coercing to Unicode: need string or buffer, NoneType found
Request Method: | GET |
---|---|
Request URL: | https://networks.systemsbiology.net/gsu/gene/GSU0598 |
Django Version: | 1.8.3 |
Exception Type: | TypeError |
Exception Value: | coercing to Unicode: need string or buffer, NoneType found |
Exception Location: | /local/apache-stuff/network_portal/web_app/networks/templatetags/filters.py in influences_to_gene_description_map, line 182 |
Python Executable: | /usr/bin/python |
Python Version: | 2.7.5 |
Python Path: | ['/local/apache-stuff/network_portal/web_app', '/usr/lib64/python27.zip', '/usr/lib64/python2.7', '/usr/lib64/python2.7/plat-linux2', '/usr/lib64/python2.7/lib-tk', '/usr/lib64/python2.7/lib-old', '/usr/lib64/python2.7/lib-dynload', '/usr/lib64/python2.7/site-packages', '/usr/lib64/python2.7/site-packages/gtk-2.0', '/usr/lib/python2.7/site-packages'] |
Server time: | Tue, 19 Mar 2024 05:10:36 -0700 |
In template /local/apache-stuff/network_portal/web_app/networks/templates/gene_regulation_snippet.html
, error at line 9
1 | {% load filters %} |
---|---|
2 | {% load format_tags %} |
3 | <a class="help" href="#regulation"><img align="right" src="/static/images/help.png" /></a> |
4 | <h5> Regulation information for {{ gene }} </h5> <span class="search_help">(Mouseover regulator name to see its description)</span> |
5 | <p> |
6 | <div class="tab-contents"> |
7 | <script type="text/javascript"> |
8 | $(document).ready(function() { |
9 | {{ influence_biclusters|influences_to_gene_description_map }} ; |
10 | $('.reggene').on('mouseover', function(event) { |
11 | var geneName = $(this).html(); |
12 | $(this).qtip({ |
13 | prerender: true, |
14 | content: descriptionMap[geneName] |
15 | }, event); |
16 | }); |
17 | }); |
18 | </script> |
19 |
/usr/lib/python2.7/site-packages/django/core/handlers/base.py
in get_response
response = middleware_method(request, callback, callback_args, callback_kwargs)
if response:
break
if response is None:
wrapped_callback = self.make_view_atomic(callback)
try:
response = wrapped_callback(request, *callback_args, **callback_kwargs)...
except Exception as e:
# If the view raised an exception, run it through exception
# middleware, and if the exception middleware returns a
# response, use that. Otherwise, reraise the exception.
for middleware_method in self._exception_middleware:
response = middleware_method(request, e)
Variable | Value |
---|---|
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
callback_args | () |
resolver_match | ResolverMatch(func=networks.views.gene, args=(), kwargs={'gene': u'GSU0598', 'species': u'gsu'}, url_name=gene, app_name=None, namespaces=[]) |
middleware_method | <bound method CsrfViewMiddleware.process_view of <django.middleware.csrf.CsrfViewMiddleware object at 0x7f128c42c610>> |
self | <django.core.handlers.wsgi.WSGIHandler object at 0x7f12d81c9f10> |
request | "<WSGIRequest\npath:/gsu/gene/GSU0598,\nGET:<QueryDict: {}>,\nPOST:<QueryDict: {}>,\nCOOKIES:{},\nMETA:{'CONTEXT_DOCUMENT_ROOT': '/local/apache-stuff/network_portal',\n 'CONTEXT_PREFIX': '',\n u'CSRF_COOKIE': u'JI4ypAtatEBoiwnIBW1emKmVY6mEsqFG',\n 'DOCUMENT_ROOT': '/local/apache-stuff/network_portal',\n 'GATEWAY_INTERFACE': 'CGI/1.1',\n 'HTTP_ACCEPT': '*/*',\n 'HTTP_CONNECTION': 'close',\n 'HTTP_HOST': 'networks.systemsbiology.net',\n 'HTTP_REFERER': 'http://networks.systemsbiology.net/gsu/gene/GSU0598',\n 'HTTP_USER_AGENT': 'claudebot',\n 'HTTP_X_FORWARDED_FOR': '34.230.84.106',\n 'HTTP_X_FORWARDED_PROTO': 'https',\n 'HTTP_X_REAL_IP': '34.230.84.106',\n 'PATH_INFO': u'/gsu/gene/GSU0598',\n 'PATH_TRANSLATED': '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py/gsu/gene/GSU0598',\n 'QUERY_STRING': '',\n 'REMOTE_ADDR': '10.3.0.181',\n 'REMOTE_PORT': '50656',\n 'REQUEST_METHOD': 'GET',\n 'REQUEST_SCHEME': 'https',\n 'REQUEST_URI': '/gsu/gene/GSU0598',\n 'SCRIPT_FILENAME': '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py',\n 'SCRIPT_NAME': u'',\n 'SERVER_ADDR': '10.2.8.50',\n 'SERVER_ADMIN': 'root@localhost',\n 'SERVER_NAME': 'networks.systemsbiology.net',\n 'SERVER_PORT': '443',\n 'SERVER_PROTOCOL': 'HTTP/1.1',\n 'SERVER_SIGNATURE': '',\n 'SERVER_SOFTWARE': 'Apache',\n 'UNIQUE_ID': 'ZfmAt@nWa@cPlUfxZ1wAygAAAAs',\n 'mod_wsgi.application_group': '',\n 'mod_wsgi.callable_object': 'application',\n 'mod_wsgi.enable_sendfile': '0',\n 'mod_wsgi.handler_script': '',\n 'mod_wsgi.input_chunked': '0',\n 'mod_wsgi.listener_host': '',\n 'mod_wsgi.listener_port': '443',\n 'mod_wsgi.process_group': 'networks-ssl',\n 'mod_wsgi.queue_start': '1710850231986591',\n 'mod_wsgi.request_handler': 'wsgi-script',\n 'mod_wsgi.script_reloading': '1',\n 'mod_wsgi.version': (3, 4),\n 'wsgi.errors': <mod_wsgi.Log object at 0x7f126f03d970>,\n 'wsgi.file_wrapper': <built-in method file_wrapper of mod_wsgi.Adapter object at 0x7f127f2baa08>,\n 'wsgi.input': <mod_wsgi.Input object at 0x7f126f03d1f0>,\n 'wsgi.multiprocess': True,\n 'wsgi.multithread': True,\n 'wsgi.run_once': False,\n 'wsgi.url_scheme': 'https',\n 'wsgi.version': (1, 0)}>" |
callback | <function gene at 0x7f128c354c80> |
wrapped_callback | <function gene at 0x7f128c354c80> |
resolver | <RegexURLResolver 'nwportal.urls' (None:None) ^/> |
callback_kwargs | {'gene': u'GSU0598', 'species': u'gsu'} |
response | None |
urlconf | 'nwportal.urls' |
/local/apache-stuff/network_portal/web_app/networks/views.py
in gene
bicluster_pssms[motif_id] = pssm
if not preview_added:
preview_motifs.append(motif_id)
preview_added = True
motifs = all_motifs # used in template
preview_motifs = preview_motifs[:2] # restrict to 2 motifs on the front tab to improve load time
return render_to_response('gene.html', locals())...
