coercing to Unicode: need string or buffer, NoneType found
Request Method: | GET |
---|---|
Request URL: | https://networks.systemsbiology.net/gsu/gene/GSU1270 |
Django Version: | 1.8.3 |
Exception Type: | TypeError |
Exception Value: | coercing to Unicode: need string or buffer, NoneType found |
Exception Location: | /local/apache-stuff/network_portal/web_app/networks/templatetags/filters.py in influences_to_gene_description_map, line 182 |
Python Executable: | /usr/bin/python |
Python Version: | 2.7.5 |
Python Path: | ['/local/apache-stuff/network_portal/web_app', '/usr/lib64/python27.zip', '/usr/lib64/python2.7', '/usr/lib64/python2.7/plat-linux2', '/usr/lib64/python2.7/lib-tk', '/usr/lib64/python2.7/lib-old', '/usr/lib64/python2.7/lib-dynload', '/usr/lib64/python2.7/site-packages', '/usr/lib64/python2.7/site-packages/gtk-2.0', '/usr/lib/python2.7/site-packages'] |
Server time: | Mon, 18 Mar 2024 19:08:54 -0700 |
In template /local/apache-stuff/network_portal/web_app/networks/templates/gene_regulation_snippet.html
, error at line 9
1 | {% load filters %} |
---|---|
2 | {% load format_tags %} |
3 | <a class="help" href="#regulation"><img align="right" src="/static/images/help.png" /></a> |
4 | <h5> Regulation information for {{ gene }} </h5> <span class="search_help">(Mouseover regulator name to see its description)</span> |
5 | <p> |
6 | <div class="tab-contents"> |
7 | <script type="text/javascript"> |
8 | $(document).ready(function() { |
9 | {{ influence_biclusters|influences_to_gene_description_map }} ; |
10 | $('.reggene').on('mouseover', function(event) { |
11 | var geneName = $(this).html(); |
12 | $(this).qtip({ |
13 | prerender: true, |
14 | content: descriptionMap[geneName] |
15 | }, event); |
16 | }); |
17 | }); |
18 | </script> |
19 |
/usr/lib/python2.7/site-packages/django/core/handlers/base.py
in get_response
response = middleware_method(request, callback, callback_args, callback_kwargs)
if response:
break
if response is None:
wrapped_callback = self.make_view_atomic(callback)
try:
response = wrapped_callback(request, *callback_args, **callback_kwargs)...
except Exception as e:
# If the view raised an exception, run it through exception
# middleware, and if the exception middleware returns a
# response, use that. Otherwise, reraise the exception.
for middleware_method in self._exception_middleware:
response = middleware_method(request, e)
Variable | Value |
---|---|
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
callback_args | () |
resolver_match | ResolverMatch(func=networks.views.gene, args=(), kwargs={'gene': u'GSU1270', 'species': u'gsu'}, url_name=gene, app_name=None, namespaces=[]) |
middleware_method | <bound method CsrfViewMiddleware.process_view of <django.middleware.csrf.CsrfViewMiddleware object at 0x7f128c42c610>> |
self | <django.core.handlers.wsgi.WSGIHandler object at 0x7f12d81c9f10> |
request | "<WSGIRequest\npath:/gsu/gene/GSU1270,\nGET:<QueryDict: {}>,\nPOST:<QueryDict: {}>,\nCOOKIES:{},\nMETA:{'CONTEXT_DOCUMENT_ROOT': '/local/apache-stuff/network_portal',\n 'CONTEXT_PREFIX': '',\n u'CSRF_COOKIE': u'jNqmIRrICtIX1U1c0vxmf4wosGgjTehX',\n 'DOCUMENT_ROOT': '/local/apache-stuff/network_portal',\n 'GATEWAY_INTERFACE': 'CGI/1.1',\n 'HTTP_ACCEPT': '*/*',\n 'HTTP_CONNECTION': 'close',\n 'HTTP_HOST': 'networks.systemsbiology.net',\n 'HTTP_REFERER': 'http://networks.systemsbiology.net/gsu/gene/GSU1270',\n 'HTTP_USER_AGENT': 'claudebot',\n 'HTTP_X_FORWARDED_FOR': '34.204.181.19',\n 'HTTP_X_FORWARDED_PROTO': 'https',\n 'HTTP_X_REAL_IP': '34.204.181.19',\n 'PATH_INFO': u'/gsu/gene/GSU1270',\n 'PATH_TRANSLATED': '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py/gsu/gene/GSU1270',\n 'QUERY_STRING': '',\n 'REMOTE_ADDR': '10.3.0.181',\n 'REMOTE_PORT': '41746',\n 'REQUEST_METHOD': 'GET',\n 'REQUEST_SCHEME': 'https',\n 'REQUEST_URI': '/gsu/gene/GSU1270',\n 'SCRIPT_FILENAME': '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py',\n 'SCRIPT_NAME': u'',\n 'SERVER_ADDR': '10.2.8.50',\n 'SERVER_ADMIN': 'root@localhost',\n 'SERVER_NAME': 'networks.systemsbiology.net',\n 'SERVER_PORT': '443',\n 'SERVER_PROTOCOL': 'HTTP/1.1',\n 'SERVER_SIGNATURE': '',\n 'SERVER_SOFTWARE': 'Apache',\n 'UNIQUE_ID': 'ZfjztR0dab0FJsU8VL5yEgAAAAA',\n 'mod_wsgi.application_group': '',\n 'mod_wsgi.callable_object': 'application',\n 'mod_wsgi.enable_sendfile': '0',\n 'mod_wsgi.handler_script': '',\n 'mod_wsgi.input_chunked': '0',\n 'mod_wsgi.listener_host': '',\n 'mod_wsgi.listener_port': '443',\n 'mod_wsgi.process_group': 'networks-ssl',\n 'mod_wsgi.queue_start': '1710814133976478',\n 'mod_wsgi.request_handler': 'wsgi-script',\n 'mod_wsgi.script_reloading': '1',\n 'mod_wsgi.version': (3, 4),\n 'wsgi.errors': <mod_wsgi.Log object at 0x7f1284645f30>,\n 'wsgi.file_wrapper': <built-in method file_wrapper of mod_wsgi.Adapter object at 0x7f12844e2828>,\n 'wsgi.input': <mod_wsgi.Input object at 0x7f1284645bf0>,\n 'wsgi.multiprocess': True,\n 'wsgi.multithread': True,\n 'wsgi.run_once': False,\n 'wsgi.url_scheme': 'https',\n 'wsgi.version': (1, 0)}>" |
callback | <function gene at 0x7f128c354c80> |
wrapped_callback | <function gene at 0x7f128c354c80> |
resolver | <RegexURLResolver 'nwportal.urls' (None:None) ^/> |
callback_kwargs | {'gene': u'GSU1270', 'species': u'gsu'} |
response | None |
urlconf | 'nwportal.urls' |
/local/apache-stuff/network_portal/web_app/networks/views.py
in gene
bicluster_pssms[motif_id] = pssm
if not preview_added:
preview_motifs.append(motif_id)
preview_added = True
motifs = all_motifs # used in template
preview_motifs = preview_motifs[:2] # restrict to 2 motifs on the front tab to improve load time
return render_to_response('gene.html', locals())...
