Thaps_bicluster_0074 Residual: 0.37
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0074 0.37 Thalassiosira pseudonana
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Displaying 1 - 55 of 55
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10035 hypothetical protein

10035 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10035
10082 hypothetical protein

10082 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10082
10099 HMGB-UBF_HMG-box

10099 - HMGB-UBF_HMG-box

GO Terms:

GO:0003677, GO:0006355

CD Domains:

Go To Gene Page:

10099
10468 TMP_TenI

10468 - TMP_TenI

GO Terms:

GO:0004789, GO:0009228

CD Domains:

Go To Gene Page:

10468
10961 hypothetical protein

10961 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10961
11088 P4Hc

11088 - P4Hc

GO Terms:

GO:0005351, GO:0009401, GO:0016706, GO:0019538

CD Domains:

Go To Gene Page:

11088
11252 hypothetical protein

11252 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11252
11253 DDE_Tnp_4

11253 - DDE_Tnp_4

GO Terms:

NA

CD Domains:

Go To Gene Page:

11253
11330 hypothetical protein

11330 - hypothetical protein

GO Terms:

GO:0016706, GO:0019538

CD Domains:

Go To Gene Page:

11330
11515 (Tp_HSF_2.5f) HSF_DNA-bind superfamily

11515 - (Tp_HSF_2.5f) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

11515
11647 hypothetical protein

11647 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11647
11650 hypothetical protein

11650 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11650
11758 hypothetical protein

11758 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11758
11896 hypothetical protein

11896 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11896
12126 hypothetical protein

12126 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12126
1947 hypothetical protein

1947 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1947
2001 hypothetical protein

2001 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2001
20330 zf-Tim10_DDP

20330 - zf-Tim10_DDP

GO Terms:

GO:0006626, GO:0042721, GO:0045039

CD Domains:

Go To Gene Page:

20330
2042 hypothetical protein

2042 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2042
2100 hypothetical protein

2100 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2100
21363 MRP-S28 superfamily

21363 - MRP-S28 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

21363
22026 hypothetical protein

22026 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22026
24954 hypothetical protein

24954 - hypothetical protein

GO Terms:

GO:0003677, GO:0006355

CD Domains:

Go To Gene Page:

24954
263039

263039 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

263039
263627 FG-GAP_2

263627 - FG-GAP_2

GO Terms:

GO:0007155, GO:0007160, GO:0008305

CD Domains:

Go To Gene Page:

263627
263745 PDEase_I

263745 - PDEase_I

GO Terms:

GO:0004114, GO:0007165

CD Domains:

Go To Gene Page:

263745
264091

264091 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

264091
264634

264634 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

264634
264775

264775 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

264775
33377 (cycB) CYCLIN

33377 - (cycB) CYCLIN

GO Terms:

GO:0000074, GO:0005634

CD Domains:

Go To Gene Page:

33377
38726 hypothetical protein

38726 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

38726
38886 zf-Tim10_DDP

38886 - zf-Tim10_DDP

GO Terms:

GO:0006626, GO:0042721, GO:0045039

CD Domains:

Go To Gene Page:

38886
40767 DUF3523

40767 - DUF3523

GO Terms:

GO:0000166, GO:0017111, GO:0005524, GO:0016817

CD Domains:

Go To Gene Page:

40767
4431 Rhamno_transf superfamily

4431 - Rhamno_transf superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

4431
4483 hypothetical protein

4483 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4483
4813 hypothetical protein

4813 - hypothetical protein

GO Terms:

GO:0004842

CD Domains:

Go To Gene Page:

4813
6645 hypothetical protein

6645 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6645
6722 hypothetical protein

6722 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6722
7244 hypothetical protein

7244 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7244
7343 (Tp_HSF_2.3b) HSF_DNA-bind superfamily

7343 - (Tp_HSF_2.3b) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

7343
7554 hypothetical protein

7554 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7554
7768 hypothetical protein

7768 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7768
8075 DENN

8075 - DENN

GO Terms:

NA

CD Domains:

Go To Gene Page:

8075
8233 hypothetical protein

8233 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8233
8236 hypothetical protein

8236 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8236
8517 hypothetical protein

8517 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8517
879 hypothetical protein

879 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

879
8895 hypothetical protein

8895 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8895
8898 hypothetical protein

8898 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8898
8900 hypothetical protein

8900 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8900
9032 hypothetical protein

9032 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9032
9161 DDE_Tnp_1_7 superfamily

9161 - DDE_Tnp_1_7 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

9161
9279 hypothetical protein

9279 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9279
9404 hypothetical protein

9404 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9404
9867 LbetaH superfamily

9867 - LbetaH superfamily

GO Terms:

GO:0003983

CD Domains:

Go To Gene Page:

9867
GO ID Go Term p-value q-value Cluster
GO:0045039 mitochondrial inner membrane protein import 0.0000695 0.191 Thaps_bicluster_0074
GO:0006626 protein-mitochondrial targeting 0.0000695 0.191 Thaps_bicluster_0074
GO:0019538 protein metabolism 0.0109894 1 Thaps_bicluster_0074
GO:0009228 thiamin biosynthesis 0.0139887 1 Thaps_bicluster_0074
GO:0006355 regulation of transcription, DNA-dependent 0.0195945 1 Thaps_bicluster_0074
GO:0006508 proteolysis 0.0481589 1 Thaps_bicluster_0074
GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system 0.0615124 1 Thaps_bicluster_0074
GO:0007160 cell-matrix adhesion 0.0615124 1 Thaps_bicluster_0074
GO:0007155 cell adhesion 0.100523 1 Thaps_bicluster_0074
GO:0007165 signal transduction 0.13186 1 Thaps_bicluster_0074
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