# WW: these go into an embedded frame, so for security reasons make sure these are hosted
# on the same domain
SVG_MAP = {
'dvu': "/static/cmonkey_enigma/cmonkey_4.8.2_dvu_3491x739_11_Mar_02_17:37:51/svgs/",
'mmp': "/static/cmonkey_enigma/mmp/cmonkey_4.8.8_mmp_1661x58_11_Oct_11_16:14:07/svgs/",
Variable | Value |
---|---|
all_motifs | [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>] |
influence_biclusters | [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)] |
count_regulated_biclusters | 23L |
motif_id | 2699 |
species | <Species: Geobacter sulfurreducens> |
pssms | {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]} |
functions | [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>] |
network | <Network: Geobacter_sulfurreducens network> |
system | {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'} |
preview_motifs | [2292, 2698] |
systems | [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}] |
motifs | [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>] |
neighbor_genes | [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gene: GSU0757>, <Gene: GSU1030>, <Gene: GSU1038>, <Gene: GSU1039>, <Gene: GSU1060>, <Gene: GSU1182>, <Gene: GSU1186>, <Gene: GSU1251>, <Gene: GSU1252>, <Gene: GSU1253>, <Gene: GSU1616>, <Gene: GSU1677>, <Gene: GSU1853>, <Gene: GSU1854>, <Gene: GSU1855>, <Gene: GSU2097>, <Gene: GSU2131>, <Gene: GSU2203>, <Gene: GSU2310>, <Gene: GSU2384>, <Gene: GSU2438>, <Gene: GSU2439>, <Gene: GSU2499>, <Gene: GSU2501>, <Gene: GSU2503>, <Gene: GSU2505>, <Gene: GSU2622>, <Gene: GSU2640>, <Gene: GSU2641>, <Gene: GSU2735>, <Gene: GSU2741>, <Gene: GSU2746>, <Gene: GSU2763>, <Gene: GSU2777>, <Gene: GSU2789>, <Gene: GSU2880>, <Gene: GSU2895>, <Gene: GSU3169>, <Gene: GSU3313>, <Gene: GSU3420>] |
function | <Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog> |
member_biclusters | [<Bicluster: Bicluster 66>, <Bicluster: Bicluster 269>] |
STATIC_PREFIX | '/static/' |
key | u'cog' |
bicluster_pssms | {2292: [[0.0, 1.0, 0.0, 0.0], [0.75, 0.0, 0.0, 0.25], [0.25, 0.25, 0.0, 0.5], [0.25, 0.0, 0.75, 0.0], [0.25, 0.0, 0.0, 0.75], [0.25, 0.0, 0.75, 0.0], [0.25, 0.0, 0.75, 0.0], [0.0, 0.75, 0.0, 0.25], [0.0, 0.0, 1.0, 0.0], [0.5, 0.25, 0.0, 0.25], [0.75, 0.0, 0.0, 0.25], [0.25, 0.0, 0.75, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.75, 0.0, 0.25, 0.0], [0.25, 0.5, 0.25, 0.0], [0.25, 0.0, 0.5, 0.25], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.5, 0.25, 0.0, 0.25], [0.0, 0.0, 0.0, 1.0], [0.5, 0.0, 0.0, 0.5], [0.0, 0.0, 0.0, 1.0]], 2293: [[0.125, 0.75, 0.125, 0.0], [0.0, 0.0, 0.125, 0.875], [0.0, 0.0, 0.0, 1.0], [0.125, 0.0, 0.375, 0.5], [0.125, 0.625, 0.0, 0.25], [0.25, 0.375, 0.125, 0.25], [1.0, 0.0, 0.0, 0.0], [0.125, 0.0, 0.0, 0.875], [0.0, 0.0, 0.0, 1.0], [0.375, 0.0, 0.0, 0.625], [0.0, 0.0, 0.125, 0.875], [0.125, 0.0, 0.25, 0.625], [0.25, 0.0, 0.75, 0.0], [0.0, 0.0, 0.875, 0.125], [0.0, 0.0, 0.0, 1.0]], 2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]} |
pssm | [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]] |
network_id | 6 |
regulated_biclusters | [<Bicluster: Bicluster 9>, <Bicluster: Bicluster 33>, <Bicluster: Bicluster 48>, <Bicluster: Bicluster 78>, <Bicluster: Bicluster 88>, <Bicluster: Bicluster 90>, <Bicluster: Bicluster 91>, <Bicluster: Bicluster 94>, <Bicluster: Bicluster 105>, <Bicluster: Bicluster 120>, <Bicluster: Bicluster 124>, <Bicluster: Bicluster 142>, <Bicluster: Bicluster 151>, <Bicluster: Bicluster 153>, <Bicluster: Bicluster 164>, <Bicluster: Bicluster 171>, <Bicluster: Bicluster 179>, <Bicluster: Bicluster 247>, <Bicluster: Bicluster 250>, <Bicluster: Bicluster 268>, <Bicluster: Bicluster 324>, <Bicluster: Bicluster 337>, <Bicluster: Bicluster 341>] |
request | "<WSGIRequest\npath:/gsu/gene/GSU0598,\nGET:<QueryDict: {}>,\nPOST:<QueryDict: {}>,\nCOOKIES:{},\nMETA:{'CONTEXT_DOCUMENT_ROOT': '/local/apache-stuff/network_portal',\n 'CONTEXT_PREFIX': '',\n u'CSRF_COOKIE': u'JI4ypAtatEBoiwnIBW1emKmVY6mEsqFG',\n 'DOCUMENT_ROOT': '/local/apache-stuff/network_portal',\n 'GATEWAY_INTERFACE': 'CGI/1.1',\n 'HTTP_ACCEPT': '*/*',\n 'HTTP_CONNECTION': 'close',\n 'HTTP_HOST': 'networks.systemsbiology.net',\n 'HTTP_REFERER': 'http://networks.systemsbiology.net/gsu/gene/GSU0598',\n 'HTTP_USER_AGENT': 'claudebot',\n 'HTTP_X_FORWARDED_FOR': '34.230.84.106',\n 'HTTP_X_FORWARDED_PROTO': 'https',\n 'HTTP_X_REAL_IP': '34.230.84.106',\n 'PATH_INFO': u'/gsu/gene/GSU0598',\n 'PATH_TRANSLATED': '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py/gsu/gene/GSU0598',\n 'QUERY_STRING': '',\n 'REMOTE_ADDR': '10.3.0.181',\n 'REMOTE_PORT': '50656',\n 'REQUEST_METHOD': 'GET',\n 'REQUEST_SCHEME': 'https',\n 'REQUEST_URI': '/gsu/gene/GSU0598',\n 'SCRIPT_FILENAME': '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py',\n 'SCRIPT_NAME': u'',\n 'SERVER_ADDR': '10.2.8.50',\n 'SERVER_ADMIN': 'root@localhost',\n 'SERVER_NAME': 'networks.systemsbiology.net',\n 'SERVER_PORT': '443',\n 'SERVER_PROTOCOL': 'HTTP/1.1',\n 'SERVER_SIGNATURE': '',\n 'SERVER_SOFTWARE': 'Apache',\n 'UNIQUE_ID': 'ZfmAt@nWa@cPlUfxZ1wAygAAAAs',\n 'mod_wsgi.application_group': '',\n 'mod_wsgi.callable_object': 'application',\n 'mod_wsgi.enable_sendfile': '0',\n 'mod_wsgi.handler_script': '',\n 'mod_wsgi.input_chunked': '0',\n 'mod_wsgi.listener_host': '',\n 'mod_wsgi.listener_port': '443',\n 'mod_wsgi.process_group': 'networks-ssl',\n 'mod_wsgi.queue_start': '1710850231986591',\n 'mod_wsgi.request_handler': 'wsgi-script',\n 'mod_wsgi.script_reloading': '1',\n 'mod_wsgi.version': (3, 4),\n 'wsgi.errors': <mod_wsgi.Log object at 0x7f126f03d970>,\n 'wsgi.file_wrapper': <built-in method file_wrapper of mod_wsgi.Adapter object at 0x7f127f2baa08>,\n 'wsgi.input': <mod_wsgi.Input object at 0x7f126f03d1f0>,\n 'wsgi.multiprocess': True,\n 'wsgi.multithread': True,\n 'wsgi.run_once': False,\n 'wsgi.url_scheme': 'https',\n 'wsgi.version': (1, 0)}>" |
mbicl | <Bicluster: Bicluster 269> |
gene | <Gene: GSU0598> |
preview_added | True |
view | '' |
/usr/lib/python2.7/site-packages/django/shortcuts.py
in render_to_response
Returns a HttpResponse whose content is filled with the result of calling
django.template.loader.render_to_string() with the passed arguments.
"""
if (context_instance is _context_instance_undefined
and dirs is _dirs_undefined
and dictionary is _dictionary_undefined):
# No deprecated arguments were passed - use the new code path
content = loader.render_to_string(template_name, context, using=using)...
else:
# Some deprecated arguments were passed - use the legacy code path
content = loader.render_to_string(
template_name, context, context_instance, dirs, dictionary,
using=using)
Variable | Value |
---|---|
dirs | <object object at 0x7f12d82db690> |
status | None |
content_type | None |
dictionary | <object object at 0x7f12d82db680> |
template_name | 'gene.html' |
context_instance | <object object at 0x7f12d82db670> |
context | {u'STATIC_PREFIX': '/static/', 'all_motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'bicluster_pssms': {2292: [[0.0, 1.0, 0.0, 0.0], [0.75, 0.0, 0.0, 0.25], [0.25, 0.25, 0.0, 0.5], [0.25, 0.0, 0.75, 0.0], [0.25, 0.0, 0.0, 0.75], [0.25, 0.0, 0.75, 0.0], [0.25, 0.0, 0.75, 0.0], [0.0, 0.75, 0.0, 0.25], [0.0, 0.0, 1.0, 0.0], [0.5, 0.25, 0.0, 0.25], [0.75, 0.0, 0.0, 0.25], [0.25, 0.0, 0.75, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.75, 0.0, 0.25, 0.0], [0.25, 0.5, 0.25, 0.0], [0.25, 0.0, 0.5, 0.25], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.5, 0.25, 0.0, 0.25], [0.0, 0.0, 0.0, 1.0], [0.5, 0.0, 0.0, 0.5], [0.0, 0.0, 0.0, 1.0]], 2293: [[0.125, 0.75, 0.125, 0.0], [0.0, 0.0, 0.125, 0.875], [0.0, 0.0, 0.0, 1.0], [0.125, 0.0, 0.375, 0.5], [0.125, 0.625, 0.0, 0.25], [0.25, 0.375, 0.125, 0.25], [1.0, 0.0, 0.0, 0.0], [0.125, 0.0, 0.0, 0.875], [0.0, 0.0, 0.0, 1.0], [0.375, 0.0, 0.0, 0.625], [0.0, 0.0, 0.125, 0.875], [0.125, 0.0, 0.25, 0.625], [0.25, 0.0, 0.75, 0.0], [0.0, 0.0, 0.875, 0.125], [0.0, 0.0, 0.0, 1.0]], 2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], ... <trimmed 14115 bytes string> |
using | None |
/usr/lib/python2.7/site-packages/django/template/loader.py
in render_to_string
and dirs is _dirs_undefined
and dictionary is _dictionary_undefined):
# No deprecated arguments were passed - use the new code path
if isinstance(template_name, (list, tuple)):
template = select_template(template_name, using=using)
else:
template = get_template(template_name, using=using)
return template.render(context, request)...
else:
# Some deprecated arguments were passed - use the legacy code path
for engine in _engine_list(using):
try:
# This is required for deprecating properly arguments specific
Variable | Value |
---|---|
dirs | <object object at 0x7f12d82db690> |
template | <django.template.backends.django.Template object at 0x7f126eb63fd0> |
dictionary | <object object at 0x7f12d82db680> |
template_name | 'gene.html' |
request | None |
context_instance | <object object at 0x7f12d82db670> |
context | {u'STATIC_PREFIX': '/static/', 'all_motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'bicluster_pssms': {2292: [[0.0, 1.0, 0.0, 0.0], [0.75, 0.0, 0.0, 0.25], [0.25, 0.25, 0.0, 0.5], [0.25, 0.0, 0.75, 0.0], [0.25, 0.0, 0.0, 0.75], [0.25, 0.0, 0.75, 0.0], [0.25, 0.0, 0.75, 0.0], [0.0, 0.75, 0.0, 0.25], [0.0, 0.0, 1.0, 0.0], [0.5, 0.25, 0.0, 0.25], [0.75, 0.0, 0.0, 0.25], [0.25, 0.0, 0.75, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.75, 0.0, 0.25, 0.0], [0.25, 0.5, 0.25, 0.0], [0.25, 0.0, 0.5, 0.25], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.5, 0.25, 0.0, 0.25], [0.0, 0.0, 0.0, 1.0], [0.5, 0.0, 0.0, 0.5], [0.0, 0.0, 0.0, 1.0]], 2293: [[0.125, 0.75, 0.125, 0.0], [0.0, 0.0, 0.125, 0.875], [0.0, 0.0, 0.0, 1.0], [0.125, 0.0, 0.375, 0.5], [0.125, 0.625, 0.0, 0.25], [0.25, 0.375, 0.125, 0.25], [1.0, 0.0, 0.0, 0.0], [0.125, 0.0, 0.0, 0.875], [0.0, 0.0, 0.0, 1.0], [0.375, 0.0, 0.0, 0.625], [0.0, 0.0, 0.125, 0.875], [0.125, 0.0, 0.25, 0.625], [0.25, 0.0, 0.75, 0.0], [0.0, 0.0, 0.875, 0.125], [0.0, 0.0, 0.0, 1.0]], 2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], ... <trimmed 14115 bytes string> |
using | None |
/usr/lib/python2.7/site-packages/django/template/backends/django.py
in render
warnings.warn(
"render() must be called with a dict, not a Context.",
RemovedInDjango110Warning, stacklevel=2)
else:
context = make_context(context, request)
return self.template.render(context)...