# WW: these go into an embedded frame, so for security reasons make sure these are hosted
# on the same domain
SVG_MAP = {
'dvu': "/static/cmonkey_enigma/cmonkey_4.8.2_dvu_3491x739_11_Mar_02_17:37:51/svgs/",
'mmp': "/static/cmonkey_enigma/mmp/cmonkey_4.8.8_mmp_1661x58_11_Oct_11_16:14:07/svgs/",
Variable | Value |
---|---|
all_motifs | [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>] |
influence_biclusters | [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)] |
count_regulated_biclusters | 11L |
motif_id | 2759 |
species | <Species: Geobacter sulfurreducens> |
pssms | {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]} |
functions | [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>] |
network | <Network: Geobacter_sulfurreducens network> |
system | {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'} |
preview_motifs | [2722, 2758] |
systems | [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}] |
motifs | [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>] |
neighbor_genes | [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0595>, <Gene: GSU0841>, <Gene: GSU0890>, <Gene: GSU1019>, <Gene: GSU1034>, <Gene: GSU1109>, <Gene: GSU1172>, <Gene: GSU1270>, <Gene: GSU1272>, <Gene: GSU1329>, <Gene: GSU1383>, <Gene: GSU1405>, <Gene: GSU1539>, <Gene: GSU1565>, <Gene: GSU1574>, <Gene: GSU1680>, <Gene: GSU1703>, <Gene: GSU2001>, <Gene: GSU2080>, <Gene: GSU2103>, <Gene: GSU2166>, <Gene: GSU2204>, <Gene: GSU2205>, <Gene: GSU2336>, <Gene: GSU2350>, <Gene: GSU2363>, <Gene: GSU2411>, <Gene: GSU2418>, <Gene: GSU2578>, <Gene: GSU2592>, <Gene: GSU2593>, <Gene: GSU2594>, <Gene: GSU2716>, <Gene: GSU2890>, <Gene: GSU2957>, <Gene: GSU2989>, <Gene: GSU2997>, <Gene: GSU3184>, <Gene: GSU3186>, <Gene: GSU3264>, <Gene: GSU3276>, <Gene: GSU3286>, <Gene: GSU3411>] |
function | <Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog> |
member_biclusters | [<Bicluster: Bicluster 281>, <Bicluster: Bicluster 300>] |
STATIC_PREFIX | '/static/' |
key | u'cog' |
bicluster_pssms | {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]], 2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]} |
pssm | [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]] |
network_id | 6 |
regulated_biclusters | [<Bicluster: Bicluster 39>, <Bicluster: Bicluster 64>, <Bicluster: Bicluster 72>, <Bicluster: Bicluster 101>, <Bicluster: Bicluster 114>, <Bicluster: Bicluster 123>, <Bicluster: Bicluster 214>, <Bicluster: Bicluster 280>, <Bicluster: Bicluster 281>, <Bicluster: Bicluster 300>, <Bicluster: Bicluster 305>] |
request | "<WSGIRequest\npath:/gsu/gene/GSU1270,\nGET:<QueryDict: {}>,\nPOST:<QueryDict: {}>,\nCOOKIES:{},\nMETA:{'CONTEXT_DOCUMENT_ROOT': '/local/apache-stuff/network_portal',\n 'CONTEXT_PREFIX': '',\n u'CSRF_COOKIE': u'jNqmIRrICtIX1U1c0vxmf4wosGgjTehX',\n 'DOCUMENT_ROOT': '/local/apache-stuff/network_portal',\n 'GATEWAY_INTERFACE': 'CGI/1.1',\n 'HTTP_ACCEPT': '*/*',\n 'HTTP_CONNECTION': 'close',\n 'HTTP_HOST': 'networks.systemsbiology.net',\n 'HTTP_REFERER': 'http://networks.systemsbiology.net/gsu/gene/GSU1270',\n 'HTTP_USER_AGENT': 'claudebot',\n 'HTTP_X_FORWARDED_FOR': '34.204.181.19',\n 'HTTP_X_FORWARDED_PROTO': 'https',\n 'HTTP_X_REAL_IP': '34.204.181.19',\n 'PATH_INFO': u'/gsu/gene/GSU1270',\n 'PATH_TRANSLATED': '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py/gsu/gene/GSU1270',\n 'QUERY_STRING': '',\n 'REMOTE_ADDR': '10.3.0.181',\n 'REMOTE_PORT': '41746',\n 'REQUEST_METHOD': 'GET',\n 'REQUEST_SCHEME': 'https',\n 'REQUEST_URI': '/gsu/gene/GSU1270',\n 'SCRIPT_FILENAME': '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py',\n 'SCRIPT_NAME': u'',\n 'SERVER_ADDR': '10.2.8.50',\n 'SERVER_ADMIN': 'root@localhost',\n 'SERVER_NAME': 'networks.systemsbiology.net',\n 'SERVER_PORT': '443',\n 'SERVER_PROTOCOL': 'HTTP/1.1',\n 'SERVER_SIGNATURE': '',\n 'SERVER_SOFTWARE': 'Apache',\n 'UNIQUE_ID': 'ZfjztR0dab0FJsU8VL5yEgAAAAA',\n 'mod_wsgi.application_group': '',\n 'mod_wsgi.callable_object': 'application',\n 'mod_wsgi.enable_sendfile': '0',\n 'mod_wsgi.handler_script': '',\n 'mod_wsgi.input_chunked': '0',\n 'mod_wsgi.listener_host': '',\n 'mod_wsgi.listener_port': '443',\n 'mod_wsgi.process_group': 'networks-ssl',\n 'mod_wsgi.queue_start': '1710814133976478',\n 'mod_wsgi.request_handler': 'wsgi-script',\n 'mod_wsgi.script_reloading': '1',\n 'mod_wsgi.version': (3, 4),\n 'wsgi.errors': <mod_wsgi.Log object at 0x7f1284645f30>,\n 'wsgi.file_wrapper': <built-in method file_wrapper of mod_wsgi.Adapter object at 0x7f12844e2828>,\n 'wsgi.input': <mod_wsgi.Input object at 0x7f1284645bf0>,\n 'wsgi.multiprocess': True,\n 'wsgi.multithread': True,\n 'wsgi.run_once': False,\n 'wsgi.url_scheme': 'https',\n 'wsgi.version': (1, 0)}>" |
mbicl | <Bicluster: Bicluster 300> |
gene | <Gene: GSU1270> |
preview_added | True |
view | '' |
/usr/lib/python2.7/site-packages/django/shortcuts.py
in render_to_response
Returns a HttpResponse whose content is filled with the result of calling
django.template.loader.render_to_string() with the passed arguments.
"""
if (context_instance is _context_instance_undefined
and dirs is _dirs_undefined
and dictionary is _dictionary_undefined):
# No deprecated arguments were passed - use the new code path
content = loader.render_to_string(template_name, context, using=using)...
else:
# Some deprecated arguments were passed - use the legacy code path
content = loader.render_to_string(
template_name, context, context_instance, dirs, dictionary,
using=using)
Variable | Value |
---|---|
dirs | <object object at 0x7f12d82db690> |
status | None |
content_type | None |
dictionary | <object object at 0x7f12d82db680> |
template_name | 'gene.html' |
context_instance | <object object at 0x7f12d82db670> |
context | {u'STATIC_PREFIX': '/static/', 'all_motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'bicluster_pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]], 2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], ... <trimmed 13210 bytes string> |
using | None |
/usr/lib/python2.7/site-packages/django/template/loader.py
in render_to_string
and dirs is _dirs_undefined
and dictionary is _dictionary_undefined):
# No deprecated arguments were passed - use the new code path
if isinstance(template_name, (list, tuple)):
template = select_template(template_name, using=using)
else:
template = get_template(template_name, using=using)
return template.render(context, request)...
else:
# Some deprecated arguments were passed - use the legacy code path
for engine in _engine_list(using):
try:
# This is required for deprecating properly arguments specific
Variable | Value |
---|---|
dirs | <object object at 0x7f12d82db690> |
template | <django.template.backends.django.Template object at 0x7f127fb7de90> |
dictionary | <object object at 0x7f12d82db680> |
template_name | 'gene.html' |
request | None |
context_instance | <object object at 0x7f12d82db670> |
context | {u'STATIC_PREFIX': '/static/', 'all_motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'bicluster_pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]], 2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], ... <trimmed 13210 bytes string> |
using | None |
/usr/lib/python2.7/site-packages/django/template/backends/django.py
in render
warnings.warn(
"render() must be called with a dict, not a Context.",
RemovedInDjango110Warning, stacklevel=2)
else:
context = make_context(context, request)
return self.template.render(context)...
Variable | Value |
---|---|
self | <django.template.backends.django.Template object at 0x7f127fb7de90> |
request | None |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
def render(self, context):
"Display stage -- can be called many times"
context.render_context.push()
try:
if context.template is None:
with context.bind_template(self):
return self._render(context)...
else:
return self._render(context)
finally:
context.render_context.pop()
Variable | Value |
---|---|
self | <django.template.base.Template object at 0x7f127fb7d5d0> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in _render
def __iter__(self):
for node in self.nodelist:
for subnode in node:
yield subnode
def _render(self, context):
return self.nodelist.render(context)...
def render(self, context):
"Display stage -- can be called many times"
context.render_context.push()
try:
if context.template is None:
Variable | Value |
---|---|
self | <django.template.base.Template object at 0x7f127fb7d5d0> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
# extend_nodelist().
contains_nontext = False
def render(self, context):
bits = []
for node in self:
if isinstance(node, Node):
bit = self.render_node(node, context)...
else:
bit = node
bits.append(force_text(bit))
return mark_safe(''.join(bits))
def get_nodes_by_type(self, nodetype):
Variable | Value |
---|---|
node | <ExtendsNode: extends "base2.html"> |
self | [<ExtendsNode: extends "base2.html">] |
bits | [] |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
/usr/lib/python2.7/site-packages/django/template/debug.py
in render_node
if not hasattr(e, 'django_template_source'):
e.django_template_source = token.source
class DebugNodeList(NodeList):
def render_node(self, node, context):
try:
return node.render(context)...
except Exception as e:
if not hasattr(e, 'django_template_source'):
e.django_template_source = node.source
raise
Variable | Value |
---|---|
node | <ExtendsNode: extends "base2.html"> |
self | [<ExtendsNode: extends "base2.html">] |
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
/usr/lib/python2.7/site-packages/django/template/loader_tags.py
in render
blocks = {n.name: n for n in
compiled_parent.nodelist.get_nodes_by_type(BlockNode)}
block_context.add_blocks(blocks)
break
# Call Template._render explicitly so the parser context stays
# the same.
return compiled_parent._render(context)...
