Thaps_bicluster_0181 Residual: 0.40
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0181 0.40 Thalassiosira pseudonana
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Displaying 1 - 26 of 26
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10077 SKP1

10077 - SKP1

GO Terms:

NA

CD Domains:

Go To Gene Page:

10077
10457 Alpha_kinase

10457 - Alpha_kinase

GO Terms:

GO:0004674, GO:0005524, GO:0006468

CD Domains:

Go To Gene Page:

10457
10677 hypothetical protein

10677 - hypothetical protein

GO Terms:

GO:0016491

CD Domains:

Go To Gene Page:

10677
1376 DUF3119 superfamily

1376 - DUF3119 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

1376
15398 FtsZ_type1

15398 - FtsZ_type1

GO Terms:

GO:0005525, GO:0005737, GO:0005198, GO:0005874, GO:0007018, GO:0003924, GO:0043234, GO:0051258

CD Domains:

Go To Gene Page:

15398
1554 Glyco_hydro_81 superfamily

1554 - Glyco_hydro_81 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

1554
1842 hypothetical protein

1842 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1842
21249 hypothetical protein

21249 - hypothetical protein

GO Terms:

GO:0000155, GO:0000160

CD Domains:

Go To Gene Page:

21249
22307 TRAPP

22307 - TRAPP

GO Terms:

NA

CD Domains:

Go To Gene Page:

22307
23960 hypothetical protein

23960 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23960
2557 Cupin_8 superfamily

2557 - Cupin_8 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

2557
2577 hypothetical protein

2577 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2577
262529 pi 4-kinase

262529 - pi 4-kinase

GO Terms:

NA

CD Domains:

Go To Gene Page:

262529
268650 (APB2) PTZ00429

268650 - (APB2) PTZ00429

GO Terms:

NA

CD Domains:

Go To Gene Page:

268650
33919 MPC superfamily

33919 - MPC superfamily

GO Terms:

GO:0005554

CD Domains:

Go To Gene Page:

33919
34498 VTC1

34498 - VTC1

GO Terms:

NA

CD Domains:

Go To Gene Page:

34498
34773 ALG3 superfamily

34773 - ALG3 superfamily

GO Terms:

GO:0000030, GO:0005783, GO:0016021, GO:0004584

CD Domains:

Go To Gene Page:

34773
35985 Dynein_light superfamily

35985 - Dynein_light superfamily

GO Terms:

GO:0003777, GO:0005875, GO:0007017, GO:0008567

CD Domains:

Go To Gene Page:

35985
36837 PTZ00265

36837 - PTZ00265

GO Terms:

GO:0005524, GO:0006810, GO:0016021, GO:0042626, GO:0016887, GO:0000166, GO:0017111, GO:0004298, GO:0004299

CD Domains:

Go To Gene Page:

36837
5573 HP_PGM_like

5573 - HP_PGM_like

GO Terms:

GO:0003824, GO:0008152, GO:0004619, GO:0046537, GO:0046538

CD Domains:

Go To Gene Page:

5573
7249 (ARF5) Ras_like_GTPase superfamily

7249 - (ARF5) Ras_like_GTPase superfamily

GO Terms:

GO:0005525, GO:0007264, GO:0015031, GO:0006886

CD Domains:

Go To Gene Page:

7249
7445 NTP-PPase_RS21-C6_like

7445 - NTP-PPase_RS21-C6_like

GO Terms:

NA

CD Domains:

Go To Gene Page:

7445
7934 hypothetical protein

7934 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7934
9028 hypothetical protein

9028 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9028
9167 hypothetical protein

9167 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9167
9752 hypothetical protein

9752 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9752
GO ID Go Term p-value q-value Cluster
GO:0009058 biosynthesis 0.118319 1 Thaps_bicluster_0181
GO:0006886 intracellular protein transport 0.116287 1 Thaps_bicluster_0181
GO:0008152 metabolism 0.620117 1 Thaps_bicluster_0181
GO:0007018 microtubule-based movement 0.0936478 1 Thaps_bicluster_0181
GO:0007017 microtubule-based process 0.00680831 1 Thaps_bicluster_0181
GO:0006468 protein amino acid phosphorylation 0.39098 1 Thaps_bicluster_0181
GO:0051258 protein polymerization 0.0180619 1 Thaps_bicluster_0181
GO:0015031 protein transport 0.0936478 1 Thaps_bicluster_0181
GO:0007264 small GTPase mediated signal transduction 0.0747343 1 Thaps_bicluster_0181
GO:0006810 transport 0.347574 1 Thaps_bicluster_0181
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