Variable | Value |
---|---|
self | <django.template.backends.django.Template object at 0x7f126eb63fd0> |
request | None |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
def render(self, context):
"Display stage -- can be called many times"
context.render_context.push()
try:
if context.template is None:
with context.bind_template(self):
return self._render(context)...
else:
return self._render(context)
finally:
context.render_context.pop()
Variable | Value |
---|---|
self | <django.template.base.Template object at 0x7f126eb63d50> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in _render
def __iter__(self):
for node in self.nodelist:
for subnode in node:
yield subnode
def _render(self, context):
return self.nodelist.render(context)...
def render(self, context):
"Display stage -- can be called many times"
context.render_context.push()
try:
if context.template is None:
Variable | Value |
---|---|
self | <django.template.base.Template object at 0x7f126eb63d50> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
# extend_nodelist().
contains_nontext = False
def render(self, context):
bits = []
for node in self:
if isinstance(node, Node):
bit = self.render_node(node, context)...
else:
bit = node
bits.append(force_text(bit))
return mark_safe(''.join(bits))
def get_nodes_by_type(self, nodetype):
Variable | Value |
---|---|
node | <ExtendsNode: extends "base2.html"> |
self | [<ExtendsNode: extends "base2.html">] |
bits | [] |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
/usr/lib/python2.7/site-packages/django/template/debug.py
in render_node
if not hasattr(e, 'django_template_source'):
e.django_template_source = token.source
class DebugNodeList(NodeList):
def render_node(self, node, context):
try:
return node.render(context)...
except Exception as e:
if not hasattr(e, 'django_template_source'):
e.django_template_source = node.source
raise
Variable | Value |
---|---|
node | <ExtendsNode: extends "base2.html"> |
self | [<ExtendsNode: extends "base2.html">] |
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
/usr/lib/python2.7/site-packages/django/template/loader_tags.py
in render
blocks = {n.name: n for n in
compiled_parent.nodelist.get_nodes_by_type(BlockNode)}
block_context.add_blocks(blocks)
break
# Call Template._render explicitly so the parser context stays
# the same.
return compiled_parent._render(context)...
class IncludeNode(Node):
def __init__(self, template, *args, **kwargs):
self.template = template
self.extra_context = kwargs.pop('extra_context', {})
Variable | Value |
---|---|
node | <django.template.defaulttags.LoadNode object at 0x7f127e3a2190> |
blocks | {u'basewrap': <Block Node: basewrap. Contents: [<Text Node: '<div id="wrap-no-line">'>]>, u'content': <Block Node: content. Contents: []>, u'csscommon': <Block Node: csscommon. Contents: [<Text Node: ' <link rel="styleshee'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/portal-style.'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/jquery.reject'>]>, u'cssreset': <Block Node: cssreset. Contents: []>, u'cssspecial': <Block Node: cssspecial. Contents: []>, u'footer': <Block Node: footer. Contents: [<Text Node: ' <!--<a href="ht'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/kbase-logo.jpg"></'>, <django.template.defaulttags.URLNode object at 0x7f127e3a0b10>, <Text Node: '">Development</a> '>, <django.template.defaulttags.URLNode object at 0x7f127e3a0e10>, <Text Node: '">Home</a></p> '>]>, u'jscommon': <Block Node: jscommon. Contents: [<Text Node: ' <!--<script type="te'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'cytoscapeweb/js/json2.min'>]>, u'jsspecial': <Block Node: jsspecial. Contents: []>, u'title': <Block Node: title. Contents: [<Text Node: 'Network Portal'>]>} |
block_context | <django.template.loader_tags.BlockContext object at 0x7f127e389d10> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
compiled_parent | <django.template.base.Template object at 0x7f127e389c10> |
self | <ExtendsNode: extends "base2.html"> |
/usr/lib/python2.7/site-packages/django/template/base.py
in _render
def __iter__(self):
for node in self.nodelist:
for subnode in node:
yield subnode
def _render(self, context):
return self.nodelist.render(context)...
def render(self, context):
"Display stage -- can be called many times"
context.render_context.push()
try:
if context.template is None:
Variable | Value |
---|---|
self | <django.template.base.Template object at 0x7f127e389c10> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
# extend_nodelist().
contains_nontext = False
def render(self, context):
bits = []
for node in self:
if isinstance(node, Node):
bit = self.render_node(node, context)...
else:
bit = node
bits.append(force_text(bit))
return mark_safe(''.join(bits))
def get_nodes_by_type(self, nodetype):
Variable | Value |
---|---|
node | <Block Node: content. Contents: []> |
bit | u'\n <div id="content">\n ' |
bits | [u'', u'', u'<!doctype html>\n<html>\n <head>\n <title>', u'Network Portal - Gene GSU0598', u'</title>\n ', u'\n<link rel="stylesheet" type="text/css" href="http://www.ncbi.nlm.nih.gov/core/extjs/ext-3.4.0/resources/css/ext-all.css" />\n<link rel="stylesheet" type="text/css" href="http://www.ncbi.nlm.nih.gov/core/extjs/ext-3.4.0/resources/css/xtheme-gray.css" id="theme" />\n<link rel="stylesheet" type="text/css" href="http://www.ncbi.nlm.nih.gov/coreweb/styles/ncbi_templates.css" />\n<!-- <link rel="stylesheet" type="text/css" href="http://www.ncbi.nlm.nih.gov/projects/sviewer/css/style.css" /> -->\n<link rel="stylesheet" href="http://code.jquery.com/ui/1.9.2/themes/redmond/jquery-ui.css" />\n', u'\n ', u'\n <link rel="stylesheet" href="/static/stylesheets/portal-style.css">\n <link rel="stylesheet" href="/static/stylesheets/jquery.reject.css">', u'\n <link href="', u'/static/', u'javascripts/jquery.qtip.min.css" rel="stylesheet" type="text/css" />\n ', u'<link href="http://cdn.wijmo.com/jquery.wijmo-open.1.5.0.css" rel="stylesheet" type="text/css" />\n<link rel="stylesheet" href="/static/stylesheets/colorbox.css" />\n<link href="/static/javascripts/jquery.qtip.min.css" rel="stylesheet" type="text/css" />', u'\n ', u'\n <!--<script type="text/javascript" src="http://code.jquery.com/jquery-latest.js"></script> -->\n <script src="http://ajax.googleapis.com/ajax/libs/jquery/1.10.2/jquery.js"></script>\n\n <script src="/static/javascripts/jquery-ui-1.11.2.custom/jquery-ui.min.js"></script>\n <link rel="stylesheet" href="/static/javascripts/jquery-ui-1.11.2.custom/jquery-ui.min.css">\n <script type="text/javascript" src="/static/cytoscapeweb/js/json2.min.js"></script>\n ', u'\n ', u'<script type="text/javascript" src="/static/cytoscapeweb/js/AC_OETags.min.js"></script>\n <script type="text/javascript" src="/static/cytoscapeweb/js/cytoscapeweb.min.js"></script>\n <script type="text/javascript" src="/static/javascripts/wwu_logo/isblogo.js"></script>\n <script type="text/javascript" src="/static/javascripts/network_helpers.js"></script>\n <script type="text/javascript" src="/static/javascripts/jquery.qtip.min.js"></script>\n <script type="text/javascript" src="http://cdn.wijmo.com/jquery.wijmo-open.1.5.0.min.js"></script>\n <script type="text/javascript" src="/static/javascripts/protovis.min.js"></script>\n <script type="text/javascript" src="/static/javascripts/visquick-min/vq.min.js"></script>\n <script type="text/javascript" src="/static/javascripts/visquick-min/vq.circvis.min.js"></script>\n <script type="text/javascript" src="/static/javascripts/visquick_helpers.js"></script>\n <script type=\'text/javascript\' src=\'/static/javascripts/jquery.colorbox.js\'></script>\n<!-- <script type="text/javascript" src="http://www.ncbi.nlm.nih.gov/core/extjs/ext-3.4.0/adapter/ext/ext-base.js"></script>\n <script type="text/javascript" src="http://www.ncbi.nlm.nih.gov/core/extjs/ext-3.4.0/ext-all.js"></script>\n <script type="text/javascript">window.sv_base_url = "/sviewer/"</script>-->\n<!-- These are required for loading NCBI sequence viewer in gene page -->\n<!--<script type="text/javascript" src="http://www.ncbi.nlm.nih.gov/projects/sviewer/js/main.js"/>-->\n ', u'\n <script type="text/javascript" src="', u'/static/', u'javascripts/main.js"></script>\n <script type="text/javascript" src="', u'/static/', u'javascripts/collapsing_divs.js"></script>\n <script type="text/javascript" src="', u'/static/', u'javascripts/jquery.tablesorter.min.js"></script>\n <script type="text/javascript" src="', u'/static/', u'javascripts/jquery.tablesorter.pager.js"></script>\n\t<script type="text/javascript" src="', u'/static/', u'javascripts/jquery.jcarousel.min.js"></script>\n <script type="text/javascript" src="', u'/static/', u'javascripts/jquery.qtip.min.js"></script>\n <script type="text/javascript" src="', u'/static/', u'javascripts/jquery.reject.min.js"></script>\n <!-- google analytics -->\n <script ty... <trimmed 7458 bytes string> |
