Thaps_bicluster_0242 Residual: 0.38
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0242 0.38 Thalassiosira pseudonana
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Displaying 1 - 31 of 31
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16695 Ist1

16695 - Ist1

GO Terms:

GO:0005554

CD Domains:

Go To Gene Page:

16695
18613 S14_ClpP_2

18613 - S14_ClpP_2

GO Terms:

GO:0006508, GO:0008462

CD Domains:

Go To Gene Page:

18613
21677 hypothetical protein

21677 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21677
21896 hypothetical protein

21896 - hypothetical protein

GO Terms:

GO:0005489, GO:0006118

CD Domains:

Go To Gene Page:

21896
22127 hypothetical protein

22127 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22127
22846 hypothetical protein

22846 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

22846
23973 BT1

23973 - BT1

GO Terms:

GO:0016020

CD Domains:

Go To Gene Page:

23973
24376 TerD_like

24376 - TerD_like

GO Terms:

GO:0006950

CD Domains:

Go To Gene Page:

24376
24511 hypothetical protein

24511 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24511
25019 hypothetical protein

25019 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25019
25157 hypothetical protein

25157 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25157
25386 hypothetical protein

25386 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25386
25523 hypothetical protein

25523 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25523
25750 hypothetical protein

25750 - hypothetical protein

GO Terms:

GO:0004308

CD Domains:

Go To Gene Page:

25750
262743 Choline_transpo

262743 - Choline_transpo

GO Terms:

NA

CD Domains:

Go To Gene Page:

262743
262744 hypothetical protein

262744 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

262744
26470 (GFS1) PLN02725

26470 - (GFS1) PLN02725

GO Terms:

GO:0008152, GO:0016491, GO:0050577

CD Domains:

Go To Gene Page:

26470
264815 GluZincin superfamily

264815 - GluZincin superfamily

GO Terms:

GO:0004222, GO:0006508, GO:0008237, GO:0008270

CD Domains:

Go To Gene Page:

264815
268054 hypothetical protein

268054 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

268054
268160 SPFH_like_u4

268160 - SPFH_like_u4

GO Terms:

NA

CD Domains:

Go To Gene Page:

268160
268453 PRK11183

268453 - PRK11183

GO Terms:

NA

CD Domains:

Go To Gene Page:

268453
269135 Tic22 superfamily

269135 - Tic22 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

269135
269541 M20_Acy1

269541 - M20_Acy1

GO Terms:

GO:0006508, GO:0008237, GO:0004407, GO:0008418, GO:0008759, GO:0009017, GO:0016811, GO:0017159, GO:0018748, GO:0018749, GO:0047419

CD Domains:

Go To Gene Page:

269541
28998 Aldo_ket_red

28998 - Aldo_ket_red

GO Terms:

GO:0016491, GO:0008708, GO:0008726, GO:0016614, GO:0018446, GO:0018447, GO:0018448, GO:0018449, GO:0018450, GO:0042469, GO:0045703

CD Domains:

Go To Gene Page:

28998
31034 cyclophilin superfamily

31034 - cyclophilin superfamily

GO Terms:

GO:0006457, GO:0003755, GO:0004600, GO:0030051, GO:0042027

CD Domains:

Go To Gene Page:

31034
34850 lon

34850 - lon

GO Terms:

GO:0004176, GO:0004252, GO:0006508, GO:0006510, GO:0000166, GO:0017111, GO:0005524, GO:0004289, GO:0008132, GO:0008243, GO:0008991, GO:0016808

CD Domains:

Go To Gene Page:

34850
4026 hypothetical protein

4026 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4026
4270 Scramblase superfamily

4270 - Scramblase superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

4270
5563 hypothetical protein

5563 - hypothetical protein

GO Terms:

GO:0009306, GO:0015450, GO:0016020

CD Domains:

Go To Gene Page:

5563
9003 hypothetical protein

9003 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

9003
GO ID Go Term p-value q-value Cluster
GO:0006510 ATP-dependent proteolysis 0.00227414 1 Thaps_bicluster_0242
GO:0006950 response to stress 0.00227414 1 Thaps_bicluster_0242
GO:0006508 proteolysis and peptidolysis 0.00290882 1 Thaps_bicluster_0242
GO:0009306 protein secretion 0.00906837 1 Thaps_bicluster_0242
GO:0006457 protein folding 0.25918 1 Thaps_bicluster_0242
GO:0006468 protein amino acid phosphorylation 0.39098 1 Thaps_bicluster_0242
GO:0006118 electron transport 0.463588 1 Thaps_bicluster_0242
GO:0008152 metabolism 0.620117 1 Thaps_bicluster_0242
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