class IncludeNode(Node):
def __init__(self, template, *args, **kwargs):
self.template = template
self.extra_context = kwargs.pop('extra_context', {})
Variable | Value |
---|---|
node | <django.template.defaulttags.LoadNode object at 0x7f1284516090> |
blocks | {u'basewrap': <Block Node: basewrap. Contents: [<Text Node: '<div id="wrap-no-line">'>]>, u'content': <Block Node: content. Contents: []>, u'csscommon': <Block Node: csscommon. Contents: [<Text Node: ' <link rel="styleshee'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/portal-style.'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/jquery.reject'>]>, u'cssreset': <Block Node: cssreset. Contents: []>, u'cssspecial': <Block Node: cssspecial. Contents: []>, u'footer': <Block Node: footer. Contents: [<Text Node: ' <!--<a href="ht'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/kbase-logo.jpg"></'>, <django.template.defaulttags.URLNode object at 0x7f1284516e90>, <Text Node: '">Development</a> '>, <django.template.defaulttags.URLNode object at 0x7f1284516310>, <Text Node: '">Home</a></p> '>]>, u'jscommon': <Block Node: jscommon. Contents: [<Text Node: ' <!--<script type="te'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'cytoscapeweb/js/json2.min'>]>, u'jsspecial': <Block Node: jsspecial. Contents: []>, u'title': <Block Node: title. Contents: [<Text Node: 'Network Portal'>]>} |
block_context | <django.template.loader_tags.BlockContext object at 0x7f12846851d0> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
compiled_parent | <django.template.base.Template object at 0x7f12846854d0> |
self | <ExtendsNode: extends "base2.html"> |
/usr/lib/python2.7/site-packages/django/template/base.py
in _render
def __iter__(self):
for node in self.nodelist:
for subnode in node:
yield subnode
def _render(self, context):
return self.nodelist.render(context)...
def render(self, context):
"Display stage -- can be called many times"
context.render_context.push()
try:
if context.template is None:
Variable | Value |
---|---|
self | <django.template.base.Template object at 0x7f12846854d0> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
# extend_nodelist().
contains_nontext = False
def render(self, context):
bits = []
for node in self:
if isinstance(node, Node):
bit = self.render_node(node, context)...
else:
bit = node
bits.append(force_text(bit))
return mark_safe(''.join(bits))
def get_nodes_by_type(self, nodetype):
Variable | Value |
---|---|
node | <Block Node: content. Contents: []> |
bit | u'\n <div id="content">\n ' |
bits | [u'', u'', u'<!doctype html>\n<html>\n <head>\n <title>', u'Network Portal - Gene GSU1270', u'</title>\n ', u'\n<link rel="stylesheet" type="text/css" href="http://www.ncbi.nlm.nih.gov/core/extjs/ext-3.4.0/resources/css/ext-all.css" />\n<link rel="stylesheet" type="text/css" href="http://www.ncbi.nlm.nih.gov/core/extjs/ext-3.4.0/resources/css/xtheme-gray.css" id="theme" />\n<link rel="stylesheet" type="text/css" href="http://www.ncbi.nlm.nih.gov/coreweb/styles/ncbi_templates.css" />\n<!-- <link rel="stylesheet" type="text/css" href="http://www.ncbi.nlm.nih.gov/projects/sviewer/css/style.css" /> -->\n<link rel="stylesheet" href="http://code.jquery.com/ui/1.9.2/themes/redmond/jquery-ui.css" />\n', u'\n ', u'\n <link rel="stylesheet" href="/static/stylesheets/portal-style.css">\n <link rel="stylesheet" href="/static/stylesheets/jquery.reject.css">', u'\n <link href="', u'/static/', u'javascripts/jquery.qtip.min.css" rel="stylesheet" type="text/css" />\n ', u'<link href="http://cdn.wijmo.com/jquery.wijmo-open.1.5.0.css" rel="stylesheet" type="text/css" />\n<link rel="stylesheet" href="/static/stylesheets/colorbox.css" />\n<link href="/static/javascripts/jquery.qtip.min.css" rel="stylesheet" type="text/css" />', u'\n ', u'\n <!--<script type="text/javascript" src="http://code.jquery.com/jquery-latest.js"></script> -->\n <script src="http://ajax.googleapis.com/ajax/libs/jquery/1.10.2/jquery.js"></script>\n\n <script src="/static/javascripts/jquery-ui-1.11.2.custom/jquery-ui.min.js"></script>\n <link rel="stylesheet" href="/static/javascripts/jquery-ui-1.11.2.custom/jquery-ui.min.css">\n <script type="text/javascript" src="/static/cytoscapeweb/js/json2.min.js"></script>\n ', u'\n ', u'<script type="text/javascript" src="/static/cytoscapeweb/js/AC_OETags.min.js"></script>\n <script type="text/javascript" src="/static/cytoscapeweb/js/cytoscapeweb.min.js"></script>\n <script type="text/javascript" src="/static/javascripts/wwu_logo/isblogo.js"></script>\n <script type="text/javascript" src="/static/javascripts/network_helpers.js"></script>\n <script type="text/javascript" src="/static/javascripts/jquery.qtip.min.js"></script>\n <script type="text/javascript" src="http://cdn.wijmo.com/jquery.wijmo-open.1.5.0.min.js"></script>\n <script type="text/javascript" src="/static/javascripts/protovis.min.js"></script>\n <script type="text/javascript" src="/static/javascripts/visquick-min/vq.min.js"></script>\n <script type="text/javascript" src="/static/javascripts/visquick-min/vq.circvis.min.js"></script>\n <script type="text/javascript" src="/static/javascripts/visquick_helpers.js"></script>\n <script type=\'text/javascript\' src=\'/static/javascripts/jquery.colorbox.js\'></script>\n<!-- <script type="text/javascript" src="http://www.ncbi.nlm.nih.gov/core/extjs/ext-3.4.0/adapter/ext/ext-base.js"></script>\n <script type="text/javascript" src="http://www.ncbi.nlm.nih.gov/core/extjs/ext-3.4.0/ext-all.js"></script>\n <script type="text/javascript">window.sv_base_url = "/sviewer/"</script>-->\n<!-- These are required for loading NCBI sequence viewer in gene page -->\n<!--<script type="text/javascript" src="http://www.ncbi.nlm.nih.gov/projects/sviewer/js/main.js"/>-->\n ', u'\n <script type="text/javascript" src="', u'/static/', u'javascripts/main.js"></script>\n <script type="text/javascript" src="', u'/static/', u'javascripts/collapsing_divs.js"></script>\n <script type="text/javascript" src="', u'/static/', u'javascripts/jquery.tablesorter.min.js"></script>\n <script type="text/javascript" src="', u'/static/', u'javascripts/jquery.tablesorter.pager.js"></script>\n\t<script type="text/javascript" src="', u'/static/', u'javascripts/jquery.jcarousel.min.js"></script>\n <script type="text/javascript" src="', u'/static/', u'javascripts/jquery.qtip.min.js"></script>\n <script type="text/javascript" src="', u'/static/', u'javascripts/jquery.reject.min.js"></script>\n <!-- google analytics -->\n <script ty... <trimmed 7458 bytes string> |
self | [<django.template.defaulttags.LoadNode object at 0x7f1284516090>, <PrefixNode for 'STATIC_URL'>, <Text Node: '<!doctype html> <html> '>, <Block Node: title. Contents: [<Text Node: 'Network Portal'>]>, <Text Node: '</title> '>, <Block Node: cssreset. Contents: []>, <Text Node: ' '>, <Block Node: csscommon. Contents: [<Text Node: ' <link rel="styleshee'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/portal-style.'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/jquery.reject'>]>, <Text Node: ' <link href="'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.qtip.m'>, <Block Node: cssspecial. Contents: []>, <Text Node: ' '>, <Block Node: jscommon. Contents: [<Text Node: ' <!--<script type="te'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'cytoscapeweb/js/json2.min'>]>, <Text Node: ' '>, <Block Node: jsspecial. Contents: []>, <Text Node: ' <script type="text/j'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/main.js"></sc'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/collapsing_di'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.tables'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.tables'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.jcarou'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.qtip.m'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.reject'>, <Block Node: basewrap. Contents: [<Text Node: '<div id="wrap-no-line">'>]>, <Text Node: ' <div id="header"> '>, <django.template.defaulttags.URLNode object at 0x7f128420cf50>, <Text Node: '"><img alt="Logo" src="'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/logo-text.png"></a'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/isb_logo.png"></a>'>, <IfNode>, <Text Node: ' --> <li><a '>, <django.template.defaulttags.URLNode object at 0x7f128420c690>, <Text Node: '">About</a></li> <li><'>, <django.template.defaulttags.URLNode object at 0x7f128420cd10>, <Text Node: '">Contact</a></li> <li'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'apidocuments">API</a></li'>, <django.template.defaulttags.LoadNode object at 0x7f128420ca90>, <Text Node: ' <div id="nav"> '>, <django.template.base.SimpleNode object at 0x7f128420c4d0>, <Text Node: '"><a href="/">Home</a></l'>, <django.template.base.SimpleNode object at 0x7f128420c850>, <Text Node: '"><a href="/search">Searc'>, <django.template.base.SimpleNode object at 0x7f128420c710>, <Text Node: '"><a href="/species">Spec'>, <django.template.base.SimpleNode object at 0x7f128c287490>, <Text Node: '"><a href="/workspace">Wo'>, <IfNode>, <Text Node: ' <li class="'>, <django.template.base.SimpleNode object at 0x7f1284516810>, <Text Node: '"><a href="/help/" title='>, <django.template.base.SimpleNode object at 0x7f1284516450>, <Text Node: '"><a href="/analysis/gene'>, <Text Node: ' <div id="content">'>, <Block Node: content. Contents: []>, <Text Node: ' </div>'>, <Text Node: ' <div id="footer"> '>, <Block Node: footer. Contents: [<Text Node: ' <!--<a href="ht'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/kbase-logo.jpg"></'>, <django.template.defaulttags.URLNode object at 0x7f1284516e90>, <Text Node: '">Development</a> '>, <django.template.defaulttags.URLNode object at 0x7f1284516310>, <Text Node: '">Home</a></p> '>]>, <Text Node: ' </div>'>, <Text Node: ' <center> '>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/kbase-logo.jpg"></'>, <Text Node: ' </body> </html> '>] |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
/usr/lib/python2.7/site-packages/django/template/debug.py
in render_node
if not hasattr(e, 'django_template_source'):
e.django_template_source = token.source
class DebugNodeList(NodeList):
def render_node(self, node, context):
try:
return node.render(context)...