self | [<django.template.defaulttags.LoadNode object at 0x7f127e3a2190>, <PrefixNode for 'STATIC_URL'>, <Text Node: '<!doctype html> <html> '>, <Block Node: title. Contents: [<Text Node: 'Network Portal'>]>, <Text Node: '</title> '>, <Block Node: cssreset. Contents: []>, <Text Node: ' '>, <Block Node: csscommon. Contents: [<Text Node: ' <link rel="styleshee'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/portal-style.'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/jquery.reject'>]>, <Text Node: ' <link href="'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.qtip.m'>, <Block Node: cssspecial. Contents: []>, <Text Node: ' '>, <Block Node: jscommon. Contents: [<Text Node: ' <!--<script type="te'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'cytoscapeweb/js/json2.min'>]>, <Text Node: ' '>, <Block Node: jsspecial. Contents: []>, <Text Node: ' <script type="text/j'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/main.js"></sc'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/collapsing_di'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.tables'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.tables'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.jcarou'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.qtip.m'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.reject'>, <Block Node: basewrap. Contents: [<Text Node: '<div id="wrap-no-line">'>]>, <Text Node: ' <div id="header"> '>, <django.template.defaulttags.URLNode object at 0x7f127e39fd90>, <Text Node: '"><img alt="Logo" src="'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/logo-text.png"></a'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/isb_logo.png"></a>'>, <IfNode>, <Text Node: ' --> <li><a '>, <django.template.defaulttags.URLNode object at 0x7f127e3a0450>, <Text Node: '">About</a></li> <li><'>, <django.template.defaulttags.URLNode object at 0x7f127e3a0410>, <Text Node: '">Contact</a></li> <li'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'apidocuments">API</a></li'>, <django.template.defaulttags.LoadNode object at 0x7f127e3a0610>, <Text Node: ' <div id="nav"> '>, <django.template.base.SimpleNode object at 0x7f127e3a0690>, <Text Node: '"><a href="/">Home</a></l'>, <django.template.base.SimpleNode object at 0x7f127e3a0710>, <Text Node: '"><a href="/search">Searc'>, <django.template.base.SimpleNode object at 0x7f127e3a0790>, <Text Node: '"><a href="/species">Spec'>, <django.template.base.SimpleNode object at 0x7f127e3a0810>, <Text Node: '"><a href="/workspace">Wo'>, <IfNode>, <Text Node: ' <li class="'>, <django.template.base.SimpleNode object at 0x7f127e3a0a10>, <Text Node: '"><a href="/help/" title='>, <django.template.base.SimpleNode object at 0x7f127e3a0a90>, <Text Node: '"><a href="/analysis/gene'>, <Text Node: ' <div id="content">'>, <Block Node: content. Contents: []>, <Text Node: ' </div>'>, <Text Node: ' <div id="footer"> '>, <Block Node: footer. Contents: [<Text Node: ' <!--<a href="ht'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/kbase-logo.jpg"></'>, <django.template.defaulttags.URLNode object at 0x7f127e3a0b10>, <Text Node: '">Development</a> '>, <django.template.defaulttags.URLNode object at 0x7f127e3a0e10>, <Text Node: '">Home</a></p> '>]>, <Text Node: ' </div>'>, <Text Node: ' <center> '>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/kbase-logo.jpg"></'>, <Text Node: ' </body> </html> '>] |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
/usr/lib/python2.7/site-packages/django/template/debug.py
in render_node
if not hasattr(e, 'django_template_source'):
e.django_template_source = token.source
class DebugNodeList(NodeList):
def render_node(self, node, context):
try:
return node.render(context)...
except Exception as e:
if not hasattr(e, 'django_template_source'):
e.django_template_source = node.source
raise
Variable | Value |
---|---|
node | <Block Node: content. Contents: []> |
self | [<django.template.defaulttags.LoadNode object at 0x7f127e3a2190>, <PrefixNode for 'STATIC_URL'>, <Text Node: '<!doctype html> <html> '>, <Block Node: title. Contents: [<Text Node: 'Network Portal'>]>, <Text Node: '</title> '>, <Block Node: cssreset. Contents: []>, <Text Node: ' '>, <Block Node: csscommon. Contents: [<Text Node: ' <link rel="styleshee'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/portal-style.'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/jquery.reject'>]>, <Text Node: ' <link href="'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.qtip.m'>, <Block Node: cssspecial. Contents: []>, <Text Node: ' '>, <Block Node: jscommon. Contents: [<Text Node: ' <!--<script type="te'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'cytoscapeweb/js/json2.min'>]>, <Text Node: ' '>, <Block Node: jsspecial. Contents: []>, <Text Node: ' <script type="text/j'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/main.js"></sc'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/collapsing_di'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.tables'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.tables'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.jcarou'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.qtip.m'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.reject'>, <Block Node: basewrap. Contents: [<Text Node: '<div id="wrap-no-line">'>]>, <Text Node: ' <div id="header"> '>, <django.template.defaulttags.URLNode object at 0x7f127e39fd90>, <Text Node: '"><img alt="Logo" src="'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/logo-text.png"></a'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/isb_logo.png"></a>'>, <IfNode>, <Text Node: ' --> <li><a '>, <django.template.defaulttags.URLNode object at 0x7f127e3a0450>, <Text Node: '">About</a></li> <li><'>, <django.template.defaulttags.URLNode object at 0x7f127e3a0410>, <Text Node: '">Contact</a></li> <li'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'apidocuments">API</a></li'>, <django.template.defaulttags.LoadNode object at 0x7f127e3a0610>, <Text Node: ' <div id="nav"> '>, <django.template.base.SimpleNode object at 0x7f127e3a0690>, <Text Node: '"><a href="/">Home</a></l'>, <django.template.base.SimpleNode object at 0x7f127e3a0710>, <Text Node: '"><a href="/search">Searc'>, <django.template.base.SimpleNode object at 0x7f127e3a0790>, <Text Node: '"><a href="/species">Spec'>, <django.template.base.SimpleNode object at 0x7f127e3a0810>, <Text Node: '"><a href="/workspace">Wo'>, <IfNode>, <Text Node: ' <li class="'>, <django.template.base.SimpleNode object at 0x7f127e3a0a10>, <Text Node: '"><a href="/help/" title='>, <django.template.base.SimpleNode object at 0x7f127e3a0a90>, <Text Node: '"><a href="/analysis/gene'>, <Text Node: ' <div id="content">'>, <Block Node: content. Contents: []>, <Text Node: ' </div>'>, <Text Node: ' <div id="footer"> '>, <Block Node: footer. Contents: [<Text Node: ' <!--<a href="ht'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/kbase-logo.jpg"></'>, <django.template.defaulttags.URLNode object at 0x7f127e3a0b10>, <Text Node: '">Development</a> '>, <django.template.defaulttags.URLNode object at 0x7f127e3a0e10>, <Text Node: '">Home</a></p> '>]>, <Text Node: ' </div>'>, <Text Node: ' <center> '>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/kbase-logo.jpg"></'>, <Text Node: ' </body> </html> '>] |
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
/usr/lib/python2.7/site-packages/django/template/loader_tags.py
in render
push = block = block_context.pop(self.name)
if block is None:
block = self
# Create new block so we can store context without thread-safety issues.
block = type(self)(block.name, block.nodelist)
block.context = context
context['block'] = block
result = block.nodelist.render(context)...
