Thaps_bicluster_0075 Residual: 0.50
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0075 0.50 Thalassiosira pseudonana
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Displaying 1 - 36 of 36
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10123 hypothetical protein

10123 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10123
11146 hypothetical protein

11146 - hypothetical protein

GO Terms:

GO:0005198, GO:0007155, GO:0015629

CD Domains:

Go To Gene Page:

11146
11224 hypothetical protein

11224 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11224
11680 hypothetical protein

11680 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11680
12009 hypothetical protein

12009 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12009
12040 hypothetical protein

12040 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12040
12072 hypothetical protein

12072 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12072
21170 hypothetical protein

21170 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21170
21611 Peptidase_C1A

21611 - Peptidase_C1A

GO Terms:

GO:0004197, GO:0006508, GO:0008234, GO:0016946

CD Domains:

Go To Gene Page:

21611
23684 hypothetical protein

23684 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23684
23685 hypothetical protein

23685 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23685
24575 CYCc

24575 - CYCc

GO Terms:

GO:0007242, GO:0009190, GO:0016849

CD Domains:

Go To Gene Page:

24575
25843 hypothetical protein

25843 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25843
25844 hypothetical protein

25844 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25844
25847 hypothetical protein

25847 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25847
25848 hypothetical protein

25848 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25848
263826 hypothetical protein

263826 - hypothetical protein

GO Terms:

GO:0004672, GO:0005524, GO:0006468

CD Domains:

Go To Gene Page:

263826
263827 PKc_like superfamily

263827 - PKc_like superfamily

GO Terms:

GO:0004672, GO:0005524, GO:0006468

CD Domains:

Go To Gene Page:

263827
263844 (SUOX) SO_family_Moco superfamily

263844 - (SUOX) SO_family_Moco superfamily

GO Terms:

GO:0006118, GO:0016491, GO:0008482

CD Domains:

Go To Gene Page:

263844
263906 Thioredoxin_like superfamily

263906 - Thioredoxin_like superfamily

GO Terms:

GO:0004602, GO:0006979

CD Domains:

Go To Gene Page:

263906
264748 PKc_like superfamily

264748 - PKc_like superfamily

GO Terms:

GO:0004672, GO:0005524, GO:0006468

CD Domains:

Go To Gene Page:

264748
264751 hypothetical protein

264751 - hypothetical protein

GO Terms:

GO:0004672, GO:0005524, GO:0006468

CD Domains:

Go To Gene Page:

264751
264899 NA

264899 - NA

GO Terms:

GO:0006886, GO:0016021

CD Domains:

Go To Gene Page:

264899
268793 (AMT6) amt

268793 - (AMT6) amt

GO Terms:

GO:0006810, GO:0008519, GO:0016020

CD Domains:

Go To Gene Page:

268793
269515 WD40

269515 - WD40

GO Terms:

NA

CD Domains:

Go To Gene Page:

269515
3148 Peptidase_C1A

3148 - Peptidase_C1A

GO Terms:

GO:0004197, GO:0006508, GO:0008234, GO:0016946

CD Domains:

Go To Gene Page:

3148
3345 hypothetical protein

3345 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3345
3776 CIA30 superfamily

3776 - CIA30 superfamily

GO Terms:

GO:0000287, GO:0008152, GO:0016462

CD Domains:

Go To Gene Page:

3776
4070 cysteine_hydrolases

4070 - cysteine_hydrolases

GO Terms:

GO:0003824, GO:0008152

CD Domains:

Go To Gene Page:

4070
4363 hypothetical protein

4363 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4363
5457 hypothetical protein

5457 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5457
8223 hypothetical protein

8223 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8223
8827 hypothetical protein

8827 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8827
8879 PKc

8879 - PKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

8879
9263 hypothetical protein

9263 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9263
9284 CYCc

9284 - CYCc

GO Terms:

GO:0007242, GO:0009190, GO:0016849

CD Domains:

Go To Gene Page:

9284
GO ID Go Term p-value q-value Cluster
GO:0007242 intracellular signaling cascade 0.0103131 1 Thaps_bicluster_0075
GO:0006979 response to oxidative stress 0.0857873 1 Thaps_bicluster_0075
GO:0007155 cell adhesion 0.106121 1 Thaps_bicluster_0075
GO:0006886 intracellular protein transport 0.183264 1 Thaps_bicluster_0075
GO:0006508 proteolysis and peptidolysis 0.291332 1 Thaps_bicluster_0075
GO:0008152 metabolism 0.454833 1 Thaps_bicluster_0075
GO:0006810 transport 0.503087 1 Thaps_bicluster_0075
GO:0006118 electron transport 0.639396 1 Thaps_bicluster_0075
GO:0006468 protein amino acid phosphorylation 0.000845611 1 Thaps_bicluster_0075
GO:0009190 cyclic nucleotide biosynthesis 0.00289141 1 Thaps_bicluster_0075
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