except Exception as e:
if not hasattr(e, 'django_template_source'):
e.django_template_source = node.source
raise
Variable | Value |
---|---|
node | <Block Node: content. Contents: []> |
self | [<django.template.defaulttags.LoadNode object at 0x7f1284516090>, <PrefixNode for 'STATIC_URL'>, <Text Node: '<!doctype html> <html> '>, <Block Node: title. Contents: [<Text Node: 'Network Portal'>]>, <Text Node: '</title> '>, <Block Node: cssreset. Contents: []>, <Text Node: ' '>, <Block Node: csscommon. Contents: [<Text Node: ' <link rel="styleshee'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/portal-style.'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/jquery.reject'>]>, <Text Node: ' <link href="'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.qtip.m'>, <Block Node: cssspecial. Contents: []>, <Text Node: ' '>, <Block Node: jscommon. Contents: [<Text Node: ' <!--<script type="te'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'cytoscapeweb/js/json2.min'>]>, <Text Node: ' '>, <Block Node: jsspecial. Contents: []>, <Text Node: ' <script type="text/j'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/main.js"></sc'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/collapsing_di'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.tables'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.tables'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.jcarou'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.qtip.m'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.reject'>, <Block Node: basewrap. Contents: [<Text Node: '<div id="wrap-no-line">'>]>, <Text Node: ' <div id="header"> '>, <django.template.defaulttags.URLNode object at 0x7f128420cf50>, <Text Node: '"><img alt="Logo" src="'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/logo-text.png"></a'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/isb_logo.png"></a>'>, <IfNode>, <Text Node: ' --> <li><a '>, <django.template.defaulttags.URLNode object at 0x7f128420c690>, <Text Node: '">About</a></li> <li><'>, <django.template.defaulttags.URLNode object at 0x7f128420cd10>, <Text Node: '">Contact</a></li> <li'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'apidocuments">API</a></li'>, <django.template.defaulttags.LoadNode object at 0x7f128420ca90>, <Text Node: ' <div id="nav"> '>, <django.template.base.SimpleNode object at 0x7f128420c4d0>, <Text Node: '"><a href="/">Home</a></l'>, <django.template.base.SimpleNode object at 0x7f128420c850>, <Text Node: '"><a href="/search">Searc'>, <django.template.base.SimpleNode object at 0x7f128420c710>, <Text Node: '"><a href="/species">Spec'>, <django.template.base.SimpleNode object at 0x7f128c287490>, <Text Node: '"><a href="/workspace">Wo'>, <IfNode>, <Text Node: ' <li class="'>, <django.template.base.SimpleNode object at 0x7f1284516810>, <Text Node: '"><a href="/help/" title='>, <django.template.base.SimpleNode object at 0x7f1284516450>, <Text Node: '"><a href="/analysis/gene'>, <Text Node: ' <div id="content">'>, <Block Node: content. Contents: []>, <Text Node: ' </div>'>, <Text Node: ' <div id="footer"> '>, <Block Node: footer. Contents: [<Text Node: ' <!--<a href="ht'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/kbase-logo.jpg"></'>, <django.template.defaulttags.URLNode object at 0x7f1284516e90>, <Text Node: '">Development</a> '>, <django.template.defaulttags.URLNode object at 0x7f1284516310>, <Text Node: '">Home</a></p> '>]>, <Text Node: ' </div>'>, <Text Node: ' <center> '>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/kbase-logo.jpg"></'>, <Text Node: ' </body> </html> '>] |
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
/usr/lib/python2.7/site-packages/django/template/loader_tags.py
in render
push = block = block_context.pop(self.name)
if block is None:
block = self
# Create new block so we can store context without thread-safety issues.
block = type(self)(block.name, block.nodelist)
block.context = context
context['block'] = block
result = block.nodelist.render(context)...
if push is not None:
block_context.push(self.name, push)
return result
def super(self):
if not hasattr(self, 'context'):
Variable | Value |
---|---|
push | <Block Node: content. Contents: [<Text Node: ' <h5><span class="search_'>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a> '>, <For Node: for network in species.network_set.all, tail_len: 5>, <Text Node: ' </span> </h5> <div id'>, <Variable Node: gene.name>, <Text Node: '</a></li> <li><a cl'>, <Text Node: ' <li><a class="gene'>, <Variable Node: bicluster_pssms>, <Text Node: '; $(document).'>, <Variable Node: gene.bicluster_set.count>, <Text Node: ', "'>, <Variable Node: gene.name>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f12845e7510>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f12845e7b10>, <Text Node: '", '>, <IfNode>, <Text Node: ' var circle'>, <Variable Node: gene.name>, <Text Node: '', succ'>, <Variable Node: preview_motifs>, <Text Node: '); '>, <Variable Node: gene.display_name>, <Text Node: '</h5> <p><span '>, <Variable Node: gene.description>, <Text Node: '</span></p> <d'>, <Variable Node: gene.functions.count>, <Text Node: ')</h5> '>, <IfNode>, <Text Node: ' <!-- <h3'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>, <Text Node: ' </div> <div id='>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a><br/> <st'>, <Variable Node: gene.name>, <Text Node: ' <br/> <stron'>, <Variable Node: gene.geneid>, <Text Node: '">'>, <Variable Node: gene.geneid>, <Text Node: ' (NCBI) </a>, <a href="ht'>, <Variable Node: gene.name>, <Text Node: '">'>, <Variable Node: gene.name>, <Text Node: ' (MicrobesOnline) </a><br'>, <IfNode>, <Text Node: '</i><br/> <h5'>, <IfNode>, <Text Node: ' </table> '>, <IfNode>, <Text Node: '--> </div>'>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127fb64b90>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127fb64e10>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127fb64110>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127fb64cd0>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f128435d410>, <Text Node: ' </div> <!-- '>, <django.template.loader_tags.IncludeNode object at 0x7f128c455610>, <Text Node: ' </div> <div '>, <Variable Node: gene.name>, <Text Node: ' </h5> Please add y'>, <Text Node: ' </div>'>, <Text Node: ' <div style="display:n'>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f12846853d0>, <Text Node: '" align="right"><br> <u'>, <Text Node: ' '>]> |
block_context | <django.template.loader_tags.BlockContext object at 0x7f12846851d0> |
block | <Block Node: content. Contents: [<Text Node: ' <h5><span class="search_'>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a> '>, <For Node: for network in species.network_set.all, tail_len: 5>, <Text Node: ' </span> </h5> <div id'>, <Variable Node: gene.name>, <Text Node: '</a></li> <li><a cl'>, <Text Node: ' <li><a class="gene'>, <Variable Node: bicluster_pssms>, <Text Node: '; $(document).'>, <Variable Node: gene.bicluster_set.count>, <Text Node: ', "'>, <Variable Node: gene.name>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f12845e7510>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f12845e7b10>, <Text Node: '", '>, <IfNode>, <Text Node: ' var circle'>, <Variable Node: gene.name>, <Text Node: '', succ'>, <Variable Node: preview_motifs>, <Text Node: '); '>, <Variable Node: gene.display_name>, <Text Node: '</h5> <p><span '>, <Variable Node: gene.description>, <Text Node: '</span></p> <d'>, <Variable Node: gene.functions.count>, <Text Node: ')</h5> '>, <IfNode>, <Text Node: ' <!-- <h3'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>, <Text Node: ' </div> <div id='>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a><br/> <st'>, <Variable Node: gene.name>, <Text Node: ' <br/> <stron'>, <Variable Node: gene.geneid>, <Text Node: '">'>, <Variable Node: gene.geneid>, <Text Node: ' (NCBI) </a>, <a href="ht'>, <Variable Node: gene.name>, <Text Node: '">'>, <Variable Node: gene.name>, <Text Node: ' (MicrobesOnline) </a><br'>, <IfNode>, <Text Node: '</i><br/> <h5'>, <IfNode>, <Text Node: ' </table> '>, <IfNode>, <Text Node: '--> </div>'>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127fb64b90>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127fb64e10>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127fb64110>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127fb64cd0>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f128435d410>, <Text Node: ' </div> <!-- '>, <django.template.loader_tags.IncludeNode object at 0x7f128c455610>, <Text Node: ' </div> <div '>, <Variable Node: gene.name>, <Text Node: ' </h5> Please add y'>, <Text Node: ' </div>'>, <Text Node: ' <div style="display:n'>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f12846853d0>, <Text Node: '" align="right"><br> <u'>, <Text Node: ' '>]> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
self | <Block Node: content. Contents: []> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
# extend_nodelist().
contains_nontext = False
def render(self, context):
bits = []
for node in self:
if isinstance(node, Node):
bit = self.render_node(node, context)...