if push is not None:
block_context.push(self.name, push)
return result
def super(self):
if not hasattr(self, 'context'):
Variable | Value |
---|---|
push | <Block Node: content. Contents: [<Text Node: ' <h5><span class="search_'>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a> '>, <For Node: for network in species.network_set.all, tail_len: 5>, <Text Node: ' </span> </h5> <div id'>, <Variable Node: gene.name>, <Text Node: '</a></li> <li><a cl'>, <Text Node: ' <li><a class="gene'>, <Variable Node: bicluster_pssms>, <Text Node: '; $(document).'>, <Variable Node: gene.bicluster_set.count>, <Text Node: ', "'>, <Variable Node: gene.name>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f127e38a490>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f127e38a4d0>, <Text Node: '", '>, <IfNode>, <Text Node: ' var circle'>, <Variable Node: gene.name>, <Text Node: '', succ'>, <Variable Node: preview_motifs>, <Text Node: '); '>, <Variable Node: gene.display_name>, <Text Node: '</h5> <p><span '>, <Variable Node: gene.description>, <Text Node: '</span></p> <d'>, <Variable Node: gene.functions.count>, <Text Node: ')</h5> '>, <IfNode>, <Text Node: ' <!-- <h3'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>, <Text Node: ' </div> <div id='>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a><br/> <st'>, <Variable Node: gene.name>, <Text Node: ' <br/> <stron'>, <Variable Node: gene.geneid>, <Text Node: '">'>, <Variable Node: gene.geneid>, <Text Node: ' (NCBI) </a>, <a href="ht'>, <Variable Node: gene.name>, <Text Node: '">'>, <Variable Node: gene.name>, <Text Node: ' (MicrobesOnline) </a><br'>, <IfNode>, <Text Node: '</i><br/> <h5'>, <IfNode>, <Text Node: ' </table> '>, <IfNode>, <Text Node: '--> </div>'>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e389690>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e389650>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e389610>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e389550>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e38ba90>, <Text Node: ' </div> <!-- '>, <django.template.loader_tags.IncludeNode object at 0x7f127e38bad0>, <Text Node: ' </div> <div '>, <Variable Node: gene.name>, <Text Node: ' </h5> Please add y'>, <Text Node: ' </div>'>, <Text Node: ' <div style="display:n'>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f127e389ad0>, <Text Node: '" align="right"><br> <u'>, <Text Node: ' '>]> |
block_context | <django.template.loader_tags.BlockContext object at 0x7f127e389d10> |
block | <Block Node: content. Contents: [<Text Node: ' <h5><span class="search_'>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a> '>, <For Node: for network in species.network_set.all, tail_len: 5>, <Text Node: ' </span> </h5> <div id'>, <Variable Node: gene.name>, <Text Node: '</a></li> <li><a cl'>, <Text Node: ' <li><a class="gene'>, <Variable Node: bicluster_pssms>, <Text Node: '; $(document).'>, <Variable Node: gene.bicluster_set.count>, <Text Node: ', "'>, <Variable Node: gene.name>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f127e38a490>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f127e38a4d0>, <Text Node: '", '>, <IfNode>, <Text Node: ' var circle'>, <Variable Node: gene.name>, <Text Node: '', succ'>, <Variable Node: preview_motifs>, <Text Node: '); '>, <Variable Node: gene.display_name>, <Text Node: '</h5> <p><span '>, <Variable Node: gene.description>, <Text Node: '</span></p> <d'>, <Variable Node: gene.functions.count>, <Text Node: ')</h5> '>, <IfNode>, <Text Node: ' <!-- <h3'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>, <Text Node: ' </div> <div id='>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a><br/> <st'>, <Variable Node: gene.name>, <Text Node: ' <br/> <stron'>, <Variable Node: gene.geneid>, <Text Node: '">'>, <Variable Node: gene.geneid>, <Text Node: ' (NCBI) </a>, <a href="ht'>, <Variable Node: gene.name>, <Text Node: '">'>, <Variable Node: gene.name>, <Text Node: ' (MicrobesOnline) </a><br'>, <IfNode>, <Text Node: '</i><br/> <h5'>, <IfNode>, <Text Node: ' </table> '>, <IfNode>, <Text Node: '--> </div>'>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e389690>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e389650>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e389610>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e389550>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e38ba90>, <Text Node: ' </div> <!-- '>, <django.template.loader_tags.IncludeNode object at 0x7f127e38bad0>, <Text Node: ' </div> <div '>, <Variable Node: gene.name>, <Text Node: ' </h5> Please add y'>, <Text Node: ' </div>'>, <Text Node: ' <div style="display:n'>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f127e389ad0>, <Text Node: '" align="right"><br> <u'>, <Text Node: ' '>]> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
self | <Block Node: content. Contents: []> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
# extend_nodelist().
contains_nontext = False
def render(self, context):
bits = []
for node in self:
if isinstance(node, Node):
bit = self.render_node(node, context)...
else:
bit = node
bits.append(force_text(bit))
return mark_safe(''.join(bits))
def get_nodes_by_type(self, nodetype):
Variable | Value |
---|---|
node | <django.template.loader_tags.IncludeNode object at 0x7f127e389650> |
bit | u'\n </div>\n <div id="tab-regulator" class="sub-page">\n ' |
bits | [u'\n<h5><span class="search_help"> Organism : <a href="/', u'gsu', u'">', u'Geobacter sulfurreducens', u'</a>\n | Module List : ', u'\n \t\t\t\t <a href="/gsu/network/1" title="Explore Network"><img align="center" src="/static/images/network.gif"/></a></a>\n \t\t\t\t\t', u'\n </span>\n</h5>\n<div id="bicluster-top">\n <div class="sub-page">\n <div id="tabs" class="sub-page">\n <ul>\n\t <li><a class="name" href="#tab-main">', u'GSU0598', u'</a></li>\n\t <li><a class="network" href="#tab-network">Network</a></li>\n\t <li><a class="regulator" href="#tab-regulator">Regulation</a></li>\n\t <li><a class="motif" href="#tab-motif">Motifs</a></li>\n\t <li><a class="function" href="#tab-function">Functions</a></li>\n\t <li><a class="genes" href="#tab-gene">Module Members</a></li>\n\t ', u'\n\t <li><a class="gene-help" href="#tab-help">Help</a></li>\n\t <li><a class="social" href="#tab-social">Social</a></li>\n </ul>\n <div id="tab-main">\n\t\t <div class="main">\n <script type="text/javascript">\n var django_pssms = ', u'{2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]], 2292: [[0.0, 1.0, 0.0, 0.0], [0.75, 0.0, 0.0, 0.25], [0.25, 0.25, 0.0, 0.5], [0.25, 0.0, 0.75, 0.0], [0.25, 0.0, 0.0, 0.75], [0.25, 0.0, 0.75, 0.0], [0.25, 0.0, 0.75, 0.0], [0.0, 0.75, 0.0, 0.25], [0.0, 0.0, 1.0, 0.0], [0.5, 0.25, 0.0, 0.25], [0.75, 0.0, 0.0, 0.25], [0.25, 0.0, 0.75, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.75, 0.0, 0.25, 0.0], [0.25, 0.5, 0.25, 0.0], [0.25, 0.0, 0.5, 0.25], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.5, 0.25, 0.0, 0.25], [0.0, 0.0, 0.0, 1.0], [0.5, 0.0, 0.0, 0.5], [0.0, 0.0, 0.0, 1.0]], 2293: [[0.125, 0.75, 0.125, 0.0], [0.0, 0.0, 0.125, 0.875], [0.0, 0.0, 0.0, 1.0], [0.125, 0.0, 0.375, 0.5], [0.125, 0.625, 0.0, 0.25], [0.25, 0.375, 0.125, 0.25], [1.0, 0.0, 0.0, 0.0], [0.125, 0.0, 0.0, 0.875], [0.0, 0.0, 0.0, 1.0], [0.375, 0.0, 0.0, 0.625], [0.0, 0.0, 0.125, 0.875], [0.125, 0.0, 0.25, 0.625], [0.25, 0.0, 0.75, 0.0], [0.0, 0.0, 0.875, 0.125], [0.0, 0.0, 0.0, 1.0]]}', u';\n $(document).ready(function() {\n var loaded = [false, false, false, false, false, false, false, false];\n $(\'#tabs\').tabs({\n // load network and motif tabs on demand\n activate: function (event, ui) {\n var index = $(\'#tabs\').tabs("option", "active");\n if (!loaded[index]) {\n switch (index) {\n case 1:\n var vis = nwhelpers.initNetworkTab(', u'2', u', "', u'GSU0598', u'",\n "', u'/static/cytoscapeweb/swf/CytoscapeWeb', u'",\n "', u'/static/cytoscapeweb/swf/playerProductInstall', u'",\n nwhelpers.load_popup);\... <trimmed 10814 bytes string> |
self | [<Text Node: ' <h5><span class="search_'>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a> '>, <For Node: for network in species.network_set.all, tail_len: 5>, <Text Node: ' </span> </h5> <div id'>, <Variable Node: gene.name>, <Text Node: '</a></li> <li><a cl'>, <Text Node: ' <li><a class="gene'>, <Variable Node: bicluster_pssms>, <Text Node: '; $(document).'>, <Variable Node: gene.bicluster_set.count>, <Text Node: ', "'>, <Variable Node: gene.name>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f127e38a490>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f127e38a4d0>, <Text Node: '", '>, <IfNode>, <Text Node: ' var circle'>, <Variable Node: gene.name>, <Text Node: '', succ'>, <Variable Node: preview_motifs>, <Text Node: '); '>, <Variable Node: gene.display_name>, <Text Node: '</h5> <p><span '>, <Variable Node: gene.description>, <Text Node: '</span></p> <d'>, <Variable Node: gene.functions.count>, <Text Node: ')</h5> '>, <IfNode>, <Text Node: ' <!-- <h3'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>, <Text Node: ' </div> <div id='>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a><br/> <st'>, <Variable Node: gene.name>, <Text Node: ' <br/> <stron'>, <Variable Node: gene.geneid>, <Text Node: '">'>, <Variable Node: gene.geneid>, <Text Node: ' (NCBI) </a>, <a href="ht'>, <Variable Node: gene.name>, <Text Node: '">'>, <Variable Node: gene.name>, <Text Node: ' (MicrobesOnline) </a><br'>, <IfNode>, <Text Node: '</i><br/> <h5'>, <IfNode>, <Text Node: ' </table> '>, <IfNode>, <Text Node: '--> </div>'>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e389690>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e389650>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e389610>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e389550>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e38ba90>, <Text Node: ' </div> <!-- '>, <django.template.loader_tags.IncludeNode object at 0x7f127e38bad0>, <Text Node: ' </div> <div '>, <Variable Node: gene.name>, <Text Node: ' </h5> Please add y'>, <Text Node: ' </div>'>, <Text Node: ' <div style="display:n'>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f127e389ad0>, <Text Node: '" align="right"><br> <u'>, <Text Node: ' '>] |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
/usr/lib/python2.7/site-packages/django/template/debug.py
in render_node
if not hasattr(e, 'django_template_source'):
e.django_template_source = token.source
class DebugNodeList(NodeList):
def render_node(self, node, context):
try:
return node.render(context)...
