Thaps_bicluster_0139 Residual: 0.40
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0139 0.40 Thalassiosira pseudonana
" class="views-fluidgrid-wrapper clear-block">
Displaying 1 - 28 of 28
" class="views-fluidgrid-wrapper clear-block">
10969 hypothetical protein

10969 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10969
1861 hypothetical protein

1861 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1861
19465 Thioredoxin_like superfamily

19465 - Thioredoxin_like superfamily

GO Terms:

GO:0005489, GO:0006118

CD Domains:

Go To Gene Page:

19465
20069 Ribosomal_P2

20069 - Ribosomal_P2

GO Terms:

GO:0003735, GO:0005622, GO:0005840, GO:0006414

CD Domains:

Go To Gene Page:

20069
21669 hypothetical protein

21669 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21669
21888 hypothetical protein

21888 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21888
22610 (RL4e) PLN00185

22610 - (RL4e) PLN00185

GO Terms:

GO:0003735, GO:0005622, GO:0005840, GO:0006412

CD Domains:

Go To Gene Page:

22610
23471 DUF92 superfamily

23471 - DUF92 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

23471
23855 Ribosomal_P1_P2_L12p superfamily

23855 - Ribosomal_P1_P2_L12p superfamily

GO Terms:

GO:0003735, GO:0005622, GO:0005840, GO:0006414

CD Domains:

Go To Gene Page:

23855
23935 hypothetical protein

23935 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23935
24225 hypothetical protein

24225 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24225
24914 hypothetical protein

24914 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24914
25508 hypothetical protein

25508 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25508
261176 Hydrolase_4 superfamily

261176 - Hydrolase_4 superfamily

GO Terms:

GO:0003824, GO:0004177, GO:0006508, GO:0016804

CD Domains:

Go To Gene Page:

261176
262046 (MGT1) MgtE

262046 - (MGT1) MgtE

GO Terms:

GO:0006812, GO:0008324

CD Domains:

Go To Gene Page:

262046
262361 GH16_fungal_KRE6_glucanase

262361 - GH16_fungal_KRE6_glucanase

GO Terms:

NA

CD Domains:

Go To Gene Page:

262361
263122 AarF

263122 - AarF

GO Terms:

NA

CD Domains:

Go To Gene Page:

263122
26418 S26_SPase_I

26418 - S26_SPase_I

GO Terms:

GO:0006465, GO:0006508, GO:0008233, GO:0016020, GO:0008236, GO:0009004

CD Domains:

Go To Gene Page:

26418
27656 (hsp70_4) PTZ00009

27656 - (hsp70_4) PTZ00009

GO Terms:

GO:0005524

CD Domains:

Go To Gene Page:

27656
28425 (RS19) Ribosomal_S19e

28425 - (RS19) Ribosomal_S19e

GO Terms:

GO:0003735, GO:0005622, GO:0005840, GO:0006412

CD Domains:

Go To Gene Page:

28425
3344 Mpv17_PMP22

3344 - Mpv17_PMP22

GO Terms:

GO:0003676, GO:0016021

CD Domains:

Go To Gene Page:

3344
33906 DnaJ

33906 - DnaJ

GO Terms:

GO:0006457, GO:0031072, GO:0051082

CD Domains:

Go To Gene Page:

33906
34093 COG1691

34093 - COG1691

GO Terms:

GO:0004638, GO:0006189, GO:0009320

CD Domains:

Go To Gene Page:

34093
3945 hypothetical protein

3945 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3945
7955 hypothetical protein

7955 - hypothetical protein

GO Terms:

GO:0000074

CD Domains:

Go To Gene Page:

7955
8011 AAT_I superfamily

8011 - AAT_I superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

8011
9323 hypothetical protein

9323 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9323
9466 DER1 superfamily

9466 - DER1 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

9466
GO ID Go Term p-value q-value Cluster
GO:0006414 translational elongation 0.00000418 0.011559 Thaps_bicluster_0139
GO:0006465 signal peptide processing 0.0115308 1 Thaps_bicluster_0139
GO:0006189 'de novo' IMP biosynthesis 0.0143942 1 Thaps_bicluster_0139
GO:0006412 protein biosynthesis 0.081324 1 Thaps_bicluster_0139
GO:0006812 cation transport 0.117664 1 Thaps_bicluster_0139
GO:0000074 regulation of cell cycle 0.16053 1 Thaps_bicluster_0139
GO:0006508 proteolysis and peptidolysis 0.201185 1 Thaps_bicluster_0139
GO:0006457 protein folding 0.317461 1 Thaps_bicluster_0139
GO:0006118 electron transport 0.547503 1 Thaps_bicluster_0139
Log in to post comments