coercing to Unicode: need string or buffer, NoneType found
Request Method: | GET |
---|---|
Request URL: | https://networks.systemsbiology.net/gsu/gene/GSU3411 |
Django Version: | 1.8.3 |
Exception Type: | TypeError |
Exception Value: | coercing to Unicode: need string or buffer, NoneType found |
Exception Location: | /local/apache-stuff/network_portal/web_app/networks/templatetags/filters.py in influences_to_gene_description_map, line 182 |
Python Executable: | /usr/bin/python |
Python Version: | 2.7.5 |
Python Path: | ['/local/apache-stuff/network_portal/web_app', '/usr/lib64/python27.zip', '/usr/lib64/python2.7', '/usr/lib64/python2.7/plat-linux2', '/usr/lib64/python2.7/lib-tk', '/usr/lib64/python2.7/lib-old', '/usr/lib64/python2.7/lib-dynload', '/usr/lib64/python2.7/site-packages', '/usr/lib64/python2.7/site-packages/gtk-2.0', '/usr/lib/python2.7/site-packages'] |
Server time: | Thu, 28 Mar 2024 12:07:25 -0700 |
In template /local/apache-stuff/network_portal/web_app/networks/templates/gene_regulation_snippet.html
, error at line 9
1 | {% load filters %} |
---|---|
2 | {% load format_tags %} |
3 | <a class="help" href="#regulation"><img align="right" src="/static/images/help.png" /></a> |
4 | <h5> Regulation information for {{ gene }} </h5> <span class="search_help">(Mouseover regulator name to see its description)</span> |
5 | <p> |
6 | <div class="tab-contents"> |
7 | <script type="text/javascript"> |
8 | $(document).ready(function() { |
9 | {{ influence_biclusters|influences_to_gene_description_map }} ; |
10 | $('.reggene').on('mouseover', function(event) { |
11 | var geneName = $(this).html(); |
12 | $(this).qtip({ |
13 | prerender: true, |
14 | content: descriptionMap[geneName] |
15 | }, event); |
16 | }); |
17 | }); |
18 | </script> |
19 |
/usr/lib/python2.7/site-packages/django/core/handlers/base.py
in get_response
response = middleware_method(request, callback, callback_args, callback_kwargs)
if response:
break
if response is None:
wrapped_callback = self.make_view_atomic(callback)
try:
response = wrapped_callback(request, *callback_args, **callback_kwargs)...
except Exception as e:
# If the view raised an exception, run it through exception
# middleware, and if the exception middleware returns a
# response, use that. Otherwise, reraise the exception.
for middleware_method in self._exception_middleware:
response = middleware_method(request, e)
Variable | Value |
---|---|
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
callback_args | () |
resolver_match | ResolverMatch(func=networks.views.gene, args=(), kwargs={'gene': u'GSU3411', 'species': u'gsu'}, url_name=gene, app_name=None, namespaces=[]) |
middleware_method | <bound method CsrfViewMiddleware.process_view of <django.middleware.csrf.CsrfViewMiddleware object at 0x7f128c42c690>> |