except Exception as e:
if not hasattr(e, 'django_template_source'):
e.django_template_source = node.source
raise
Variable | Value |
---|---|
node | <django.template.loader_tags.IncludeNode object at 0x7f127e389650> |
self | [<Text Node: ' <h5><span class="search_'>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a> '>, <For Node: for network in species.network_set.all, tail_len: 5>, <Text Node: ' </span> </h5> <div id'>, <Variable Node: gene.name>, <Text Node: '</a></li> <li><a cl'>, <Text Node: ' <li><a class="gene'>, <Variable Node: bicluster_pssms>, <Text Node: '; $(document).'>, <Variable Node: gene.bicluster_set.count>, <Text Node: ', "'>, <Variable Node: gene.name>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f127e38a490>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f127e38a4d0>, <Text Node: '", '>, <IfNode>, <Text Node: ' var circle'>, <Variable Node: gene.name>, <Text Node: '', succ'>, <Variable Node: preview_motifs>, <Text Node: '); '>, <Variable Node: gene.display_name>, <Text Node: '</h5> <p><span '>, <Variable Node: gene.description>, <Text Node: '</span></p> <d'>, <Variable Node: gene.functions.count>, <Text Node: ')</h5> '>, <IfNode>, <Text Node: ' <!-- <h3'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>, <Text Node: ' </div> <div id='>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a><br/> <st'>, <Variable Node: gene.name>, <Text Node: ' <br/> <stron'>, <Variable Node: gene.geneid>, <Text Node: '">'>, <Variable Node: gene.geneid>, <Text Node: ' (NCBI) </a>, <a href="ht'>, <Variable Node: gene.name>, <Text Node: '">'>, <Variable Node: gene.name>, <Text Node: ' (MicrobesOnline) </a><br'>, <IfNode>, <Text Node: '</i><br/> <h5'>, <IfNode>, <Text Node: ' </table> '>, <IfNode>, <Text Node: '--> </div>'>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e389690>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e389650>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e389610>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e389550>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127e38ba90>, <Text Node: ' </div> <!-- '>, <django.template.loader_tags.IncludeNode object at 0x7f127e38bad0>, <Text Node: ' </div> <div '>, <Variable Node: gene.name>, <Text Node: ' </h5> Please add y'>, <Text Node: ' </div>'>, <Text Node: ' <div style="display:n'>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f127e389ad0>, <Text Node: '" align="right"><br> <u'>, <Text Node: ' '>] |
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
/usr/lib/python2.7/site-packages/django/template/loader_tags.py
in render
values = {
name: var.resolve(context)
for name, var in six.iteritems(self.extra_context)
}
if self.isolated_context:
return template.render(context.new(values))
with context.push(**values):
return template.render(context)...
except Exception:
if context.template.engine.debug:
raise
return ''
Variable | Value |
---|---|
self | <django.template.loader_tags.IncludeNode object at 0x7f127e389650> |
values | {} |
template | <django.template.base.Template object at 0x7f127e38bd10> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
"Display stage -- can be called many times"
context.render_context.push()
try:
if context.template is None:
with context.bind_template(self):
return self._render(context)
else:
return self._render(context)...
finally:
context.render_context.pop()
class Token(object):
def __init__(self, token_type, contents):
Variable | Value |
---|---|
self | <django.template.base.Template object at 0x7f127e38bd10> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in _render
def __iter__(self):
for node in self.nodelist:
for subnode in node:
yield subnode
def _render(self, context):
return self.nodelist.render(context)...
def render(self, context):
"Display stage -- can be called many times"
context.render_context.push()
try:
if context.template is None:
Variable | Value |
---|---|
self | <django.template.base.Template object at 0x7f127e38bd10> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
# extend_nodelist().
contains_nontext = False
def render(self, context):
bits = []
for node in self:
if isinstance(node, Node):
bit = self.render_node(node, context)...
else:
bit = node
bits.append(force_text(bit))
return mark_safe(''.join(bits))
def get_nodes_by_type(self, nodetype):
Variable | Value |
---|---|
node | <Variable Node: influence_biclusters|influences_to_gene_description_map> |
bit | u' </h5> <span class="search_help">(Mouseover regulator name to see its description)</span> \n<p>\n<div class="tab-contents">\n <script type="text/javascript">\n $(document).ready(function() {\n ' |
bits | [u'', u'\n', u'', u'\n<a class="help" href="#regulation"><img align="right" src="/static/images/help.png" /></a>\n<h5> Regulation information for ', u'GSU0598', u' </h5> <span class="search_help">(Mouseover regulator name to see its description)</span> \n<p>\n<div class="tab-contents">\n <script type="text/javascript">\n $(document).ready(function() {\n '] |
self | [<django.template.defaulttags.LoadNode object at 0x7f127e39b510>, <Text Node: ' '>, <django.template.defaulttags.LoadNode object at 0x7f127f4d86d0>, <Text Node: ' <a class="help" href="#r'>, <Variable Node: gene>, <Text Node: ' </h5> <span class="searc'>, <Variable Node: influence_biclusters|influences_to_gene_description_map>, <Text Node: '; $('.reggene').o'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>] |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
/usr/lib/python2.7/site-packages/django/template/debug.py
in render_node
if not hasattr(e, 'django_template_source'):
e.django_template_source = token.source
class DebugNodeList(NodeList):
def render_node(self, node, context):
try:
return node.render(context)...
except Exception as e:
if not hasattr(e, 'django_template_source'):
e.django_template_source = node.source
raise
Variable | Value |
---|---|
node | <Variable Node: influence_biclusters|influences_to_gene_description_map> |
self | [<django.template.defaulttags.LoadNode object at 0x7f127e39b510>, <Text Node: ' '>, <django.template.defaulttags.LoadNode object at 0x7f127f4d86d0>, <Text Node: ' <a class="help" href="#r'>, <Variable Node: gene>, <Text Node: ' </h5> <span class="searc'>, <Variable Node: influence_biclusters|influences_to_gene_description_map>, <Text Node: '; $('.reggene').o'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>] |
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
/usr/lib/python2.7/site-packages/django/template/debug.py
in render
e.django_template_source = node.source
raise
class DebugVariableNode(VariableNode):
def render(self, context):
try:
output = self.filter_expression.resolve(context)...
output = template_localtime(output, use_tz=context.use_tz)
output = localize(output, use_l10n=context.use_l10n)
output = force_text(output)
except UnicodeDecodeError:
return ''
except Exception as e:
Variable | Value |
---|---|
self | <Variable Node: influence_biclusters|influences_to_gene_description_map> |
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in resolve
else:
arg_vals.append(arg.resolve(context))
if getattr(func, 'expects_localtime', False):
obj = template_localtime(obj, context.use_tz)
if getattr(func, 'needs_autoescape', False):
new_obj = func(obj, autoescape=context.autoescape, *arg_vals)
else:
new_obj = func(obj, *arg_vals)...
if getattr(func, 'is_safe', False) and isinstance(obj, SafeData):
obj = mark_safe(new_obj)
elif isinstance(obj, EscapeData):
obj = mark_for_escaping(new_obj)
else:
obj = new_obj
Variable | Value |
---|---|
obj | [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)] |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)], 'count_regulated_biclusters': 23L, 'motif_id': 2699, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2698: [[0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.666667, 0.0, 0.0], [0.166667, 0.0, 0.333333, 0.5], [0.5, 0.0, 0.5, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.333333, 0.0, 0.5, 0.166667], [0.833333, 0.0, 0.166667, 0.0], [0.833333, 0.166667, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.5, 0.166667, 0.333333, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.166667, 0.666667, 0.0, 0.166667], [0.333333, 0.333333, 0.0, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.333333, 0.0, 0.666667, 0.0], [0.0, 0.0, 0.666667, 0.333333]], 2699: [[0.0, 1.0, 0.0, 0.0], [0.6, 0.4, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.0, 0.2], [0.6, 0.0, 0.0, 0.4], [0.0, 0.0, 0.4, 0.6], [0.0, 0.4, 0.4, 0.2], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.0, 0.2], [0.8, 0.2, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.2, 0.0, 0.8, 0.0], [0.6, 0.0, 0.4, 0.0], [0.6, 0.4, 0.0, 0.0], [0.4, 0.0, 0.6, 0.0], [0.4, 0.0, 0.2, 0.4], [0.2, 0.4, 0.2, 0.2], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [0.8, 0.0, 0.2, 0.0]]}, 'functions': [<Function: Function: COG2204, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2292, 2698], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000156">GO:0000156</a>) two-component response regulator activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0000160">GO:0000160</a>) two-component signal transduction system (phosphorelay)', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003700">GO:0003700</a>) sequence-specific DNA binding transcription factor activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005622">GO:0005622</a>) intracellular', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006355">GO:0006355</a>) regulation of transcription, DNA-dependent', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0008134">GO:0008134</a>) transcription factor binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0017111">GO:0017111</a>) nucleoside-triphosphatase activity'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2204">COG2204</a>) Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0039>, <Gene: GSU0542>, <Gene: GSU0598>, <Gene: GSU0754>, <Gene: GSU0755>, <Gen... <trimmed 8683 bytes string> |
arg_vals | [] |
self | <django.template.base.FilterExpression object at 0x7f127f4d8c90> |
args | [] |
ignore_failures | False |
func | <function influences_to_gene_description_map at 0x7f128c27c140> |
/local/apache-stuff/network_portal/web_app/networks/templatetags/filters.py
in influences_to_gene_description_map
# note that parts might not be a gene - could be environmental factor
for part in influence.parts.all():
# print "part=%s" % (str(part),)
if part.gene:
gene_description_map[part.name] = part.gene.description.strip()
result = 'var descriptionMap = {}\n';
for key, description in gene_description_map.items():
result += 'descriptionMap[\'' + key + '\'] = "' + description + '";\n';...
