Thaps_bicluster_0093 Residual: 0.41
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0093 0.41 Thalassiosira pseudonana
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Displaying 1 - 40 of 40
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10169 hypothetical protein

10169 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10169
10738 DUF839 superfamily

10738 - DUF839 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

10738
11102 hypothetical protein

11102 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11102
11205 hypothetical protein

11205 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11205
11234 hypothetical protein

11234 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11234
11296 (Tp_fungal_TRF3) regulator [Rayko]

11296 - (Tp_fungal_TRF3) regulator [Rayko]

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0008270

CD Domains:

Go To Gene Page:

11296
12141 metX superfamily

12141 - metX superfamily

GO Terms:

GO:0004414

CD Domains:

Go To Gene Page:

12141
13064 GCS superfamily

13064 - GCS superfamily

GO Terms:

GO:0004357, GO:0006750, GO:0017109

CD Domains:

Go To Gene Page:

13064
1526 SEC14

1526 - SEC14

GO Terms:

NA

CD Domains:

Go To Gene Page:

1526
17310 HP_PGM_like

17310 - HP_PGM_like

GO Terms:

GO:0003824, GO:0008152

CD Domains:

Go To Gene Page:

17310
1995 hypothetical protein

1995 - hypothetical protein

GO Terms:

GO:0004630

CD Domains:

Go To Gene Page:

1995
2035 hypothetical protein

2035 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2035
21067 FMN_red

21067 - FMN_red

GO Terms:

NA

CD Domains:

Go To Gene Page:

21067
21149 hypothetical protein

21149 - hypothetical protein

GO Terms:

GO:0005509

CD Domains:

Go To Gene Page:

21149
22141 hypothetical protein

22141 - hypothetical protein

GO Terms:

GO:0004339

CD Domains:

Go To Gene Page:

22141
23916 hypothetical protein

23916 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23916
24008 hypothetical protein

24008 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24008
24720 hypothetical protein

24720 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24720
25074 Beta_propel

25074 - Beta_propel

GO Terms:

NA

CD Domains:

Go To Gene Page:

25074
25470 hypothetical protein

25470 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25470
25556 hypothetical protein

25556 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25556
25604 hypothetical protein

25604 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25604
264282 Motor_domain superfamily

264282 - Motor_domain superfamily

GO Terms:

GO:0003777, GO:0005524, GO:0005875, GO:0007018, GO:0004003, GO:0004004, GO:0008026, GO:0008094, GO:0008186, GO:0015462, GO:0015616, GO:0016887, GO:0017116, GO:0042623, GO:0042624, GO:0042625, GO:0042626

CD Domains:

Go To Gene Page:

264282
269231 MFS

269231 - MFS

GO Terms:

GO:0005215, GO:0006810, GO:0016021, GO:0016020

CD Domains:

Go To Gene Page:

269231
269633 hypothetical protein

269633 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

269633
27550 NAD_bind_amino_acid_DH superfamily

27550 - NAD_bind_amino_acid_DH superfamily

GO Terms:

GO:0003824, GO:0009396, GO:0004486, GO:0004487

CD Domains:

Go To Gene Page:

27550
29212 (GSHS) PLN02977

29212 - (GSHS) PLN02977

GO Terms:

GO:0004363, GO:0006750, GO:0005524

CD Domains:

Go To Gene Page:

29212
32744 VacB

32744 - VacB

GO Terms:

GO:0003723, GO:0004540, GO:0000175, GO:0004534, GO:0016896

CD Domains:

Go To Gene Page:

32744
33580 ABCC_MRP_domain2

33580 - ABCC_MRP_domain2

GO Terms:

GO:0005524, GO:0006810, GO:0016021, GO:0042626, GO:0016887, GO:0000166, GO:0017111

CD Domains:

Go To Gene Page:

33580
35342 Dynein_heavy superfamily

35342 - Dynein_heavy superfamily

GO Terms:

GO:0004197, GO:0006508, GO:0005524, GO:0016887, GO:0000166, GO:0017111

CD Domains:

Go To Gene Page:

35342
36273 Alpha_ANH_like_IV

36273 - Alpha_ANH_like_IV

GO Terms:

NA

CD Domains:

Go To Gene Page:

36273
37979 WD40

37979 - WD40

GO Terms:

GO:0003847

CD Domains:

Go To Gene Page:

37979
6589 hypothetical protein

6589 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6589
6706 hypothetical protein

6706 - hypothetical protein

GO Terms:

GO:0003677, GO:0006355

CD Domains:

Go To Gene Page:

6706
6894 COG1741

6894 - COG1741

GO Terms:

NA

CD Domains:

Go To Gene Page:

6894
7070 hypothetical protein

7070 - hypothetical protein

GO Terms:

GO:0005261, GO:0006812, GO:0016020

CD Domains:

Go To Gene Page:

7070
8004 Phytase-like

8004 - Phytase-like

GO Terms:

NA

CD Domains:

Go To Gene Page:

8004
8934 hypothetical protein

8934 - hypothetical protein

GO Terms:

GO:0003824, GO:0006633, GO:0004553, GO:0005576, GO:0005975, GO:0030246, GO:0004339

CD Domains:

Go To Gene Page:

8934
9175 COG3899

9175 - COG3899

GO Terms:

NA

CD Domains:

Go To Gene Page:

9175
9633 hypothetical protein

9633 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9633
GO ID Go Term p-value q-value Cluster
GO:0006750 glutathione biosynthesis 0.00000667 0.0184065 Thaps_bicluster_0093
GO:0009396 folic acid and derivative biosynthesis 0.0186738 1 Thaps_bicluster_0093
GO:0006633 fatty acid biosynthesis 0.0499389 1 Thaps_bicluster_0093
GO:0006810 transport 0.0852716 1 Thaps_bicluster_0093
GO:0007018 microtubule-based movement 0.109729 1 Thaps_bicluster_0093
GO:0006812 cation transport 0.109729 1 Thaps_bicluster_0093
GO:0005975 carbohydrate metabolism 0.184052 1 Thaps_bicluster_0093
GO:0006355 regulation of transcription, DNA-dependent 0.197871 1 Thaps_bicluster_0093
GO:0006508 proteolysis and peptidolysis 0.550247 1 Thaps_bicluster_0093
GO:0008152 metabolism 0.681496 1 Thaps_bicluster_0093
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