD_sHsps-like

261184 - ACD_sHsps-like

GO Terms:

NA

CD Domains:

Go To Gene Page:

261184
261312 MFS

261312 - MFS

GO Terms:

GO:0005215, GO:0006810, GO:0016021

CD Domains:

Go To Gene Page:

261312
262941 (Tp_HSF_1.4c) HSF_DNA-bind

262941 - (Tp_HSF_1.4c) HSF_DNA-bind

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

262941
263834 RNR_PFL superfamily

263834 - RNR_PFL superfamily

GO Terms:

GO:0005506, GO:0006800, GO:0016491, GO:0003824

CD Domains:

Go To Gene Page:

263834
264289 IbpA

264289 - IbpA

GO Terms:

NA

CD Domains:

Go To Gene Page:

264289
264396 (Tp_CXC6) TCR

264396 - (Tp_CXC6) TCR

GO Terms:

NA

CD Domains:

Go To Gene Page:

264396
264757 RNR_PFL superfamily

264757 - RNR_PFL superfamily

GO Terms:

GO:0005506, GO:0006800, GO:0016491, GO:0003824

CD Domains:

Go To Gene Page:

264757
269575 hypothetical protein

269575 - hypothetical protein

GO Terms:

GO:0000151, GO:0004842, GO:0008270, GO:0016567

CD Domains:

Go To Gene Page:

269575
4075 hypothetical protein

4075 - hypothetical protein

GO Terms:

GO:0003677, GO:0006355

CD Domains:

Go To Gene Page:

4075
4076 hypothetical protein

4076 - hypothetical protein

GO Terms:

GO:0003677, GO:0006355

CD Domains:

Go To Gene Page:

4076
40894 PTZ00037

40894 - PTZ00037

GO Terms:

GO:0006457, GO:0031072, GO:0051082

CD Domains:

Go To Gene Page:

40894
4844 hypothetical protein

4844 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4844
5891 hypothetical protein

5891 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5891
6097 hypothetical protein

6097 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6097
6678 hypothetical protein

6678 - hypothetical protein

GO Terms:

GO:0003899, GO:0003900, GO:0003901, GO:0003902

CD Domains:

Go To Gene Page:

6678
7006 hypothetical protein

7006 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7006
7290 hypothetical protein

7290 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7290
7353 hypothetical protein

7353 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7353
7885 HP_PGM_like

7885 - HP_PGM_like

GO Terms:

GO:0003824, GO:0008152

CD Domains:

Go To Gene Page:

7885
7919 hypothetical protein

7919 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7919
8036 hypothetical protein

8036 - hypothetical protein

GO Terms:

GO:0016706, GO:0019538

CD Domains:

Go To Gene Page:

8036
8222 hypothetical protein

8222 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8222
899 hypothetical protein

899 - hypothetical protein

GO Terms:

GO:0006508, GO:0008237, GO:0008270

CD Domains:

Go To Gene Page:

899
9674 hypothetical protein

9674 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9674
ThpsCp086 (ycf35) Ycf35

ThpsCp086 - (ycf35) Ycf35

GO Terms:

NA

CD Domains:

Go To Gene Page:

ThpsCp086
ThpsCp130 (ycf35) Ycf35

ThpsCp130 - (ycf35) Ycf35

GO Terms:

NA

CD Domains:

Go To Gene Page:

ThpsCp130
GO ID Go Term p-value q-value Cluster
GO:0006800 oxygen and reactive oxygen species metabolism 0.0000613 0.168638 Thaps_bicluster_0062
GO:0006355 regulation of transcription, DNA-dependent 0.0157535 1 Thaps_bicluster_0062
GO:0006298 mismatch repair 0.0517107 1 Thaps_bicluster_0062
GO:0006030 chitin metabolism 0.067349 1 Thaps_bicluster_0062
GO:0007018 microtubule-based movement 0.133329 1 Thaps_bicluster_0062
GO:0019538 protein metabolism 0.14198 1 Thaps_bicluster_0062
GO:0016567 protein ubiquitination 0.231941 1 Thaps_bicluster_0062
GO:0006508 proteolysis and peptidolysis 0.2461 1 Thaps_bicluster_0062
GO:0006457 protein folding 0.353763 1 Thaps_bicluster_0062
GO:0006810 transport 0.462864 1 Thaps_bicluster_0062
Log in to post comments