else:
bit = node
bits.append(force_text(bit))
return mark_safe(''.join(bits))
def get_nodes_by_type(self, nodetype):
Variable | Value |
---|---|
node | <django.template.loader_tags.IncludeNode object at 0x7f127fb64e10> |
bit | u'\n </div>\n <div id="tab-regulator" class="sub-page">\n ' |
bits | [u'\n<h5><span class="search_help"> Organism : <a href="/', u'gsu', u'">', u'Geobacter sulfurreducens', u'</a>\n | Module List : ', u'\n \t\t\t\t <a href="/gsu/network/1" title="Explore Network"><img align="center" src="/static/images/network.gif"/></a></a>\n \t\t\t\t\t', u'\n </span>\n</h5>\n<div id="bicluster-top">\n <div class="sub-page">\n <div id="tabs" class="sub-page">\n <ul>\n\t <li><a class="name" href="#tab-main">', u'GSU1270', u'</a></li>\n\t <li><a class="network" href="#tab-network">Network</a></li>\n\t <li><a class="regulator" href="#tab-regulator">Regulation</a></li>\n\t <li><a class="motif" href="#tab-motif">Motifs</a></li>\n\t <li><a class="function" href="#tab-function">Functions</a></li>\n\t <li><a class="genes" href="#tab-gene">Module Members</a></li>\n\t ', u'\n\t <li><a class="gene-help" href="#tab-help">Help</a></li>\n\t <li><a class="social" href="#tab-social">Social</a></li>\n </ul>\n <div id="tab-main">\n\t\t <div class="main">\n <script type="text/javascript">\n var django_pssms = ', u'{2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]], 2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}', u';\n $(document).ready(function() {\n var loaded = [false, false, false, false, false, false, false, false];\n $(\'#tabs\').tabs({\n // load network and motif tabs on demand\n activate: function (event, ui) {\n var index = $(\'#tabs\').tabs("option", "active");\n if (!loaded[index]) {\n switch (index) {\n case 1:\n var vis = nwhelpers.initNetworkTab(', u'2', u', "', u'GSU1270', u'",\n "', u'/static/cytoscapeweb/swf/CytoscapeWeb', u'",\n "', u'/static/cytoscapeweb/swf/playerProductInstall', u'",\n nwhelpers.load_popup);\n break;\n case 3:\n setTimeout(function() {\n nwhelpers.initCanvas(d... <trimmed 9856 bytes string> |
self | [<Text Node: ' <h5><span class="search_'>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a> '>, <For Node: for network in species.network_set.all, tail_len: 5>, <Text Node: ' </span> </h5> <div id'>, <Variable Node: gene.name>, <Text Node: '</a></li> <li><a cl'>, <Text Node: ' <li><a class="gene'>, <Variable Node: bicluster_pssms>, <Text Node: '; $(document).'>, <Variable Node: gene.bicluster_set.count>, <Text Node: ', "'>, <Variable Node: gene.name>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f12845e7510>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f12845e7b10>, <Text Node: '", '>, <IfNode>, <Text Node: ' var circle'>, <Variable Node: gene.name>, <Text Node: '', succ'>, <Variable Node: preview_motifs>, <Text Node: '); '>, <Variable Node: gene.display_name>, <Text Node: '</h5> <p><span '>, <Variable Node: gene.description>, <Text Node: '</span></p> <d'>, <Variable Node: gene.functions.count>, <Text Node: ')</h5> '>, <IfNode>, <Text Node: ' <!-- <h3'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>, <Text Node: ' </div> <div id='>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a><br/> <st'>, <Variable Node: gene.name>, <Text Node: ' <br/> <stron'>, <Variable Node: gene.geneid>, <Text Node: '">'>, <Variable Node: gene.geneid>, <Text Node: ' (NCBI) </a>, <a href="ht'>, <Variable Node: gene.name>, <Text Node: '">'>, <Variable Node: gene.name>, <Text Node: ' (MicrobesOnline) </a><br'>, <IfNode>, <Text Node: '</i><br/> <h5'>, <IfNode>, <Text Node: ' </table> '>, <IfNode>, <Text Node: '--> </div>'>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127fb64b90>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127fb64e10>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127fb64110>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127fb64cd0>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f128435d410>, <Text Node: ' </div> <!-- '>, <django.template.loader_tags.IncludeNode object at 0x7f128c455610>, <Text Node: ' </div> <div '>, <Variable Node: gene.name>, <Text Node: ' </h5> Please add y'>, <Text Node: ' </div>'>, <Text Node: ' <div style="display:n'>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f12846853d0>, <Text Node: '" align="right"><br> <u'>, <Text Node: ' '>] |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
/usr/lib/python2.7/site-packages/django/template/debug.py
in render_node
if not hasattr(e, 'django_template_source'):
e.django_template_source = token.source
class DebugNodeList(NodeList):
def render_node(self, node, context):
try:
return node.render(context)...
except Exception as e:
if not hasattr(e, 'django_template_source'):
e.django_template_source = node.source
raise
Variable | Value |
---|---|
node | <django.template.loader_tags.IncludeNode object at 0x7f127fb64e10> |
self | [<Text Node: ' <h5><span class="search_'>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a> '>, <For Node: for network in species.network_set.all, tail_len: 5>, <Text Node: ' </span> </h5> <div id'>, <Variable Node: gene.name>, <Text Node: '</a></li> <li><a cl'>, <Text Node: ' <li><a class="gene'>, <Variable Node: bicluster_pssms>, <Text Node: '; $(document).'>, <Variable Node: gene.bicluster_set.count>, <Text Node: ', "'>, <Variable Node: gene.name>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f12845e7510>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f12845e7b10>, <Text Node: '", '>, <IfNode>, <Text Node: ' var circle'>, <Variable Node: gene.name>, <Text Node: '', succ'>, <Variable Node: preview_motifs>, <Text Node: '); '>, <Variable Node: gene.display_name>, <Text Node: '</h5> <p><span '>, <Variable Node: gene.description>, <Text Node: '</span></p> <d'>, <Variable Node: gene.functions.count>, <Text Node: ')</h5> '>, <IfNode>, <Text Node: ' <!-- <h3'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>, <Text Node: ' </div> <div id='>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a><br/> <st'>, <Variable Node: gene.name>, <Text Node: ' <br/> <stron'>, <Variable Node: gene.geneid>, <Text Node: '">'>, <Variable Node: gene.geneid>, <Text Node: ' (NCBI) </a>, <a href="ht'>, <Variable Node: gene.name>, <Text Node: '">'>, <Variable Node: gene.name>, <Text Node: ' (MicrobesOnline) </a><br'>, <IfNode>, <Text Node: '</i><br/> <h5'>, <IfNode>, <Text Node: ' </table> '>, <IfNode>, <Text Node: '--> </div>'>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127fb64b90>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127fb64e10>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127fb64110>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127fb64cd0>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f128435d410>, <Text Node: ' </div> <!-- '>, <django.template.loader_tags.IncludeNode object at 0x7f128c455610>, <Text Node: ' </div> <div '>, <Variable Node: gene.name>, <Text Node: ' </h5> Please add y'>, <Text Node: ' </div>'>, <Text Node: ' <div style="display:n'>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f12846853d0>, <Text Node: '" align="right"><br> <u'>, <Text Node: ' '>] |
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
/usr/lib/python2.7/site-packages/django/template/loader_tags.py
in render
values = {
name: var.resolve(context)
for name, var in six.iteritems(self.extra_context)
}
if self.isolated_context:
return template.render(context.new(values))
with context.push(**values):
return template.render(context)...
except Exception:
if context.template.engine.debug:
raise
return ''
Variable | Value |
---|---|
self | <django.template.loader_tags.IncludeNode object at 0x7f127fb64e10> |
values | {} |
template | <django.template.base.Template object at 0x7f127d6a6b90> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
"Display stage -- can be called many times"
context.render_context.push()
try:
if context.template is None:
with context.bind_template(self):
return self._render(context)
else:
return self._render(context)...
finally:
context.render_context.pop()
class Token(object):
def __init__(self, token_type, contents):
Variable | Value |
---|---|
self | <django.template.base.Template object at 0x7f127d6a6b90> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in _render
def __iter__(self):
for node in self.nodelist:
for subnode in node:
yield subnode
def _render(self, context):
return self.nodelist.render(context)...
def render(self, context):
"Display stage -- can be called many times"
context.render_context.push()
try:
if context.template is None:
Variable | Value |
---|---|
self | <django.template.base.Template object at 0x7f127d6a6b90> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
# extend_nodelist().
contains_nontext = False
def render(self, context):
bits = []
for node in self:
if isinstance(node, Node):
bit = self.render_node(node, context)...
