Thaps_bicluster_0150 Residual: 0.38
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0150 0.38 Thalassiosira pseudonana
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Displaying 1 - 33 of 33
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11213 PhyH superfamily

11213 - PhyH superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

11213
1310 DadA

1310 - DadA

GO Terms:

GO:0006118, GO:0016491, GO:0003884

CD Domains:

Go To Gene Page:

1310
21640 Iso_dh superfamily

21640 - Iso_dh superfamily

GO Terms:

GO:0008152, GO:0016491, GO:0005509, GO:0004448, GO:0004450

CD Domains:

Go To Gene Page:

21640
22651 hypothetical protein

22651 - hypothetical protein

GO Terms:

GO:0000074, GO:0005634

CD Domains:

Go To Gene Page:

22651
22670 hypothetical protein

22670 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22670
22671 UbiH

22671 - UbiH

GO Terms:

GO:0004497, GO:0006725

CD Domains:

Go To Gene Page:

22671
22752 hypothetical protein

22752 - hypothetical protein

GO Terms:

GO:0005215, GO:0006810

CD Domains:

Go To Gene Page:

22752
22795 hypothetical protein

22795 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22795
22957 hypothetical protein

22957 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22957
24379 hypothetical protein

24379 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24379
24448 hypothetical protein

24448 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24448
24999 hypothetical protein

24999 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24999
25330 hypothetical protein

25330 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25330
25391 hypothetical protein

25391 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25391
260922 Leu_Phe_trans superfamily

260922 - Leu_Phe_trans superfamily

GO Terms:

GO:0016755, GO:0030163

CD Domains:

Go To Gene Page:

260922
261614 SPRY_RanBP_like

261614 - SPRY_RanBP_like

GO Terms:

GO:0016755, GO:0030163

CD Domains:

Go To Gene Page:

261614
262236 2A0303

262236 - 2A0303

GO Terms:

GO:0005279, GO:0006865, GO:0016020, GO:0006810

CD Domains:

Go To Gene Page:

262236
264005 Glyco_hydrolase_16 superfamily

264005 - Glyco_hydrolase_16 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

264005
268280 (LAT2) PDHac_trf_mito

268280 - (LAT2) PDHac_trf_mito

GO Terms:

GO:0008152, GO:0008415, GO:0005515, GO:0004742, GO:0009351, GO:0030523

CD Domains:

Go To Gene Page:

268280
268374 (PDHA1) TPP_E1_PDC_ADC_BCADC

268374 - (PDHA1) TPP_E1_PDC_ADC_BCADC

GO Terms:

GO:0008152, GO:0016624, GO:0004739

CD Domains:

Go To Gene Page:

268374
268581 hypothetical protein

268581 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

268581
269160 (gltD) GltD

269160 - (gltD) GltD

GO Terms:

GO:0006118, GO:0016491, GO:0005975, GO:0015036, GO:0006537, GO:0016639, GO:0004355, GO:0009342, GO:0045181

CD Domains:

Go To Gene Page:

269160
29861 gltB

29861 - gltB

GO Terms:

GO:0008152, GO:0016491, GO:0006537, GO:0015930, GO:0006807, GO:0004355, GO:0009342, GO:0045181

CD Domains:

Go To Gene Page:

29861
31818 Mito_carr

31818 - Mito_carr

GO Terms:

GO:0005488, GO:0006810, GO:0016020

CD Domains:

Go To Gene Page:

31818
32366 Pumilio

32366 - Pumilio

GO Terms:

GO:0003723, GO:0016071

CD Domains:

Go To Gene Page:

32366
41979 PRK06116

41979 - PRK06116

GO Terms:

GO:0006118, GO:0016491, GO:0050660, GO:0015036, GO:0005737, GO:0004362, GO:0006749

CD Domains:

Go To Gene Page:

41979
5080 hypothetical protein

5080 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5080
7134 hypothetical protein

7134 - hypothetical protein

GO Terms:

GO:0005554, GO:0016021

CD Domains:

Go To Gene Page:

7134
7491 HA

7491 - HA

GO Terms:

NA

CD Domains:

Go To Gene Page:

7491
8309 Pkinase

8309 - Pkinase

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004674

CD Domains:

Go To Gene Page:

8309
8778 (PDHB1) PLN02683

8778 - (PDHB1) PLN02683

GO Terms:

GO:0004739

CD Domains:

Go To Gene Page:

8778
9498 Glyco_hydro_72 superfamily

9498 - Glyco_hydro_72 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

9498
9499 Hydrolase_3

9499 - Hydrolase_3

GO Terms:

GO:0008152, GO:0016787, GO:0005524, GO:0006812, GO:0015662, GO:0016020, GO:0003824

CD Domains:

Go To Gene Page:

9499
GO ID Go Term p-value q-value Cluster
GO:0006537 glutamate biosynthesis 0.000140731 0.385321 Thaps_bicluster_0150
GO:0006118 electron transport 0.142427 1 Thaps_bicluster_0150
GO:0006812 cation transport 0.193316 1 Thaps_bicluster_0150
GO:0000074 regulation of cell cycle 0.259394 1 Thaps_bicluster_0150
GO:0005975 carbohydrate metabolism 0.313362 1 Thaps_bicluster_0150
GO:0006468 protein amino acid phosphorylation 0.66158 1 Thaps_bicluster_0150
GO:0030163 protein catabolism 0.00178022 1 Thaps_bicluster_0150
GO:0006749 glutathione metabolism 0.00989991 1 Thaps_bicluster_0150
GO:0016071 mRNA metabolism 0.0438152 1 Thaps_bicluster_0150
GO:0008152 metabolism 0.0459954 1 Thaps_bicluster_0150
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