#print "# descriptions: ", len(gene_description_map)
return mark_safe(result);
@register.filter
def motif1consensus(bicluster):
Variable | Value |
---|---|
description | None |
influence | <Influence: GSU3217> |
influence_biclusters | [(<Bicluster: Bicluster 66>, <Influence: GSU0372>), (<Bicluster: Bicluster 66>, <Influence: GSU0551>), (<Bicluster: Bicluster 66>, <Influence: GSU0770>), (<Bicluster: Bicluster 66>, <Influence: GSU2237>), (<Bicluster: Bicluster 66>, <Influence: GSU3087>), (<Bicluster: Bicluster 269>, <Influence: GSU0951>), (<Bicluster: Bicluster 269>, <Influence: GSU1428>), (<Bicluster: Bicluster 269>, <Influence: GSU1569>), (<Bicluster: Bicluster 269>, <Influence: GSU2202>), (<Bicluster: Bicluster 269>, <Influence: GSU2941>), (<Bicluster: Bicluster 269>, <Influence: GSU3217>)] |
result | u'var descriptionMap = {}\ndescriptionMap[\'GSU2237\'] = "DNA-directed RNA polymerase, omega subunit (NCBI)";\ndescriptionMap[\'GSU3217\'] = "sigma-54 dependent DNA-binding response regulator (VIMSS)";\ndescriptionMap[\'GSU2941\'] = "transcriptional regulator, LysR family (VIMSS)";\ndescriptionMap[\'GSU0551\'] = "conserved hypothetical protein (VIMSS)";\ndescriptionMap[\'GSU1569\'] = "transcriptional regulator, CopG family (VIMSS)";\ndescriptionMap[\'GSU0770\'] = "transcriptional regulator, TetR family (VIMSS)";\n' |
key | u'GSU1428' |
bicluster_id | <Bicluster: Bicluster 269> |
gene_description_map | {u'GSU0372': u'sigma-54 dependent DNA-binding response regulator (VIMSS)', u'GSU0551': u'conserved hypothetical protein (VIMSS)', u'GSU0770': u'transcriptional regulator, TetR family (VIMSS)', u'GSU0951': u'transcriptional regulator, TetR family (VIMSS)', u'GSU1428': None, u'GSU1569': u'transcriptional regulator, CopG family (VIMSS)', u'GSU2202': u'transcriptional regulator, LysR family (VIMSS)', u'GSU2237': u'DNA-directed RNA polymerase, omega subunit (NCBI)', u'GSU2941': u'transcriptional regulator, LysR family (VIMSS)', u'GSU3087': u'transcriptional regulator, Sir2 family (VIMSS)', u'GSU3217': u'sigma-54 dependent DNA-binding response regulator (VIMSS)'} |
No GET data
No POST data
No FILES data
No cookie data
Variable | Value |
---|---|
mod_wsgi.listener_port | '443' |
HTTP_REFERER | 'http://networks.systemsbiology.net/gsu/gene/GSU0598' |
CONTEXT_DOCUMENT_ROOT | '/local/apache-stuff/network_portal' |
SERVER_SOFTWARE | 'Apache' |
SCRIPT_NAME | u'' |
mod_wsgi.enable_sendfile | '0' |
mod_wsgi.handler_script | '' |
SERVER_SIGNATURE | '' |
REQUEST_METHOD | 'GET' |
PATH_INFO | u'/gsu/gene/GSU0598' |
SERVER_PROTOCOL | 'HTTP/1.1' |
QUERY_STRING | '' |
HTTP_X_REAL_IP | '34.230.84.106' |
HTTP_USER_AGENT | 'claudebot' |
HTTP_CONNECTION | 'close' |
SERVER_NAME | 'networks.systemsbiology.net' |
REMOTE_ADDR | '10.3.0.181' |
mod_wsgi.queue_start | '1710850231986591' |
mod_wsgi.request_handler | 'wsgi-script' |
wsgi.url_scheme | 'https' |
PATH_TRANSLATED | '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py/gsu/gene/GSU0598' |
SERVER_PORT | '443' |
wsgi.multiprocess | True |
mod_wsgi.input_chunked | '0' |
SERVER_ADDR | '10.2.8.50' |
DOCUMENT_ROOT | '/local/apache-stuff/network_portal' |
mod_wsgi.process_group | 'networks-ssl' |
HTTP_X_FORWARDED_PROTO | 'https' |
SCRIPT_FILENAME | '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py' |
SERVER_ADMIN | 'root@localhost' |
wsgi.input | <mod_wsgi.Input object at 0x7f126f03d1f0> |
HTTP_HOST | 'networks.systemsbiology.net' |
CONTEXT_PREFIX | '' |
wsgi.multithread | True |
mod_wsgi.callable_object | 'application' |
REQUEST_URI | '/gsu/gene/GSU0598' |
HTTP_ACCEPT | '*/*' |
wsgi.version | (1, 0) |
GATEWAY_INTERFACE | 'CGI/1.1' |
HTTP_X_FORWARDED_FOR | '34.230.84.106' |
wsgi.errors | <mod_wsgi.Log object at 0x7f126f03d970> |
REMOTE_PORT | '50656' |
mod_wsgi.listener_host | '' |
REQUEST_SCHEME | 'https' |
mod_wsgi.version | (3, 4) |
wsgi.run_once | False |
mod_wsgi.application_group | '' |
mod_wsgi.script_reloading | '1' |
wsgi.file_wrapper | '' |
CSRF_COOKIE | u'JI4ypAtatEBoiwnIBW1emKmVY6mEsqFG' |
UNIQUE_ID | 'ZfmAt@nWa@cPlUfxZ1wAygAAAAs' |
nwportal.settings.production
Setting | Value |
---|---|
SECURE_BROWSER_XSS_FILTER | False |
TIME_ZONE | 'America/Vancouver' |
CSRF_COOKIE_SECURE | False |
LANGUAGE_CODE | 'en-us' |
ROOT_URLCONF | 'nwportal.urls' |
MANAGERS | () |
KBASE_UJS_SERVICE_URL | 'https://kbase.us/services/userandjobstate' |
SILENCED_SYSTEM_CHECKS | [] |
DEFAULT_CHARSET | 'utf-8' |
SESSION_SERIALIZER | 'django.contrib.sessions.serializers.PickleSerializer' |
STATIC_ROOT | '/local/htdocs/nwportal' |
USERDATA_ROOT | '/local/nwportaluserdata' |
USE_THOUSAND_SEPARATOR | False |
ALLOWED_HOSTS | [] |
MESSAGE_STORAGE | 'django.contrib.messages.storage.fallback.FallbackStorage' |
EMAIL_SUBJECT_PREFIX | '[Django] ' |
SERVER_EMAIL | 'root@localhost' |
SECURE_HSTS_SECONDS | 0 |
STATICFILES_FINDERS | ('django.contrib.staticfiles.finders.FileSystemFinder', 'django.contrib.staticfiles.finders.AppDirectoriesFinder') |
SESSION_CACHE_ALIAS | 'default' |
SESSION_COOKIE_DOMAIN | None |
SESSION_COOKIE_NAME | 'sessionid' |
ORGANISM_SERVICE_HOST | 'http://condor:5000' |
TIME_INPUT_FORMATS | ('%H:%M:%S', '%H:%M:%S.%f', '%H:%M') |
SECURE_REDIRECT_EXEMPT | [] |
DATABASES | {'default': {'ATOMIC_REQUESTS': False, 'AUTOCOMMIT': True, 'CONN_MAX_AGE': 0, 'ENGINE': 'django.db.backends.postgresql_psycopg2', 'HOST': '', 'NAME': 'network_portal', 'OPTIONS': {}, 'PASSWORD': u'********************', 'PORT': '', 'TEST': {'CHARSET': None, 'COLLATION': None, 'MIRROR': None, 'NAME': None}, 'TIME_ZONE': 'UTC', 'USER': 'dj_ango'}} |
EMAIL_SSL_KEYFILE | u'********************' |
FILE_UPLOAD_DIRECTORY_PERMISSIONS | None |
FILE_UPLOAD_PERMISSIONS | None |
FILE_UPLOAD_HANDLERS | ('django.core.files.uploadhandler.MemoryFileUploadHandler', 'django.core.files.uploadhandler.TemporaryFileUploadHandler') |
TEMPLATE_CONTEXT_PROCESSORS | ('django.contrib.auth.context_processors.auth', 'django.core.context_processors.request', 'django.core.context_processors.static', 'django.core.context_processors.debug', 'django.contrib.messages.context_processors.messages') |
DEFAULT_CONTENT_TYPE | 'text/html' |
APPEND_SLASH | True |
FIRST_DAY_OF_WEEK | 0 |
DATABASE_ROUTERS | [] |
DEFAULT_TABLESPACE | '' |
YEAR_MONTH_FORMAT | 'F Y' |
STATICFILES_STORAGE | 'django.contrib.staticfiles.storage.StaticFilesStorage' |
CACHES | {'default': {'BACKEND': 'django.core.cache.backends.locmem.LocMemCache'}} |
SESSION_COOKIE_PATH | '/' |
SECURE_CONTENT_TYPE_NOSNIFF | False |
MIDDLEWARE_CLASSES | ('django.middleware.csrf.CsrfViewMiddleware', 'django.middleware.common.CommonMiddleware', 'django.contrib.sessions.middleware.SessionMiddleware', 'django.middleware.csrf.CsrfViewMiddleware', 'django.contrib.auth.middleware.AuthenticationMiddleware', 'django.contrib.messages.middleware.MessageMiddleware') |
KBASE_USER | '' |
THOUSAND_SEPARATOR | ',' |
SECRET_KEY | u'********************' |
LANGUAGE_COOKIE_NAME | 'django_language' |
DEFAULT_INDEX_TABLESPACE | '' |
LOGGING_CONFIG | 'logging.config.dictConfig' |