else:
bit = node
bits.append(force_text(bit))
return mark_safe(''.join(bits))
def get_nodes_by_type(self, nodetype):
Variable | Value |
---|---|
node | <Variable Node: influence_biclusters|influences_to_gene_description_map> |
bit | u' </h5> <span class="search_help">(Mouseover regulator name to see its description)</span> \n<p>\n<div class="tab-contents">\n <script type="text/javascript">\n $(document).ready(function() {\n ' |
bits | [u'', u'\n', u'', u'\n<a class="help" href="#regulation"><img align="right" src="/static/images/help.png" /></a>\n<h5> Regulation information for ', u'GSU1270', u' </h5> <span class="search_help">(Mouseover regulator name to see its description)</span> \n<p>\n<div class="tab-contents">\n <script type="text/javascript">\n $(document).ready(function() {\n '] |
self | [<django.template.defaulttags.LoadNode object at 0x7f1284430fd0>, <Text Node: ' '>, <django.template.defaulttags.LoadNode object at 0x7f127d6a6dd0>, <Text Node: ' <a class="help" href="#r'>, <Variable Node: gene>, <Text Node: ' </h5> <span class="searc'>, <Variable Node: influence_biclusters|influences_to_gene_description_map>, <Text Node: '; $('.reggene').o'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>] |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
/usr/lib/python2.7/site-packages/django/template/debug.py
in render_node
if not hasattr(e, 'django_template_source'):
e.django_template_source = token.source
class DebugNodeList(NodeList):
def render_node(self, node, context):
try:
return node.render(context)...
except Exception as e:
if not hasattr(e, 'django_template_source'):
e.django_template_source = node.source
raise
Variable | Value |
---|---|
node | <Variable Node: influence_biclusters|influences_to_gene_description_map> |
self | [<django.template.defaulttags.LoadNode object at 0x7f1284430fd0>, <Text Node: ' '>, <django.template.defaulttags.LoadNode object at 0x7f127d6a6dd0>, <Text Node: ' <a class="help" href="#r'>, <Variable Node: gene>, <Text Node: ' </h5> <span class="searc'>, <Variable Node: influence_biclusters|influences_to_gene_description_map>, <Text Node: '; $('.reggene').o'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>] |
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
/usr/lib/python2.7/site-packages/django/template/debug.py
in render
e.django_template_source = node.source
raise
class DebugVariableNode(VariableNode):
def render(self, context):
try:
output = self.filter_expression.resolve(context)...
output = template_localtime(output, use_tz=context.use_tz)
output = localize(output, use_l10n=context.use_l10n)
output = force_text(output)
except UnicodeDecodeError:
return ''
except Exception as e:
Variable | Value |
---|---|
self | <Variable Node: influence_biclusters|influences_to_gene_description_map> |
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in resolve
else:
arg_vals.append(arg.resolve(context))
if getattr(func, 'expects_localtime', False):
obj = template_localtime(obj, context.use_tz)
if getattr(func, 'needs_autoescape', False):
new_obj = func(obj, autoescape=context.autoescape, *arg_vals)
else:
new_obj = func(obj, *arg_vals)...
if getattr(func, 'is_safe', False) and isinstance(obj, SafeData):
obj = mark_safe(new_obj)
elif isinstance(obj, EscapeData):
obj = mark_for_escaping(new_obj)
else:
obj = new_obj
Variable | Value |
---|---|
obj | [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)] |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)], 'count_regulated_biclusters': 11L, 'motif_id': 2759, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2758: [[1.0, 0.0, 0.0, 0.0], [0.666667, 0.0, 0.0, 0.333333], [0.666667, 0.0, 0.111111, 0.222222], [0.111111, 0.0, 0.888889, 0.0], [0.0, 0.444444, 0.555556, 0.0], [0.136248, 0.14153, 0.025137, 0.697085], [0.580693, 0.252641, 0.025137, 0.14153], [0.136248, 0.808196, 0.025137, 0.030419], [0.186522, 0.424589, 0.297633, 0.091256], [0.050274, 0.727504, 0.161385, 0.060837], [0.272496, 0.060837, 0.272496, 0.39417], [0.161385, 0.060837, 0.60583, 0.171948], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.222222, 0.0, 0.666667, 0.111111], [0.0, 0.0, 0.555556, 0.444444], [0.0, 0.777778, 0.111111, 0.111111], [0.111111, 0.555556, 0.0, 0.333333], [0.0, 0.0, 1.0, 0.0], [0.0, 0.888889, 0.0, 0.111111], [0.0, 0.0, 1.0, 0.0], [0.777778, 0.0, 0.222222, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.0, 1.0, 0.0, 0.0]], 2759: [[0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.8, 0.0, 0.0, 0.2], [0.2, 0.8, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.8, 0.2, 0.0], [0.0, 1.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.0, 1.0], [0.2, 0.0, 0.8, 0.0], [0.0, 1.0, 0.0, 0.0], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 0.2, 0.8], [0.0, 1.0, 0.0, 0.0], [0.0, 0.2, 0.8, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.2, 0.0, 0.8]]}, 'functions': [<Function: Function: COG2065, Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2722, 2758], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004845">GO:0004845</a>) uracil phosphoribosyltransferase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0009116">GO:0009116</a>) nucleoside metabolic process'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map00240">path:00240</a>) Pyrimidine metabolism', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map01100">path:01100</a>) Metabolic pathways'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG2065">COG2065</a>) Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0044>, <Gene: GSU0045>, <Gene: GSU0048>, <Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0223>, <Gene: GSU0369>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: ... <trimmed 8223 bytes string> |
arg_vals | [] |
self | <django.template.base.FilterExpression object at 0x7f127d6a6910> |
args | [] |
ignore_failures | False |
func | <function influences_to_gene_description_map at 0x7f128c27c140> |
/local/apache-stuff/network_portal/web_app/networks/templatetags/filters.py
in influences_to_gene_description_map
# note that parts might not be a gene - could be environmental factor
for part in influence.parts.all():
# print "part=%s" % (str(part),)
if part.gene:
gene_description_map[part.name] = part.gene.description.strip()
result = 'var descriptionMap = {}\n';
for key, description in gene_description_map.items():
result += 'descriptionMap[\'' + key + '\'] = "' + description + '";\n';...
#print "# descriptions: ", len(gene_description_map)
return mark_safe(result);
@register.filter
def motif1consensus(bicluster):
Variable | Value |
---|---|
description | None |
influence | <Influence: GSU3217> |
influence_biclusters | [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 300>, <Influence: GSU0164>), (<Bicluster: Bicluster 300>, <Influence: GSU1270>), (<Bicluster: Bicluster 300>, <Influence: GSU2202>), (<Bicluster: Bicluster 300>, <Influence: GSU2716>), (<Bicluster: Bicluster 300>, <Influence: GSU2779>), (<Bicluster: Bicluster 300>, <Influence: GSU3217>)] |
