Thaps_bicluster_0092 Residual: 0.42
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0092 0.42 Thalassiosira pseudonana
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Displaying 1 - 43 of 43
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10136 PRK00409

10136 - PRK00409

GO Terms:

GO:0003684, GO:0005524, GO:0006298, GO:0006259

CD Domains:

Go To Gene Page:

10136
11079 hypothetical protein

11079 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11079
11163 hypothetical protein

11163 - hypothetical protein

GO Terms:

GO:0006457, GO:0031072, GO:0051082

CD Domains:

Go To Gene Page:

11163
11196 hypothetical protein

11196 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11196
11271 hypothetical protein

11271 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11271
11273 hypothetical protein

11273 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11273
11751 hypothetical protein

11751 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11751
11788 hypothetical protein

11788 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11788
1761 DUF1499

1761 - DUF1499

GO Terms:

NA

CD Domains:

Go To Gene Page:

1761
1785 (Tp_HSF_1.3d) HSF_DNA-bind superfamily

1785 - (Tp_HSF_1.3d) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

1785
18078 Gph

18078 - Gph

GO Terms:

GO:0003824, GO:0008152, GO:0008967

CD Domains:

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18078
22148 hypothetical protein

22148 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22148
22511 Delta9-FADS-like

22511 - Delta9-FADS-like

GO Terms:

GO:0004768, GO:0005506, GO:0005783, GO:0006633, GO:0016020, GO:0016491

CD Domains:

Go To Gene Page:

22511
22871 hypothetical protein

22871 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22871
23129 hypothetical protein

23129 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23129
24348 ICL_PEPM

24348 - ICL_PEPM

GO Terms:

GO:0003824, GO:0008152, GO:0050188

CD Domains:

Go To Gene Page:

24348
25480 (Tp_Myb2R8) regulator [Rayko]

25480 - (Tp_Myb2R8) regulator [Rayko]

GO Terms:

GO:0003677, GO:0005634, GO:0004339

CD Domains:

Go To Gene Page:

25480
25488 hypothetical protein

25488 - hypothetical protein

GO Terms:

GO:0006508, GO:0008237, GO:0008270

CD Domains:

Go To Gene Page:

25488
261572 (SPR1) NADB_Rossmann superfamily

261572 - (SPR1) NADB_Rossmann superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

261572
262028 hypothetical protein

262028 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

262028
262029 (ACBP1) ACBP superfamily

262029 - (ACBP1) ACBP superfamily

GO Terms:

GO:0000062

CD Domains:

Go To Gene Page:

262029
262946 (CPF1) FAD_binding_7

262946 - (CPF1) FAD_binding_7

GO Terms:

GO:0003913, GO:0006281, GO:0003904

CD Domains:

Go To Gene Page:

262946
263180 SufS_like

263180 - SufS_like

GO Terms:

GO:0008152, GO:0008483, GO:0006534, GO:0030170, GO:0031071, GO:0009000

CD Domains:

Go To Gene Page:

263180
263655 NAD_binding_8 superfamily

263655 - NAD_binding_8 superfamily

GO Terms:

GO:0006118, GO:0016491

CD Domains:

Go To Gene Page:

263655
32153 (HDP1) PLN02875

32153 - (HDP1) PLN02875

GO Terms:

GO:0003868, GO:0009072

CD Domains:

Go To Gene Page:

32153
32546 (DES1) Delta6-FADS-like

32546 - (DES1) Delta6-FADS-like

GO Terms:

GO:0016491, GO:0006636, GO:0016020, GO:0016717, GO:0016213

CD Domains:

Go To Gene Page:

32546
35200 FKBP_C

35200 - FKBP_C

GO Terms:

GO:0006457, GO:0003755, GO:0004600, GO:0030051, GO:0042027

CD Domains:

Go To Gene Page:

35200
37280 AarF

37280 - AarF

GO Terms:

NA

CD Domains:

Go To Gene Page:

37280
4961 hypothetical protein

4961 - hypothetical protein

GO Terms:

GO:0003824

CD Domains:

Go To Gene Page:

4961
5220 hypothetical protein

5220 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5220
5504 hypothetical protein

5504 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5504
5555 PAP_fibrillin superfamily

5555 - PAP_fibrillin superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

5555
5687 AAA_26

5687 - AAA_26

GO Terms:

NA

CD Domains:

Go To Gene Page:

5687
5874 hypothetical protein

5874 - hypothetical protein

GO Terms:

GO:0004672, GO:0005524, GO:0006468

CD Domains:

Go To Gene Page:

5874
6991 hypothetical protein

6991 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6991
7037 Aldo_ket_red

7037 - Aldo_ket_red

GO Terms:

GO:0016491, GO:0051341

CD Domains:

Go To Gene Page:

7037
7458 Asp_Arg_Hydrox superfamily

7458 - Asp_Arg_Hydrox superfamily

GO Terms:

GO:0004597, GO:0018193, GO:0030176

CD Domains:

Go To Gene Page:

7458
8311 hypothetical protein

8311 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8311
8523 hypothetical protein

8523 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8523
9051 hypothetical protein

9051 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9051
9097 hypothetical protein

9097 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9097
9163 hypothetical protein

9163 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9163
9373 hypothetical protein

9373 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9373
GO ID Go Term p-value q-value Cluster
GO:0006534 cysteine metabolism 0.00372131 1 Thaps_bicluster_0092
GO:0018193 peptidyl-amino acid modification 0.00742955 1 Thaps_bicluster_0092
GO:0009072 aromatic amino acid family metabolism 0.0111247 1 Thaps_bicluster_0092
GO:0006636 fatty acid desaturation 0.0438019 1 Thaps_bicluster_0092
GO:0006259 DNA metabolism 0.0509236 1 Thaps_bicluster_0092
GO:0006298 mismatch repair 0.0579953 1 Thaps_bicluster_0092
GO:0006633 fatty acid biosynthesis 0.0685095 1 Thaps_bicluster_0092
GO:0051341 regulation of oxidoreductase activity 0.0823561 1 Thaps_bicluster_0092
GO:0006457 protein folding 0.0828758 1 Thaps_bicluster_0092
GO:0006281 DNA repair 0.158277 1 Thaps_bicluster_0092
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