Thaps_bicluster_0064 Residual: 0.41
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0064 0.41 Thalassiosira pseudonana
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Displaying 1 - 35 of 35
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10395 hypothetical protein

10395 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10395
1044 hypothetical protein

1044 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1044
10450 hypothetical protein

10450 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10450
10893 hypothetical protein

10893 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10893
15916 PKc_like superfamily

15916 - PKc_like superfamily

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

15916
2032 hypothetical protein

2032 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2032
21487 (Tpt6) hypothetical protein

21487 - (Tpt6) hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21487
22544 Delta6-FADS-like

22544 - Delta6-FADS-like

GO Terms:

GO:0016491, GO:0006636, GO:0016020, GO:0016717, GO:0016213

CD Domains:

Go To Gene Page:

22544
23044 hypothetical protein

23044 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23044
24066 hypothetical protein

24066 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24066
24090 hypothetical protein

24090 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

24090
25153 WD40 superfamily

25153 - WD40 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

25153
2519 hypothetical protein

2519 - hypothetical protein

GO Terms:

GO:0006457, GO:0031072, GO:0051082

CD Domains:

Go To Gene Page:

2519
261203 PRK05550

261203 - PRK05550

GO Terms:

GO:0006464, GO:0008113

CD Domains:

Go To Gene Page:

261203
261393 Arginase_HDAC superfamily

261393 - Arginase_HDAC superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

261393
263001 (MYB19)

263001 - (MYB19)

GO Terms:

NA

CD Domains:

Go To Gene Page:

263001
263036 HP_PGM_like

263036 - HP_PGM_like

GO Terms:

GO:0003824, GO:0008152, GO:0004619, GO:0046537, GO:0046538

CD Domains:

Go To Gene Page:

263036
264421 3a01204

264421 - 3a01204

GO Terms:

GO:0005524, GO:0016887, GO:0000166, GO:0017111

CD Domains:

Go To Gene Page:

264421
264481 Gly_transf_sug

264481 - Gly_transf_sug

GO Terms:

NA

CD Domains:

Go To Gene Page:

264481
269017 (FRD1) flavo_cyto_c

269017 - (FRD1) flavo_cyto_c

GO Terms:

GO:0006118, GO:0016491, GO:0000104

CD Domains:

Go To Gene Page:

269017
2734 hypothetical protein

2734 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2734
33929 PDI_a_family

33929 - PDI_a_family

GO Terms:

GO:0005489, GO:0006118

CD Domains:

Go To Gene Page:

33929
34629 Rad10 superfamily

34629 - Rad10 superfamily

GO Terms:

GO:0003677, GO:0003684, GO:0004519, GO:0005634, GO:0006281

CD Domains:

Go To Gene Page:

34629
38616 FRQ1

38616 - FRQ1

GO Terms:

GO:0005509

CD Domains:

Go To Gene Page:

38616
4034 hypothetical protein

4034 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4034
4243 UCH

4243 - UCH

GO Terms:

GO:0004197, GO:0004221, GO:0006511

CD Domains:

Go To Gene Page:

4243
4302 DUF788 superfamily

4302 - DUF788 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

4302
5304 hypothetical protein

5304 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5304
5812 hypothetical protein

5812 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5812
7016 hypothetical protein

7016 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7016
7059 COG0790

7059 - COG0790

GO Terms:

NA

CD Domains:

Go To Gene Page:

7059
8380 hypothetical protein

8380 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8380
8726 IPK

8726 - IPK

GO Terms:

GO:0008440, GO:0050516

CD Domains:

Go To Gene Page:

8726
9336 hypothetical protein

9336 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9336
9360 hypothetical protein

9360 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9360
GO ID Go Term p-value q-value Cluster
GO:0006636 fatty acid desaturation 0.0221257 1 Thaps_bicluster_0064
GO:0006281 DNA repair 0.0824713 1 Thaps_bicluster_0064
GO:0006118 electron transport 0.0839917 1 Thaps_bicluster_0064
GO:0006511 ubiquitin-dependent protein catabolism 0.0910605 1 Thaps_bicluster_0064
GO:0006464 protein modification 0.104655 1 Thaps_bicluster_0064
GO:0006457 protein folding 0.217609 1 Thaps_bicluster_0064
GO:0006468 protein amino acid phosphorylation 0.333459 1 Thaps_bicluster_0064
GO:0008152 metabolism 0.546944 1 Thaps_bicluster_0064
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