PHATRDRAFT_42832 manganese superoxide dismutase (SodA)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_42832	chr_1	manganese superoxide dismutase (SodA)	1268775	1269523	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0132

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0249	0.32	29000 800000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Sod_Fe_C superfamily		Iron/manganese superoxide dismutases, C-terminal domain; superoxide dismutases (SODs) catalyse the...	-	163.231	4.87E-51	122 - 222	superfamily	251524
Sod_Fe_C superfamily		Iron/manganese superoxide dismutases, C-terminal domain; superoxide dismutases (SODs) catalyse the...	-	163.231	4.87E-51	122 - 222	superfamily	251524
Sod_Fe_N superfamily		Iron/manganese superoxide dismutases, alpha-hairpin domain; superoxide dismutases (SODs) catalyse...	-	124.706	2.37E-36	43 - 120	superfamily	249570
Sod_Fe_N superfamily		Iron/manganese superoxide dismutases, alpha-hairpin domain; superoxide dismutases (SODs) catalyse...	-	124.706	2.37E-36	43 - 120	superfamily	249570
SodA		Superoxide dismutase [Inorganic ion transport and metabolism]	-	247.565	1.39E-82	42 - 226	multi-dom	223678

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
40713		Not available	203256	300378	Not available	Cre13.g605150.t1.2	AT3G10920.1	539206

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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