Thaps_bicluster_0273 Residual: 0.40
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0273 0.40 Thalassiosira pseudonana
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Displaying 1 - 33 of 33
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10385 COG2128

10385 - COG2128

GO Terms:

NA

CD Domains:

Go To Gene Page:

10385
10552 Beta_propel

10552 - Beta_propel

GO Terms:

NA

CD Domains:

Go To Gene Page:

10552
10997 hypothetical protein

10997 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10997
12594 hypothetical protein

12594 - hypothetical protein

GO Terms:

GO:0008061

CD Domains:

Go To Gene Page:

12594
21216 hypothetical protein

21216 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21216
21559 hypothetical protein

21559 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21559
21795 SCP superfamily

21795 - SCP superfamily

GO Terms:

GO:0005576

CD Domains:

Go To Gene Page:

21795
23510 hypothetical protein

23510 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23510
23624 SCP superfamily

23624 - SCP superfamily

GO Terms:

GO:0005576

CD Domains:

Go To Gene Page:

23624
23861 hypothetical protein

23861 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

23861
23932 hypothetical protein

23932 - hypothetical protein

GO Terms:

GO:0031177, GO:0004308

CD Domains:

Go To Gene Page:

23932
24039 hypothetical protein

24039 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24039
24230 hypothetical protein

24230 - hypothetical protein

GO Terms:

GO:0006520, GO:0016491, GO:0005489, GO:0006118

CD Domains:

Go To Gene Page:

24230
24441 hypothetical protein

24441 - hypothetical protein

GO Terms:

GO:0004222, GO:0006508, GO:0008237, GO:0008270

CD Domains:

Go To Gene Page:

24441
24858 hypothetical protein

24858 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

24858
25205 Beta_propel

25205 - Beta_propel

GO Terms:

NA

CD Domains:

Go To Gene Page:

25205
25280 hypothetical protein

25280 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25280
25357 hypothetical protein

25357 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25357
25381 hypothetical protein

25381 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25381
25904 hypothetical protein

25904 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25904
26041 hypothetical protein

26041 - hypothetical protein

GO Terms:

GO:0008061

CD Domains:

Go To Gene Page:

26041
261965 (Tp_HSF_3.4c) HSF_DNA-bind superfamily

261965 - (Tp_HSF_3.4c) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

261965
262659 Tryp_SPc

262659 - Tryp_SPc

GO Terms:

GO:0004295, GO:0006508, GO:0004263, GO:0030019

CD Domains:

Go To Gene Page:

262659
263121 Peptidase_M8 superfamily

263121 - Peptidase_M8 superfamily

GO Terms:

GO:0006508, GO:0008237, GO:0008270

CD Domains:

Go To Gene Page:

263121
264631 hypothetical protein

264631 - hypothetical protein

GO Terms:

GO:0000074

CD Domains:

Go To Gene Page:

264631
268410 (CDK1) STKc_CDK_like

268410 - (CDK1) STKc_CDK_like

GO Terms:

GO:0004672, GO:0005524, GO:0006468, GO:0004713, GO:0004674, GO:0004682, GO:0004691, GO:0005952, GO:0005956, GO:0008603, GO:0008605

CD Domains:

Go To Gene Page:

268410
28825 Chitin_synth_C

28825 - Chitin_synth_C

GO Terms:

GO:0016758, GO:0004100

CD Domains:

Go To Gene Page:

28825
42258 WD40 superfamily

42258 - WD40 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

42258
4616 hypothetical protein

4616 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4616
5110 hypothetical protein

5110 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5110
5989 FIG superfamily

5989 - FIG superfamily

GO Terms:

GO:0004437, GO:0008441

CD Domains:

Go To Gene Page:

5989
8365 hypothetical protein

8365 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8365
8849 U-box superfamily

8849 - U-box superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

8849
GO ID Go Term p-value q-value Cluster
GO:0006520 amino acid metabolism 0.0426158 1 Thaps_bicluster_0273
GO:0006118 electron transport 0.432304 1 Thaps_bicluster_0273
GO:0006468 protein amino acid phosphorylation 0.362866 1 Thaps_bicluster_0273
GO:0006412 protein biosynthesis 0.294992 1 Thaps_bicluster_0273
GO:0006508 proteolysis and peptidolysis 0.0183286 1 Thaps_bicluster_0273
GO:0000074 regulation of cell cycle 0.117447 1 Thaps_bicluster_0273
GO:0006355 regulation of transcription, DNA-dependent 0.481263 1 Thaps_bicluster_0273
GO:0006413 translational initiation 0.0485684 1 Thaps_bicluster_0273
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