result | u'var descriptionMap = {}\ndescriptionMap[\'GSU0735\'] = "PTS system IIA component, fructose subfamily (VIMSS)";\ndescriptionMap[\'GSU0732\'] = "nucleoside diphosphate kinase regulator protein, putative (VIMSS)";\ndescriptionMap[\'GSU1989\'] = "sigma-54 dependent DNA-binding response regulator (VIMSS)";\ndescriptionMap[\'GSU0776\'] = "sigma-54 dependent DNA-binding response regulator (VIMSS)";\ndescriptionMap[\'GSU2779\'] = "transcriptional regulator, MerR family (VIMSS)";\ndescriptionMap[\'GSU0514\'] = "transcriptional regulator, IclR family (VIMSS)";\ndescriptionMap[\'GSU3217\'] = "sigma-54 dependent DNA-binding response regulator (VIMSS)";\ndescriptionMap[\'GSU1270\'] = "pyrimidine operon regulatory protein PyrR (NCBI)";\n' |
key | u'GSU1428' |
bicluster_id | <Bicluster: Bicluster 300> |
gene_description_map | {u'GSU0164': u'conserved hypothetical protein (VIMSS)', u'GSU0514': u'transcriptional regulator, IclR family (VIMSS)', u'GSU0625': u'hypothetical protein (VIMSS)', u'GSU0732': u'nucleoside diphosphate kinase regulator protein, putative (VIMSS)', u'GSU0735': u'PTS system IIA component, fructose subfamily (VIMSS)', u'GSU0776': u'sigma-54 dependent DNA-binding response regulator (VIMSS)', u'GSU0836': u'nucleoside diphosphate kinase regulator protein, putative (VIMSS)', u'GSU1072': u'transcriptional regulator, IclR family (VIMSS)', u'GSU1270': u'pyrimidine operon regulatory protein PyrR (NCBI)', u'GSU1428': None, u'GSU1989': u'sigma-54 dependent DNA-binding response regulator (VIMSS)', u'GSU2202': u'transcriptional regulator, LysR family (VIMSS)', u'GSU2716': u'sugar fermentation stimulation protein (NCBI)', u'GSU2779': u'transcriptional regulator, MerR family (VIMSS)', u'GSU3108': u'transcription termination factor Rho (NCBI)', u'GSU3217': u'sigma-54 dependent DNA-binding response regulator (VIMSS)'} |
No GET data
No POST data
No FILES data
No cookie data
Variable | Value |
---|---|
mod_wsgi.listener_port | '443' |
HTTP_REFERER | 'http://networks.systemsbiology.net/gsu/gene/GSU1270' |
CONTEXT_DOCUMENT_ROOT | '/local/apache-stuff/network_portal' |
SERVER_SOFTWARE | 'Apache' |
SCRIPT_NAME | u'' |
mod_wsgi.enable_sendfile | '0' |
mod_wsgi.handler_script | '' |
SERVER_SIGNATURE | '' |
REQUEST_METHOD | 'GET' |
PATH_INFO | u'/gsu/gene/GSU1270' |
SERVER_PROTOCOL | 'HTTP/1.1' |
QUERY_STRING | '' |
HTTP_X_REAL_IP | '34.204.181.19' |
HTTP_USER_AGENT | 'claudebot' |
HTTP_CONNECTION | 'close' |
SERVER_NAME | 'networks.systemsbiology.net' |
REMOTE_ADDR | '10.3.0.181' |
mod_wsgi.queue_start | '1710814133976478' |
mod_wsgi.request_handler | 'wsgi-script' |
wsgi.url_scheme | 'https' |
PATH_TRANSLATED | '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py/gsu/gene/GSU1270' |
SERVER_PORT | '443' |
wsgi.multiprocess | True |
mod_wsgi.input_chunked | '0' |
SERVER_ADDR | '10.2.8.50' |
DOCUMENT_ROOT | '/local/apache-stuff/network_portal' |
mod_wsgi.process_group | 'networks-ssl' |
HTTP_X_FORWARDED_PROTO | 'https' |
SCRIPT_FILENAME | '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py' |
SERVER_ADMIN | 'root@localhost' |
wsgi.input | <mod_wsgi.Input object at 0x7f1284645bf0> |
HTTP_HOST | 'networks.systemsbiology.net' |
CONTEXT_PREFIX | '' |
wsgi.multithread | True |
mod_wsgi.callable_object | 'application' |
REQUEST_URI | '/gsu/gene/GSU1270' |
HTTP_ACCEPT | '*/*' |
wsgi.version | (1, 0) |
GATEWAY_INTERFACE | 'CGI/1.1' |
HTTP_X_FORWARDED_FOR | '34.204.181.19' |
wsgi.errors | <mod_wsgi.Log object at 0x7f1284645f30> |
REMOTE_PORT | '41746' |
mod_wsgi.listener_host | '' |
REQUEST_SCHEME | 'https' |
mod_wsgi.version | (3, 4) |
wsgi.run_once | False |
mod_wsgi.application_group | '' |
mod_wsgi.script_reloading | '1' |
wsgi.file_wrapper | '' |
CSRF_COOKIE | u'jNqmIRrICtIX1U1c0vxmf4wosGgjTehX' |
UNIQUE_ID | 'ZfjztR0dab0FJsU8VL5yEgAAAAA' |
nwportal.settings.production
Setting | Value |
---|---|
SECURE_BROWSER_XSS_FILTER | False |
TIME_ZONE | 'America/Vancouver' |
CSRF_COOKIE_SECURE | False |
LANGUAGE_CODE | 'en-us' |
ROOT_URLCONF | 'nwportal.urls' |
MANAGERS | () |
KBASE_UJS_SERVICE_URL | 'https://kbase.us/services/userandjobstate' |
SILENCED_SYSTEM_CHECKS | [] |
DEFAULT_CHARSET | 'utf-8' |
SESSION_SERIALIZER | 'django.contrib.sessions.serializers.PickleSerializer' |
STATIC_ROOT | '/local/htdocs/nwportal' |
USERDATA_ROOT | '/local/nwportaluserdata' |
USE_THOUSAND_SEPARATOR | False |
ALLOWED_HOSTS | [] |
MESSAGE_STORAGE | 'django.contrib.messages.storage.fallback.FallbackStorage' |
EMAIL_SUBJECT_PREFIX | '[Django] ' |
SERVER_EMAIL | 'root@localhost' |
SECURE_HSTS_SECONDS | 0 |
STATICFILES_FINDERS | ('django.contrib.staticfiles.finders.FileSystemFinder', 'django.contrib.staticfiles.finders.AppDirectoriesFinder') |
SESSION_CACHE_ALIAS | 'default' |
SESSION_COOKIE_DOMAIN | None |
SESSION_COOKIE_NAME | 'sessionid' |
ORGANISM_SERVICE_HOST | 'http://condor:5000' |
TIME_INPUT_FORMATS | ('%H:%M:%S', '%H:%M:%S.%f', '%H:%M') |
SECURE_REDIRECT_EXEMPT | [] |
DATABASES | {'default': {'ATOMIC_REQUESTS': False, 'AUTOCOMMIT': True, 'CONN_MAX_AGE': 0, 'ENGINE': 'django.db.backends.postgresql_psycopg2', 'HOST': '', 'NAME': 'network_portal', 'OPTIONS': {}, 'PASSWORD': u'********************', 'PORT': '', 'TEST': {'CHARSET': None, 'COLLATION': None, 'MIRROR': None, 'NAME': None}, 'TIME_ZONE': 'UTC', 'USER': 'dj_ango'}} |
EMAIL_SSL_KEYFILE | u'********************' |
FILE_UPLOAD_DIRECTORY_PERMISSIONS | None |
FILE_UPLOAD_PERMISSIONS | None |
FILE_UPLOAD_HANDLERS | ('django.core.files.uploadhandler.MemoryFileUploadHandler', 'django.core.files.uploadhandler.TemporaryFileUploadHandler') |
TEMPLATE_CONTEXT_PROCESSORS | ('django.contrib.auth.context_processors.auth', 'django.core.context_processors.request', 'django.core.context_processors.static', 'django.core.context_processors.debug', 'django.contrib.messages.context_processors.messages') |
DEFAULT_CONTENT_TYPE | 'text/html' |
APPEND_SLASH | True |
FIRST_DAY_OF_WEEK | 0 |
DATABASE_ROUTERS | [] |
DEFAULT_TABLESPACE | '' |
YEAR_MONTH_FORMAT | 'F Y' |
STATICFILES_STORAGE | 'django.contrib.staticfiles.storage.StaticFilesStorage' |
CACHES | {'default': {'BACKEND': 'django.core.cache.backends.locmem.LocMemCache'}} |
SESSION_COOKIE_PATH | '/' |
SECURE_CONTENT_TYPE_NOSNIFF | False |
MIDDLEWARE_CLASSES | ('django.middleware.csrf.CsrfViewMiddleware', 'django.middleware.common.CommonMiddleware', 'django.contrib.sessions.middleware.SessionMiddleware', 'django.middleware.csrf.CsrfViewMiddleware', 'django.contrib.auth.middleware.AuthenticationMiddleware', 'django.contrib.messages.middleware.MessageMiddleware') |
KBASE_USER | '' |
THOUSAND_SEPARATOR | ',' |
SECRET_KEY | u'********************' |
LANGUAGE_COOKIE_NAME | 'django_language' |
DEFAULT_INDEX_TABLESPACE | '' |
LOGGING_CONFIG | 'logging.config.dictConfig' |
TEMPLATE_LOADERS | ('django.template.loaders.filesystem.Loader', 'django.template.loaders.app_directories.Loader') |
WSGI_APPLICATION | None |
