Thaps_bicluster_0082 Residual: 0.46
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0082 0.46 Thalassiosira pseudonana
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Displaying 1 - 52 of 52
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10460 hypothetical protein

10460 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10460
10595 Rtt106

10595 - Rtt106

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

10595
10661 hypothetical protein

10661 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

10661
1195 hypothetical protein

1195 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1195
12160 hypothetical protein

12160 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12160
12983 PKc_like superfamily

12983 - PKc_like superfamily

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0003676, GO:0004522, GO:0004674

CD Domains:

Go To Gene Page:

12983
13343 Uup

13343 - Uup

GO Terms:

GO:0005524, GO:0016887, GO:0000166, GO:0017111, GO:0004298, GO:0004299

CD Domains:

Go To Gene Page:

13343
1903 LRR_RI superfamily

1903 - LRR_RI superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

1903
19813 AdoMet_dc

19813 - AdoMet_dc

GO Terms:

NA

CD Domains:

Go To Gene Page:

19813
20751 hypothetical protein

20751 - hypothetical protein

GO Terms:

GO:0003755, GO:0004600, GO:0030051, GO:0042027

CD Domains:

Go To Gene Page:

20751
20909 hypothetical protein

20909 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20909
21213 hypothetical protein

21213 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21213
21316 hypothetical protein

21316 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21316
21349 COG4857 superfamily

21349 - COG4857 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

21349
21392 hypothetical protein

21392 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21392
22057 PI-PLCc_At5g67130_like

22057 - PI-PLCc_At5g67130_like

GO Terms:

NA

CD Domains:

Go To Gene Page:

22057
22495 hypothetical protein

22495 - hypothetical protein

GO Terms:

GO:0000074

CD Domains:

Go To Gene Page:

22495
22960 hypothetical protein

22960 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22960
23335 hypothetical protein

23335 - hypothetical protein

GO Terms:

GO:0000151, GO:0004842, GO:0008270, GO:0016567

CD Domains:

Go To Gene Page:

23335
23431 LRR_RI superfamily

23431 - LRR_RI superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

23431
23543 hypothetical protein

23543 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23543
23796 hypothetical protein

23796 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23796
23890 WcaG

23890 - WcaG

GO Terms:

GO:0008152, GO:0016491

CD Domains:

Go To Gene Page:

23890
24028 hypothetical protein

24028 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24028
25095 hypothetical protein

25095 - hypothetical protein

GO Terms:

GO:0004339

CD Domains:

Go To Gene Page:

25095
25294 hypothetical protein

25294 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25294
25476 OTU

25476 - OTU

GO Terms:

GO:0003755, GO:0004600, GO:0030051, GO:0042027

CD Domains:

Go To Gene Page:

25476
25739 vWFA

25739 - vWFA

GO Terms:

GO:0003735, GO:0005622, GO:0005840, GO:0006412

CD Domains:

Go To Gene Page:

25739
260917 PDEase_I

260917 - PDEase_I

GO Terms:

GO:0004114, GO:0007165, GO:0003824

CD Domains:

Go To Gene Page:

260917
262567 Aldo_ket_red

262567 - Aldo_ket_red

GO Terms:

GO:0016491, GO:0008708, GO:0008726, GO:0016614, GO:0018446, GO:0018447, GO:0018448, GO:0018449, GO:0018450, GO:0042469, GO:0045703

CD Domains:

Go To Gene Page:

262567
262924 PP2Cc

262924 - PP2Cc

GO Terms:

GO:0003824

CD Domains:

Go To Gene Page:

262924
263461 arsM

263461 - arsM

GO Terms:

GO:0008757, GO:0008168

CD Domains:

Go To Gene Page:

263461
263887 S_TKc

263887 - S_TKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

263887
264297 MhpC

264297 - MhpC

GO Terms:

GO:0003824, GO:0006725, GO:0016787

CD Domains:

Go To Gene Page:

264297
264671 S_TKc

264671 - S_TKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

264671
269258 hypothetical protein

269258 - hypothetical protein

GO Terms:

GO:0004190, GO:0006508

CD Domains:

Go To Gene Page:

269258
3255 hypothetical protein

3255 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3255
32934 Rhomboid

32934 - Rhomboid

GO Terms:

NA

CD Domains:

Go To Gene Page:

32934
33209 hypothetical protein

33209 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

33209
3614 hypothetical protein

3614 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3614
36443 Peptidase_C14

36443 - Peptidase_C14

GO Terms:

GO:0006508, GO:0030693

CD Domains:

Go To Gene Page:

36443
36702 pyr_form_ly_1

36702 - pyr_form_ly_1

GO Terms:

GO:0003824, GO:0008152, GO:0005737, GO:0006006, GO:0008861

CD Domains:

Go To Gene Page:

36702
38597 pyr_form_ly_1

38597 - pyr_form_ly_1

GO Terms:

GO:0003824, GO:0008152, GO:0005737, GO:0006006, GO:0008861

CD Domains:

Go To Gene Page:

38597
3870 CIA30 superfamily

3870 - CIA30 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

3870
38760 pyr_form_ly_1

38760 - pyr_form_ly_1

GO Terms:

GO:0003824, GO:0008152, GO:0005737, GO:0006006, GO:0008861

CD Domains:

Go To Gene Page:

38760
38845 ABCC_MRP_domain2

38845 - ABCC_MRP_domain2

GO Terms:

GO:0005524, GO:0006810, GO:0016021, GO:0042626, GO:0016887, GO:0000166, GO:0017111

CD Domains:

Go To Gene Page:

38845
42545 PA superfamily

42545 - PA superfamily

GO Terms:

GO:0006508, GO:0008233

CD Domains:

Go To Gene Page:

42545
5456 hypothetical protein

5456 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5456
5880 hypothetical protein

5880 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5880
6743 hypothetical protein

6743 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6743
7497 BCNT

7497 - BCNT

GO Terms:

NA

CD Domains:

Go To Gene Page:

7497
9463 hypothetical protein

9463 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9463
GO ID Go Term p-value q-value Cluster
GO:0006725 aromatic compound metabolism 0.0831178 1 Thaps_bicluster_0082
GO:0006006 glucose metabolism 0.00000606 0.0167382 Thaps_bicluster_0082
GO:0008152 metabolism 0.0696085 1 Thaps_bicluster_0082
GO:0006468 protein amino acid phosphorylation 0.0484723 1 Thaps_bicluster_0082
GO:0006412 protein biosynthesis 0.485607 1 Thaps_bicluster_0082
GO:0016567 protein ubiquitination 0.269091 1 Thaps_bicluster_0082
GO:0006508 proteolysis and peptidolysis 0.0999218 1 Thaps_bicluster_0082
GO:0000074 regulation of cell cycle 0.211484 1 Thaps_bicluster_0082
GO:0007165 signal transduction 0.146211 1 Thaps_bicluster_0082
GO:0006810 transport 0.52206 1 Thaps_bicluster_0082
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