self | <django.core.handlers.wsgi.WSGIHandler object at 0x7f12d81c9f10> |
request | "<WSGIRequest\npath:/gsu/gene/GSU3411,\nGET:<QueryDict: {}>,\nPOST:<QueryDict: {}>,\nCOOKIES:{},\nMETA:{'CONTEXT_DOCUMENT_ROOT': '/local/apache-stuff/network_portal',\n 'CONTEXT_PREFIX': '',\n u'CSRF_COOKIE': u'5qsupuBrPef81Z7AUUOSWbPO4jecuBpS',\n 'DOCUMENT_ROOT': '/local/apache-stuff/network_portal',\n 'GATEWAY_INTERFACE': 'CGI/1.1',\n 'HTTP_ACCEPT': '*/*',\n 'HTTP_CONNECTION': 'close',\n 'HTTP_HOST': 'networks.systemsbiology.net',\n 'HTTP_REFERER': 'http://networks.systemsbiology.net/gsu/gene/GSU3411',\n 'HTTP_USER_AGENT': 'claudebot',\n 'HTTP_X_FORWARDED_FOR': '44.220.131.93',\n 'HTTP_X_FORWARDED_PROTO': 'https',\n 'HTTP_X_REAL_IP': '44.220.131.93',\n 'PATH_INFO': u'/gsu/gene/GSU3411',\n 'PATH_TRANSLATED': '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py/gsu/gene/GSU3411',\n 'QUERY_STRING': '',\n 'REMOTE_ADDR': '10.3.0.181',\n 'REMOTE_PORT': '36724',\n 'REQUEST_METHOD': 'GET',\n 'REQUEST_SCHEME': 'https',\n 'REQUEST_URI': '/gsu/gene/GSU3411',\n 'SCRIPT_FILENAME': '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py',\n 'SCRIPT_NAME': u'',\n 'SERVER_ADDR': '10.2.8.50',\n 'SERVER_ADMIN': 'root@localhost',\n 'SERVER_NAME': 'networks.systemsbiology.net',\n 'SERVER_PORT': '443',\n 'SERVER_PROTOCOL': 'HTTP/1.1',\n 'SERVER_SIGNATURE': '',\n 'SERVER_SOFTWARE': 'Apache',\n 'UNIQUE_ID': 'ZgW-7DxeZOV3-UNaonqM0AAAAAA',\n 'mod_wsgi.application_group': '',\n 'mod_wsgi.callable_object': 'application',\n 'mod_wsgi.enable_sendfile': '0',\n 'mod_wsgi.handler_script': '',\n 'mod_wsgi.input_chunked': '0',\n 'mod_wsgi.listener_host': '',\n 'mod_wsgi.listener_port': '443',\n 'mod_wsgi.process_group': 'networks-ssl',\n 'mod_wsgi.queue_start': '1711652844915379',\n 'mod_wsgi.request_handler': 'wsgi-script',\n 'mod_wsgi.script_reloading': '1',\n 'mod_wsgi.version': (3, 4),\n 'wsgi.errors': <mod_wsgi.Log object at 0x7f127f941f70>,\n 'wsgi.file_wrapper': <built-in method file_wrapper of mod_wsgi.Adapter object at 0x7f12841e3dc8>,\n 'wsgi.input': <mod_wsgi.Input object at 0x7f127f941b70>,\n 'wsgi.multiprocess': True,\n 'wsgi.multithread': True,\n 'wsgi.run_once': False,\n 'wsgi.url_scheme': 'https',\n 'wsgi.version': (1, 0)}>" |
callback | <function gene at 0x7f128c353c80> |
wrapped_callback | <function gene at 0x7f128c353c80> |
resolver | <RegexURLResolver 'nwportal.urls' (None:None) ^/> |
callback_kwargs | {'gene': u'GSU3411', 'species': u'gsu'} |
response | None |
urlconf | 'nwportal.urls' |
/local/apache-stuff/network_portal/web_app/networks/views.py
in gene
bicluster_pssms[motif_id] = pssm
if not preview_added:
preview_motifs.append(motif_id)
preview_added = True
motifs = all_motifs # used in template
preview_motifs = preview_motifs[:2] # restrict to 2 motifs on the front tab to improve load time
return render_to_response('gene.html', locals())...
