Thaps_bicluster_0146 Residual: 0.45
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0146 0.45 Thalassiosira pseudonana
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Displaying 1 - 38 of 38
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11098 GH99_GH71_like_2

11098 - GH99_GH71_like_2

GO Terms:

NA

CD Domains:

Go To Gene Page:

11098
11165 hypothetical protein

11165 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11165
11364 hypothetical protein

11364 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11364
11411 (CSN1) CS_ACL-C_CCL superfamily

11411 - (CSN1) CS_ACL-C_CCL superfamily

GO Terms:

GO:0006092, GO:0046912, GO:0004108, GO:0005737, GO:0006099

CD Domains:

Go To Gene Page:

11411
11569 hypothetical protein

11569 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11569
11660 hypothetical protein

11660 - hypothetical protein

GO Terms:

GO:0004003, GO:0004004, GO:0008026, GO:0008094, GO:0008186, GO:0015462, GO:0015616, GO:0016887, GO:0017116, GO:0042623, GO:0042624, GO:0042625, GO:0042626

CD Domains:

Go To Gene Page:

11660
11868 hypothetical protein

11868 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11868
17302 Bacterial_IMPase_like_1

17302 - Bacterial_IMPase_like_1

GO Terms:

GO:0004437, GO:0008934

CD Domains:

Go To Gene Page:

17302
20641 hypothetical protein

20641 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

20641
21177 (LAT1_2) lipoyl_domain

21177 - (LAT1_2) lipoyl_domain

GO Terms:

GO:0004742, GO:0009351, GO:0030523

CD Domains:

Go To Gene Page:

21177
22213 (PFK2) PFK superfamily

22213 - (PFK2) PFK superfamily

GO Terms:

GO:0003872, GO:0005945, GO:0006096

CD Domains:

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22213
22483 hypothetical protein

22483 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22483
22565 UhpC

22565 - UhpC

GO Terms:

GO:0005215, GO:0006810, GO:0016021

CD Domains:

Go To Gene Page:

22565
23850 hypothetical protein

23850 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23850
24346 hypothetical protein

24346 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24346
24390 hypothetical protein

24390 - hypothetical protein

GO Terms:

GO:0004003, GO:0004004, GO:0008026, GO:0008094, GO:0008186, GO:0015462, GO:0015616, GO:0016887, GO:0017116, GO:0042623, GO:0042624, GO:0042625, GO:0042626

CD Domains:

Go To Gene Page:

24390
25243 hypothetical protein

25243 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25243
25353 hypothetical protein

25353 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25353
25441 hypothetical protein

25441 - hypothetical protein

GO Terms:

GO:0004339

CD Domains:

Go To Gene Page:

25441
25518 hypothetical protein

25518 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25518
25803 hypothetical protein

25803 - hypothetical protein

GO Terms:

GO:0003998

CD Domains:

Go To Gene Page:

25803
264344 PDEase_I

264344 - PDEase_I

GO Terms:

GO:0004114, GO:0007165, GO:0051342

CD Domains:

Go To Gene Page:

264344
264537 Aa_trans superfamily

264537 - Aa_trans superfamily

GO Terms:

GO:0005279, GO:0006865, GO:0016020

CD Domains:

Go To Gene Page:

264537
264891 Glyco_hydro_30 superfamily

264891 - Glyco_hydro_30 superfamily

GO Terms:

GO:0004348, GO:0005764, GO:0006665, GO:0007040

CD Domains:

Go To Gene Page:

264891
268965 (acnB) PLN00094

268965 - (acnB) PLN00094

GO Terms:

GO:0008152, GO:0016829, GO:0003994, GO:0006099

CD Domains:

Go To Gene Page:

268965
270136 OAT_like

270136 - OAT_like

GO Terms:

GO:0006525, GO:0008483, GO:0030170, GO:0003992

CD Domains:

Go To Gene Page:

270136
270138 (GLNN) GSIII_N superfamily

270138 - (GLNN) GSIII_N superfamily

GO Terms:

GO:0004356, GO:0006807

CD Domains:

Go To Gene Page:

270138
28635 hypothetical protein

28635 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

28635
34592 PLN03116

34592 - PLN03116

GO Terms:

GO:0006118, GO:0016491, GO:0004324, GO:0015039

CD Domains:

Go To Gene Page:

34592
36716 (LPD) PRK06327

36716 - (LPD) PRK06327

GO Terms:

GO:0006118, GO:0016491, GO:0050660, GO:0015036, GO:0005737, GO:0004148

CD Domains:

Go To Gene Page:

36716
411 (SCS2) PTZ00187

411 - (SCS2) PTZ00187

GO Terms:

GO:0003824, GO:0008152, GO:0004776, GO:0042709, GO:0045244

CD Domains:

Go To Gene Page:

411
5828 hypothetical protein

5828 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5828
6539 hypothetical protein

6539 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

6539
7337 hypothetical protein

7337 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7337
7540 HP_PGM_like

7540 - HP_PGM_like

GO Terms:

GO:0003824, GO:0008152

CD Domains:

Go To Gene Page:

7540
8101 TLD

8101 - TLD

GO Terms:

NA

CD Domains:

Go To Gene Page:

8101
8844 hypothetical protein

8844 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8844
GO ID Go Term p-value q-value Cluster
GO:0006099 tricarboxylic acid cycle 0.000514669 1 Thaps_bicluster_0146
GO:0007040 lysosome organization and biogenesis 0.00351458 1 Thaps_bicluster_0146
GO:0006092 main pathways of carbohydrate metabolism 0.00351458 1 Thaps_bicluster_0146
GO:0006665 sphingolipid metabolism 0.00351458 1 Thaps_bicluster_0146
GO:0006525 arginine metabolism 0.0105089 1 Thaps_bicluster_0146
GO:0051342 regulation of cyclic nucleotide phosphodiesterase activity 0.017457 1 Thaps_bicluster_0146
GO:0006807 nitrogen compound metabolism 0.0380267 1 Thaps_bicluster_0146
GO:0006865 amino acid transport 0.0973311 1 Thaps_bicluster_0146
GO:0006096 glycolysis 0.122569 1 Thaps_bicluster_0146
GO:0007165 signal transduction 0.13186 1 Thaps_bicluster_0146
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