TEMPLATE_LOADERS | ('django.template.loaders.filesystem.Loader', 'django.template.loaders.app_directories.Loader') |
WSGI_APPLICATION | None |
TEMPLATE_DEBUG | True |
X_FRAME_OPTIONS | 'SAMEORIGIN' |
AUTHENTICATION_BACKENDS | ('social_core.backends.google.GoogleOAuth2', 'django.contrib.auth.backends.ModelBackend') |
SOCIAL_AUTH_GOOGLE_OAUTH2_SECRET | u'********************' |
FORCE_SCRIPT_NAME | None |
USE_X_FORWARDED_HOST | False |
EMAIL_TIMEOUT | None |
SECURE_SSL_HOST | None |
SIGNING_BACKEND | 'django.core.signing.TimestampSigner' |
SESSION_COOKIE_SECURE | False |
CSRF_COOKIE_DOMAIN | None |
FILE_CHARSET | 'utf-8' |
DEBUG | True |
LANGUAGE_COOKIE_DOMAIN | None |
DEFAULT_FILE_STORAGE | 'django.core.files.storage.FileSystemStorage' |
INSTALLED_APPS | ('django.contrib.auth', 'django.contrib.contenttypes', 'django.contrib.sessions', 'django.contrib.sites', 'django.contrib.messages', 'django.contrib.staticfiles', 'django.contrib.humanize', 'django.contrib.admin', 'social_django', 'networks', 'inference', 'nwpadmin', 'search') |
LANGUAGES | (('af', 'Afrikaans'), ('ar', 'Arabic'), ('ast', 'Asturian'), ('az', 'Azerbaijani'), ('bg', 'Bulgarian'), ('be', 'Belarusian'), ('bn', 'Bengali'), ('br', 'Breton'), ('bs', 'Bosnian'), ('ca', 'Catalan'), ('cs', 'Czech'), ('cy', 'Welsh'), ('da', 'Danish'), ('de', 'German'), ('el', 'Greek'), ('en', 'English'), ('en-au', 'Australian English'), ('en-gb', 'British English'), ('eo', 'Esperanto'), ('es', 'Spanish'), ('es-ar', 'Argentinian Spanish'), ('es-mx', 'Mexican Spanish'), ('es-ni', 'Nicaraguan Spanish'), ('es-ve', 'Venezuelan Spanish'), ('et', 'Estonian'), ('eu', 'Basque'), ('fa', 'Persian'), ('fi', 'Finnish'), ('fr', 'French'), ('fy', 'Frisian'), ('ga', 'Irish'), ('gl', 'Galician'), ('he', 'Hebrew'), ('hi', 'Hindi'), ('hr', 'Croatian'), ('hu', 'Hungarian'), ('ia', 'Interlingua'), ('id', 'Indonesian'), ('io', 'Ido'), ('is', 'Icelandic'), ('it', 'Italian'), ('ja', 'Japanese'), ('ka', 'Georgian'), ('kk', 'Kazakh'), ('km', 'Khmer'), ('kn', 'Kannada'), ('ko', 'Korean'), ('lb', 'Luxembourgish'), ('lt', 'Lithuanian'), ('lv', 'Latvian'), ('mk', 'Macedonian'), ('ml', 'Malayalam'), ('mn', 'Mongolian'), ('mr', 'Marathi'), ('my', 'Burmese'), ('nb', 'Norwegian Bokmal'), ('ne', 'Nepali'), ('nl', 'Dutch'), ('nn', 'Norwegian Nynorsk'), ('os', 'Ossetic'), ('pa', 'Punjabi'), ('pl', 'Polish'), ('pt', 'Portuguese'), ('pt-br', 'Brazilian Portuguese'), ('ro', 'Romanian'), ('ru', 'Russian'), ('sk', 'Slovak'), ('sl', 'Slovenian'), ('sq', 'Albanian'), ('sr', 'Serbian'), ('sr-latn', 'Serbian Latin'), ('sv', 'Swedish'), ('sw', 'Swahili'), ('ta', 'Tamil'), ('te', 'Telugu'), ('th', 'Thai'), ('tr', 'Turkish'), ('tt', 'Tatar'), ('udm', 'Udmurt'), ('uk', 'Ukrainian'), ('ur', 'Urdu'), ('vi', 'Vietnamese'), ('zh-cn', 'Simplified Chinese'), ('zh-hans', 'Simplified Chinese'), ('zh-hant', 'Traditional Chinese'), ('zh-tw', 'Traditional Chinese')) |
USE_L10N | True |
SECURE_HSTS_INCLUDE_SUBDOMAINS | False |
STATICFILES_DIRS | ('/local/apache-stuff/network_portal/web_app/static',) |
PREPEND_WWW | False |
SECURE_PROXY_SSL_HEADER | None |
LANGUAGE_COOKIE_AGE | None |
KBASE_DATA_WORKSPACE | 'nwportal:nwportal_data' |
KBASE_INF_SERVICE_URL | 'http://140.221.67.196:7113' |
DEBUG_PROPAGATE_EXCEPTIONS | False |
KBASE_PASSWD | u'********************' |
MONTH_DAY_FORMAT | 'F j' |
LOGIN_URL | '/accounts/login/' |
SESSION_EXPIRE_AT_BROWSER_CLOSE | False |
SOCIAL_AUTH_GOOGLE_OAUTH2_KEY | u'********************' |
TIME_FORMAT | 'P' |
AUTH_USER_MODEL | 'auth.User' |
DATE_INPUT_FORMATS | ('%Y-%m-%d', '%m/%d/%Y', '%m/%d/%y', '%b %d %Y', '%b %d, %Y', '%d %b %Y', '%d %b, %Y', '%B %d %Y', '%B %d, %Y', '%d %B %Y', '%d %B, %Y') |
CSRF_COOKIE_NAME | 'csrftoken' |
EMAIL_HOST_PASSWORD | u'********************' |
PASSWORD_RESET_TIMEOUT_DAYS | u'********************' |
SESSION_FILE_PATH | None |
CACHE_MIDDLEWARE_ALIAS | 'default' |
SESSION_SAVE_EVERY_REQUEST | False |
ADMIN_MEDIA_PREFIX | '/static/admin/' |
NUMBER_GROUPING | 0 |
SESSION_ENGINE | 'django.contrib.sessions.backends.db' |
CSRF_FAILURE_VIEW | 'django.views.csrf.csrf_failure' |
CSRF_COOKIE_PATH | '/' |
LOGIN_REDIRECT_URL | '/accounts/profile/' |
KBASE_WS_SERVICE_URL | 'https://kbase.us/services/ws' |
PROJECT_ROOT | '/local/apache-stuff/network_portal/web_app/nwportal/settings/../..' |
DECIMAL_SEPARATOR | '.' |
IGNORABLE_404_URLS | () |
LOCALE_PATHS | () |
TEMPLATE_STRING_IF_INVALID | '' |
SOCIAL_AUTH_URL_NAMESPACE | 'social' |
SOLR_SELECT_MODULES | 'http://localhost:8983/solr/nwportal_adv/select/' |
LOGOUT_URL | '/accounts/logout/' |
EMAIL_USE_TLS | False |
SOLR_SUGGEST | 'http://localhost:8983/solr/nwportal/suggest/?wt=json&json.wrf=?' |
FIXTURE_DIRS | () |
EMAIL_HOST | 'localhost' |
DATE_FORMAT | 'N j, Y' |
MEDIA_ROOT | '' |
KBASE_CMRESULTS_WORKSPACE | 'nwportal:cmtestresults' |
DEFAULT_EXCEPTION_REPORTER_FILTER | 'django.views.debug.SafeExceptionReporterFilter' |
ADMINS | () |
FORMAT_MODULE_PATH | None |
DEFAULT_FROM_EMAIL | 'webmaster@localhost' |
MEDIA_URL | '' |
DATETIME_FORMAT | 'N j, Y, P' |
TEMPLATE_DIRS | ('/local/apache-stuff/network_portal/web_app/templates', '/local/apache-stuff/network_portal/web_app/networks/templates') |
SITE_ID | 1 |
DISALLOWED_USER_AGENTS | () |
ALLOWED_INCLUDE_ROOTS | () |
USE_I18N | True |
CMONKEY_RABBITMQ | u'********************' |
LOGGING | {'disable_existing_loggers': False, 'handlers': {'mail_admins': {'class': 'django.utils.log.AdminEmailHandler', 'level': 'ERROR'}}, 'loggers': {'django.request': {'handlers': ['mail_admins'], 'level': 'ERROR', 'propagate': True}}, 'version': 1} |
SHORT_DATE_FORMAT | 'm/d/Y' |
TEMPLATES | [] |
TEST_RUNNER | 'django.test.runner.DiscoverRunner' |
CACHE_MIDDLEWARE_KEY_PREFIX | u'********************' |
SECURE_SSL_REDIRECT | False |
KBASE_CM_SERVICE_URL | 'http://140.221.67.196:7112' |
SOLR_SELECT_GENES | 'http://localhost:8983/solr/nwportal/select/' |
FILE_UPLOAD_MAX_MEMORY_SIZE | 2621440 |
EMAIL_BACKEND | 'django.core.mail.backends.smtp.EmailBackend' |
CSRF_COOKIE_AGE | 31449600 |
EMAIL_USE_SSL | False |
SESSION_COOKIE_HTTPONLY | True |
MIGRATION_MODULES | {} |
SESSION_COOKIE_AGE | 1209600 |
SETTINGS_MODULE | 'nwportal.settings.production' |
USE_ETAGS | False |
LANGUAGES_BIDI | ('he', 'ar', 'fa', 'ur') |
FILE_UPLOAD_TEMP_DIR | None |
INTERNAL_IPS | () |
STATIC_URL | '/static/' |
EMAIL_PORT | 25 |
USE_TZ | True |
SHORT_DATETIME_FORMAT | 'm/d/Y P' |
TEST_NON_SERIALIZED_APPS | [] |
PASSWORD_HASHERS | u'********************' |
ABSOLUTE_URL_OVERRIDES | {} |
LANGUAGE_COOKIE_PATH | '/' |
CACHE_MIDDLEWARE_SECONDS | 600 |
EMAIL_SSL_CERTFILE | None |
CSRF_COOKIE_HTTPONLY | False |
DATETIME_INPUT_FORMATS | ('%Y-%m-%d %H:%M:%S', '%Y-%m-%d %H:%M:%S.%f', '%Y-%m-%d %H:%M', '%Y-%m-%d', '%m/%d/%Y %H:%M:%S', '%m/%d/%Y %H:%M:%S.%f', '%m/%d/%Y %H:%M', '%m/%d/%Y', '%m/%d/%y %H:%M:%S', '%m/%d/%y %H:%M:%S.%f', '%m/%d/%y %H:%M', '%m/%d/%y') |
EMAIL_HOST_USER | '' |
You're seeing this error because you have DEBUG = True
in your
Django settings file. Change that to False
, and Django will
display a standard page generated by the handler for this status code.