# WW: these go into an embedded frame, so for security reasons make sure these are hosted
# on the same domain
SVG_MAP = {
'dvu': "/static/cmonkey_enigma/cmonkey_4.8.2_dvu_3491x739_11_Mar_02_17:37:51/svgs/",
'mmp': "/static/cmonkey_enigma/mmp/cmonkey_4.8.8_mmp_1661x58_11_Oct_11_16:14:07/svgs/",
Variable | Value |
---|---|
all_motifs | [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>] |
influence_biclusters | [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)] |
count_regulated_biclusters | 0 |
motif_id | 2723 |
species | <Species: Geobacter sulfurreducens> |
pssms | {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]} |
functions | [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>] |
network | <Network: Geobacter_sulfurreducens network> |
system | {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'} |
preview_motifs | [2488, 2722] |
systems | [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}] |
motifs | [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>] |
neighbor_genes | [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Gene: GSU0934>, <Gene: GSU0997>, <Gene: GSU1009>, <Gene: GSU1019>, <Gene: GSU1109>, <Gene: GSU1270>, <Gene: GSU1272>, <Gene: GSU1297>, <Gene: GSU1405>, <Gene: GSU1562>, <Gene: GSU1563>, <Gene: GSU1574>, <Gene: GSU2001>, <Gene: GSU2103>, <Gene: GSU2239>, <Gene: GSU2337>, <Gene: GSU2350>, <Gene: GSU2363>, <Gene: GSU2411>, <Gene: GSU2414>, <Gene: GSU2418>, <Gene: GSU2674>, <Gene: GSU2683>, <Gene: GSU2736>, <Gene: GSU2989>, <Gene: GSU2997>, <Gene: GSU3049>, <Gene: GSU3133>, <Gene: GSU3147>, <Gene: GSU3276>, <Gene: GSU3314>, <Gene: GSU3371>, <Gene: GSU3411>, <Gene: GSU3421>] |
function | <Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog> |
member_biclusters | [<Bicluster: Bicluster 164>, <Bicluster: Bicluster 281>] |
STATIC_PREFIX | '/static/' |
key | u'cog' |
bicluster_pssms | {2488: [[0.666667, 0.166667, 0.166667, 0.0], [0.166667, 0.0, 0.833333, 0.0], [0.0, 0.166667, 0.0, 0.833333], [0.666667, 0.166667, 0.166667, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.166667, 0.0, 0.833333, 0.0], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 1.0, 0.0], [0.5, 0.5, 0.0, 0.0], [0.0, 0.333333, 0.5, 0.166667], [0.0, 0.333333, 0.0, 0.666667], [1.0, 0.0, 0.0, 0.0], [0.0, 0.666667, 0.333333, 0.0], [1.0, 0.0, 0.0, 0.0], [0.833333, 0.0, 0.0, 0.166667], [0.833333, 0.166667, 0.0, 0.0], [0.333333, 0.166667, 0.5, 0.0], [0.166667, 0.0, 0.833333, 0.0], [0.0, 0.833333, 0.166667, 0.0], [0.0, 0.0, 0.0, 1.0]], 2489: [[0.125, 0.0, 0.0, 0.875], [0.0, 0.875, 0.125, 0.0], [0.0, 0.125, 0.125, 0.75], [0.0, 1.0, 0.0, 0.0], [0.625, 0.375, 0.0, 0.0], [0.0, 0.125, 0.5, 0.375], [0.0, 1.0, 0.0, 0.0], [0.0, 0.125, 0.5, 0.375], [0.125, 0.0, 0.75, 0.125], [0.0, 0.75, 0.25, 0.0], [0.0, 0.0, 0.25, 0.75], [0.0, 0.875, 0.125, 0.0], [0.0, 1.0, 0.0, 0.0], [0.125, 0.25, 0.0, 0.625], [0.375, 0.5, 0.0, 0.125], [0.0, 0.875, 0.0, 0.125], [0.0, 0.25, 0.0, 0.75], [0.625, 0.0, 0.0, 0.375], [0.0, 1.0, 0.0, 0.0], [0.25, 0.125, 0.125, 0.5], [0.0, 1.0, 0.0, 0.0]], 2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]} |
