Thaps_bicluster_0072 Residual: 0.37
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0072 0.37 Thalassiosira pseudonana
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Displaying 1 - 46 of 46
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10010 hypothetical protein

10010 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10010
10023 hypothetical protein

10023 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10023
10509 hypothetical protein

10509 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10509
10713 hypothetical protein

10713 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10713
10754 hypothetical protein

10754 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10754
11052 hypothetical protein

11052 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11052
11403 hypothetical protein

11403 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11403
11407 hypothetical protein

11407 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11407
11408 hypothetical protein

11408 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11408
11536 DDE_Tnp_1_7 superfamily

11536 - DDE_Tnp_1_7 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

11536
11541 hypothetical protein

11541 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11541
11649 hypothetical protein

11649 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11649
11681 hypothetical protein

11681 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11681
12124 hypothetical protein

12124 - hypothetical protein

GO Terms:

GO:0003899, GO:0003900, GO:0003901, GO:0003902

CD Domains:

Go To Gene Page:

12124
12125 hypothetical protein

12125 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12125
1324 DDE_Tnp_1_7 superfamily

1324 - DDE_Tnp_1_7 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

1324
1353 hypothetical protein

1353 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1353
2365 hypothetical protein

2365 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2365
24978 hypothetical protein

24978 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24978
25550 hypothetical protein

25550 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25550
261704

261704 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

261704
262191 RNase_HI_RT_Ty1

262191 - RNase_HI_RT_Ty1

GO Terms:

NA

CD Domains:

Go To Gene Page:

262191
262676

262676 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

262676
263849 FG-GAP_2

263849 - FG-GAP_2

GO Terms:

GO:0007155, GO:0007160, GO:0008305

CD Domains:

Go To Gene Page:

263849
263938 FG-GAP_2

263938 - FG-GAP_2

GO Terms:

GO:0007155, GO:0007160, GO:0008305

CD Domains:

Go To Gene Page:

263938
264479 FG-GAP_2

264479 - FG-GAP_2

GO Terms:

GO:0007155, GO:0007160, GO:0008305

CD Domains:

Go To Gene Page:

264479
264557 FG-GAP_2

264557 - FG-GAP_2

GO Terms:

GO:0007155, GO:0007160, GO:0008305

CD Domains:

Go To Gene Page:

264557
264659

264659 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

264659
264660 FG-GAP_2

264660 - FG-GAP_2

GO Terms:

GO:0007155, GO:0007160, GO:0008305

CD Domains:

Go To Gene Page:

264660
264954 FG-GAP_2

264954 - FG-GAP_2

GO Terms:

GO:0007155, GO:0007160, GO:0008305

CD Domains:

Go To Gene Page:

264954
3030 hypothetical protein

3030 - hypothetical protein

GO Terms:

GO:0003677, GO:0006310

CD Domains:

Go To Gene Page:

3030
5844 hypothetical protein

5844 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5844
6604 hypothetical protein

6604 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6604
6879 hypothetical protein

6879 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6879
7300 hypothetical protein

7300 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7300
7603 hypothetical protein

7603 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7603
7608 hypothetical protein

7608 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7608
7638 hypothetical protein

7638 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7638
8289 RVT_2 superfamily

8289 - RVT_2 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

8289
8290 hypothetical protein

8290 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8290
8608 hypothetical protein

8608 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8608
867 hypothetical protein

867 - hypothetical protein

GO Terms:

GO:0008152, GO:0016491

CD Domains:

Go To Gene Page:

867
8795 hypothetical protein

8795 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8795
8874 hypothetical protein

8874 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8874
9153 hypothetical protein

9153 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9153
9642 hypothetical protein

9642 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9642
GO ID Go Term p-value q-value Cluster
GO:0007155 cell adhesion 0.0000000000972 0.000000269 Thaps_bicluster_0072
GO:0007160 cell-matrix adhesion 0.00000000000309 0.00000000857 Thaps_bicluster_0072
GO:0006310 DNA recombination 0.0536808 1 Thaps_bicluster_0072
GO:0008152 metabolism 0.708368 1 Thaps_bicluster_0072
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