Thaps_bicluster_0167 Residual: 0.37
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0167 0.37 Thalassiosira pseudonana
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Displaying 1 - 29 of 29
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10447 hypothetical protein

10447 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10447
11029 hypothetical protein

11029 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11029
11267 Cyclin_N

11267 - Cyclin_N

GO Terms:

GO:0000074

CD Domains:

Go To Gene Page:

11267
21000 cyclin protein

21000 - cyclin protein

GO Terms:

GO:0000074, GO:0005634

CD Domains:

Go To Gene Page:

21000
21661 hypothetical protein

21661 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21661
21663 hypothetical protein

21663 - hypothetical protein

GO Terms:

GO:0003755, GO:0004600, GO:0030051, GO:0042027

CD Domains:

Go To Gene Page:

21663
21808 hypothetical protein

21808 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

21808
22002 hypothetical protein

22002 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

22002
22003 hypothetical protein

22003 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22003
22237 hypothetical protein

22237 - hypothetical protein

GO Terms:

GO:0005576, GO:0006030, GO:0008061

CD Domains:

Go To Gene Page:

22237
23374 hypothetical protein

23374 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23374
23701 hypothetical protein

23701 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23701
24500 hypothetical protein

24500 - hypothetical protein

GO Terms:

GO:0003677, GO:0006355

CD Domains:

Go To Gene Page:

24500
24521 (GFA_1) PTZ00295

24521 - (GFA_1) PTZ00295

GO Terms:

GO:0008152, GO:0005529, GO:0005975, GO:0004360

CD Domains:

Go To Gene Page:

24521
25428 hypothetical protein

25428 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25428
25430 hypothetical protein

25430 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25430
25591 hypothetical protein

25591 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25591
25816 hypothetical protein

25816 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25816
262146 Chitin_synth_2

262146 - Chitin_synth_2

GO Terms:

GO:0016758

CD Domains:

Go To Gene Page:

262146
262151 Chitin_synth_2

262151 - Chitin_synth_2

GO Terms:

GO:0016758

CD Domains:

Go To Gene Page:

262151
263298 Chitin_synth_C

263298 - Chitin_synth_C

GO Terms:

GO:0016758, GO:0004100

CD Domains:

Go To Gene Page:

263298
268354 hypothetical protein

268354 - hypothetical protein

GO Terms:

GO:0000074

CD Domains:

Go To Gene Page:

268354
269826 cyclin, cyclin d, cell cycle control

269826 - cyclin, cyclin d, cell cycle control

GO Terms:

GO:0000074

CD Domains:

Go To Gene Page:

269826
27836 Chitin_synth_C

27836 - Chitin_synth_C

GO Terms:

GO:0016758, GO:0004100

CD Domains:

Go To Gene Page:

27836
36889 S_TKc

36889 - S_TKc

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674

CD Domains:

Go To Gene Page:

36889
4058 hypothetical protein

4058 - hypothetical protein

GO Terms:

GO:0000074, GO:0005634

CD Domains:

Go To Gene Page:

4058
42123 PTZ00295

42123 - PTZ00295

GO Terms:

GO:0008152, GO:0005529, GO:0005975, GO:0004360

CD Domains:

Go To Gene Page:

42123
8952 PTZ00295

8952 - PTZ00295

GO Terms:

GO:0008152, GO:0005529, GO:0005975, GO:0004360

CD Domains:

Go To Gene Page:

8952
9152 PTZ00295

9152 - PTZ00295

GO Terms:

NA

CD Domains:

Go To Gene Page:

9152
GO ID Go Term p-value q-value Cluster
GO:0000074 regulation of cell cycle 0.000000456 0.00126018 Thaps_bicluster_0167
GO:0005975 carbohydrate metabolism 0.0011528 1 Thaps_bicluster_0167
GO:0006030 chitin metabolism 0.059173 1 Thaps_bicluster_0167
GO:0008152 metabolism 0.107438 1 Thaps_bicluster_0167
GO:0006468 protein amino acid phosphorylation 0.468128 1 Thaps_bicluster_0167
GO:0006355 regulation of transcription, DNA-dependent 0.6012 1 Thaps_bicluster_0167
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