TEMPLATE_DEBUG | True |
X_FRAME_OPTIONS | 'SAMEORIGIN' |
AUTHENTICATION_BACKENDS | ('social_core.backends.google.GoogleOAuth2', 'django.contrib.auth.backends.ModelBackend') |
SOCIAL_AUTH_GOOGLE_OAUTH2_SECRET | u'********************' |
FORCE_SCRIPT_NAME | None |
USE_X_FORWARDED_HOST | False |
EMAIL_TIMEOUT | None |
SECURE_SSL_HOST | None |
SIGNING_BACKEND | 'django.core.signing.TimestampSigner' |
SESSION_COOKIE_SECURE | False |
CSRF_COOKIE_DOMAIN | None |
FILE_CHARSET | 'utf-8' |
DEBUG | True |
LANGUAGE_COOKIE_DOMAIN | None |
DEFAULT_FILE_STORAGE | 'django.core.files.storage.FileSystemStorage' |
INSTALLED_APPS | ('django.contrib.auth', 'django.contrib.contenttypes', 'django.contrib.sessions', 'django.contrib.sites', 'django.contrib.messages', 'django.contrib.staticfiles', 'django.contrib.humanize', 'django.contrib.admin', 'social_django', 'networks', 'inference', 'nwpadmin', 'search') |
LANGUAGES | (('af', 'Afrikaans'), ('ar', 'Arabic'), ('ast', 'Asturian'), ('az', 'Azerbaijani'), ('bg', 'Bulgarian'), ('be', 'Belarusian'), ('bn', 'Bengali'), ('br', 'Breton'), ('bs', 'Bosnian'), ('ca', 'Catalan'), ('cs', 'Czech'), ('cy', 'Welsh'), ('da', 'Danish'), ('de', 'German'), ('el', 'Greek'), ('en', 'English'), ('en-au', 'Australian English'), ('en-gb', 'British English'), ('eo', 'Esperanto'), ('es', 'Spanish'), ('es-ar', 'Argentinian Spanish'), ('es-mx', 'Mexican Spanish'), ('es-ni', 'Nicaraguan Spanish'), ('es-ve', 'Venezuelan Spanish'), ('et', 'Estonian'), ('eu', 'Basque'), ('fa', 'Persian'), ('fi', 'Finnish'), ('fr', 'French'), ('fy', 'Frisian'), ('ga', 'Irish'), ('gl', 'Galician'), ('he', 'Hebrew'), ('hi', 'Hindi'), ('hr', 'Croatian'), ('hu', 'Hungarian'), ('ia', 'Interlingua'), ('id', 'Indonesian'), ('io', 'Ido'), ('is', 'Icelandic'), ('it', 'Italian'), ('ja', 'Japanese'), ('ka', 'Georgian'), ('kk', 'Kazakh'), ('km', 'Khmer'), ('kn', 'Kannada'), ('ko', 'Korean'), ('lb', 'Luxembourgish'), ('lt', 'Lithuanian'), ('lv', 'Latvian'), ('mk', 'Macedonian'), ('ml', 'Malayalam'), ('mn', 'Mongolian'), ('mr', 'Marathi'), ('my', 'Burmese'), ('nb', 'Norwegian Bokmal'), ('ne', 'Nepali'), ('nl', 'Dutch'), ('nn', 'Norwegian Nynorsk'), ('os', 'Ossetic'), ('pa', 'Punjabi'), ('pl', 'Polish'), ('pt', 'Portuguese'), ('pt-br', 'Brazilian Portuguese'), ('ro', 'Romanian'), ('ru', 'Russian'), ('sk', 'Slovak'), ('sl', 'Slovenian'), ('sq', 'Albanian'), ('sr', 'Serbian'), ('sr-latn', 'Serbian Latin'), ('sv', 'Swedish'), ('sw', 'Swahili'), ('ta', 'Tamil'), ('te', 'Telugu'), ('th', 'Thai'), ('tr', 'Turkish'), ('tt', 'Tatar'), ('udm', 'Udmurt'), ('uk', 'Ukrainian'), ('ur', 'Urdu'), ('vi', 'Vietnamese'), ('zh-cn', 'Simplified Chinese'), ('zh-hans', 'Simplified Chinese'), ('zh-hant', 'Traditional Chinese'), ('zh-tw', 'Traditional Chinese')) |
USE_L10N | True |
SECURE_HSTS_INCLUDE_SUBDOMAINS | False |
STATICFILES_DIRS | ('/local/apache-stuff/network_portal/web_app/static',) |
PREPEND_WWW | False |
SECURE_PROXY_SSL_HEADER | None |
LANGUAGE_COOKIE_AGE | None |
KBASE_DATA_WORKSPACE | 'nwportal:nwportal_data' |
KBASE_INF_SERVICE_URL | 'http://140.221.67.196:7113' |
DEBUG_PROPAGATE_EXCEPTIONS | False |
KBASE_PASSWD | u'********************' |
MONTH_DAY_FORMAT | 'F j' |
LOGIN_URL | '/accounts/login/' |
SESSION_EXPIRE_AT_BROWSER_CLOSE | False |
SOCIAL_AUTH_GOOGLE_OAUTH2_KEY | u'********************' |
TIME_FORMAT | 'P' |
AUTH_USER_MODEL | 'auth.User' |
DATE_INPUT_FORMATS | ('%Y-%m-%d', '%m/%d/%Y', '%m/%d/%y', '%b %d %Y', '%b %d, %Y', '%d %b %Y', '%d %b, %Y', '%B %d %Y', '%B %d, %Y', '%d %B %Y', '%d %B, %Y') |
CSRF_COOKIE_NAME | 'csrftoken' |
EMAIL_HOST_PASSWORD | u'********************' |
PASSWORD_RESET_TIMEOUT_DAYS | u'********************' |
SESSION_FILE_PATH | None |
CACHE_MIDDLEWARE_ALIAS | 'default' |
SESSION_SAVE_EVERY_REQUEST | False |
ADMIN_MEDIA_PREFIX | '/static/admin/' |
NUMBER_GROUPING | 0 |
SESSION_ENGINE | 'django.contrib.sessions.backends.db' |
CSRF_FAILURE_VIEW | 'django.views.csrf.csrf_failure' |
CSRF_COOKIE_PATH | '/' |
LOGIN_REDIRECT_URL | '/accounts/profile/' |
KBASE_WS_SERVICE_URL | 'https://kbase.us/services/ws' |
PROJECT_ROOT | '/local/apache-stuff/network_portal/web_app/nwportal/settings/../..' |
DECIMAL_SEPARATOR | '.' |
IGNORABLE_404_URLS | () |
LOCALE_PATHS | () |
TEMPLATE_STRING_IF_INVALID | '' |
SOCIAL_AUTH_URL_NAMESPACE | 'social' |
SOLR_SELECT_MODULES | 'http://localhost:8983/solr/nwportal_adv/select/' |
LOGOUT_URL | '/accounts/logout/' |
EMAIL_USE_TLS | False |
SOLR_SUGGEST | 'http://localhost:8983/solr/nwportal/suggest/?wt=json&json.wrf=?' |
FIXTURE_DIRS | () |
EMAIL_HOST | 'localhost' |
DATE_FORMAT | 'N j, Y' |
MEDIA_ROOT | '' |
KBASE_CMRESULTS_WORKSPACE | 'nwportal:cmtestresults' |
DEFAULT_EXCEPTION_REPORTER_FILTER | 'django.views.debug.SafeExceptionReporterFilter' |
ADMINS | () |
FORMAT_MODULE_PATH | None |
DEFAULT_FROM_EMAIL | 'webmaster@localhost' |
MEDIA_URL | '' |
DATETIME_FORMAT | 'N j, Y, P' |
TEMPLATE_DIRS | ('/local/apache-stuff/network_portal/web_app/templates', '/local/apache-stuff/network_portal/web_app/networks/templates') |
SITE_ID | 1 |
DISALLOWED_USER_AGENTS | () |
ALLOWED_INCLUDE_ROOTS | () |
USE_I18N | True |
CMONKEY_RABBITMQ | u'********************' |
LOGGING | {'disable_existing_loggers': False, 'handlers': {'mail_admins': {'class': 'django.utils.log.AdminEmailHandler', 'level': 'ERROR'}}, 'loggers': {'django.request': {'handlers': ['mail_admins'], 'level': 'ERROR', 'propagate': True}}, 'version': 1} |
SHORT_DATE_FORMAT | 'm/d/Y' |
TEMPLATES | [] |
TEST_RUNNER | 'django.test.runner.DiscoverRunner' |
CACHE_MIDDLEWARE_KEY_PREFIX | u'********************' |
SECURE_SSL_REDIRECT | False |
KBASE_CM_SERVICE_URL | 'http://140.221.67.196:7112' |
SOLR_SELECT_GENES | 'http://localhost:8983/solr/nwportal/select/' |
FILE_UPLOAD_MAX_MEMORY_SIZE | 2621440 |
EMAIL_BACKEND | 'django.core.mail.backends.smtp.EmailBackend' |
CSRF_COOKIE_AGE | 31449600 |
EMAIL_USE_SSL | False |
SESSION_COOKIE_HTTPONLY | True |
MIGRATION_MODULES | {} |
SESSION_COOKIE_AGE | 1209600 |
SETTINGS_MODULE | 'nwportal.settings.production' |
USE_ETAGS | False |
LANGUAGES_BIDI | ('he', 'ar', 'fa', 'ur') |
FILE_UPLOAD_TEMP_DIR | None |
INTERNAL_IPS | () |
STATIC_URL | '/static/' |
EMAIL_PORT | 25 |
USE_TZ | True |
SHORT_DATETIME_FORMAT | 'm/d/Y P' |
TEST_NON_SERIALIZED_APPS | [] |
PASSWORD_HASHERS | u'********************' |
ABSOLUTE_URL_OVERRIDES | {} |
LANGUAGE_COOKIE_PATH | '/' |
CACHE_MIDDLEWARE_SECONDS | 600 |
EMAIL_SSL_CERTFILE | None |
CSRF_COOKIE_HTTPONLY | False |
DATETIME_INPUT_FORMATS | ('%Y-%m-%d %H:%M:%S', '%Y-%m-%d %H:%M:%S.%f', '%Y-%m-%d %H:%M', '%Y-%m-%d', '%m/%d/%Y %H:%M:%S', '%m/%d/%Y %H:%M:%S.%f', '%m/%d/%Y %H:%M', '%m/%d/%Y', '%m/%d/%y %H:%M:%S', '%m/%d/%y %H:%M:%S.%f', '%m/%d/%y %H:%M', '%m/%d/%y') |
EMAIL_HOST_USER | '' |
You're seeing this error because you have DEBUG = True
in your
Django settings file. Change that to False
, and Django will
display a standard page generated by the handler for this status code.