20923 DUF1279 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20923	chr_1	DUF1279 superfamily	2030312	2031340	+	DUF1279 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443168	Thaps20923.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0020

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0125	0.41	0.0014 0.0015

Most Highly Correlated Transcripts

37934 GRX_PICOT_like 0.9428	30701 PRK05279 0.9151	9115 DnaJ 0.9146	28025 rSAM_SeCys 0.9136	31751 PKCI_related 0.9064	20978 hypothetical protein 0.9053
261400 NA 0.9048	10898 hypothetical protein 0.9043	1773 hypothetical protein 0.9036	7936 ATP-synt_10 superfamily 0.9021

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF1279 superfamily		Protein of unknown function (DUF1279); This family represents the C-terminus (approx. 120 residues...	-	72.3029	8.43E-17	106 - 186	superfamily	191640

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_6606	PHATRDRAFT_6606	166361	319334	357487	Cre12.g485850.t1.2	AT2G27290.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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