pssm | [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]] |
network_id | 6 |
regulated_biclusters | [] |
request | "<WSGIRequest\npath:/gsu/gene/GSU3411,\nGET:<QueryDict: {}>,\nPOST:<QueryDict: {}>,\nCOOKIES:{},\nMETA:{'CONTEXT_DOCUMENT_ROOT': '/local/apache-stuff/network_portal',\n 'CONTEXT_PREFIX': '',\n u'CSRF_COOKIE': u'5qsupuBrPef81Z7AUUOSWbPO4jecuBpS',\n 'DOCUMENT_ROOT': '/local/apache-stuff/network_portal',\n 'GATEWAY_INTERFACE': 'CGI/1.1',\n 'HTTP_ACCEPT': '*/*',\n 'HTTP_CONNECTION': 'close',\n 'HTTP_HOST': 'networks.systemsbiology.net',\n 'HTTP_REFERER': 'http://networks.systemsbiology.net/gsu/gene/GSU3411',\n 'HTTP_USER_AGENT': 'claudebot',\n 'HTTP_X_FORWARDED_FOR': '44.220.131.93',\n 'HTTP_X_FORWARDED_PROTO': 'https',\n 'HTTP_X_REAL_IP': '44.220.131.93',\n 'PATH_INFO': u'/gsu/gene/GSU3411',\n 'PATH_TRANSLATED': '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py/gsu/gene/GSU3411',\n 'QUERY_STRING': '',\n 'REMOTE_ADDR': '10.3.0.181',\n 'REMOTE_PORT': '36724',\n 'REQUEST_METHOD': 'GET',\n 'REQUEST_SCHEME': 'https',\n 'REQUEST_URI': '/gsu/gene/GSU3411',\n 'SCRIPT_FILENAME': '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py',\n 'SCRIPT_NAME': u'',\n 'SERVER_ADDR': '10.2.8.50',\n 'SERVER_ADMIN': 'root@localhost',\n 'SERVER_NAME': 'networks.systemsbiology.net',\n 'SERVER_PORT': '443',\n 'SERVER_PROTOCOL': 'HTTP/1.1',\n 'SERVER_SIGNATURE': '',\n 'SERVER_SOFTWARE': 'Apache',\n 'UNIQUE_ID': 'ZgW-7DxeZOV3-UNaonqM0AAAAAA',\n 'mod_wsgi.application_group': '',\n 'mod_wsgi.callable_object': 'application',\n 'mod_wsgi.enable_sendfile': '0',\n 'mod_wsgi.handler_script': '',\n 'mod_wsgi.input_chunked': '0',\n 'mod_wsgi.listener_host': '',\n 'mod_wsgi.listener_port': '443',\n 'mod_wsgi.process_group': 'networks-ssl',\n 'mod_wsgi.queue_start': '1711652844915379',\n 'mod_wsgi.request_handler': 'wsgi-script',\n 'mod_wsgi.script_reloading': '1',\n 'mod_wsgi.version': (3, 4),\n 'wsgi.errors': <mod_wsgi.Log object at 0x7f127f941f70>,\n 'wsgi.file_wrapper': <built-in method file_wrapper of mod_wsgi.Adapter object at 0x7f12841e3dc8>,\n 'wsgi.input': <mod_wsgi.Input object at 0x7f127f941b70>,\n 'wsgi.multiprocess': True,\n 'wsgi.multithread': True,\n 'wsgi.run_once': False,\n 'wsgi.url_scheme': 'https',\n 'wsgi.version': (1, 0)}>" |
mbicl | <Bicluster: Bicluster 281> |
gene | <Gene: GSU3411> |
preview_added | True |
view | '' |
/usr/lib/python2.7/site-packages/django/shortcuts.py
in render_to_response
Returns a HttpResponse whose content is filled with the result of calling
django.template.loader.render_to_string() with the passed arguments.
"""
if (context_instance is _context_instance_undefined
and dirs is _dirs_undefined
and dictionary is _dictionary_undefined):
# No deprecated arguments were passed - use the new code path
content = loader.render_to_string(template_name, context, using=using)...
else:
# Some deprecated arguments were passed - use the legacy code path
content = loader.render_to_string(
template_name, context, context_instance, dirs, dictionary,
using=using)
Variable | Value |
---|---|
dirs | <object object at 0x7f12d82db690> |
status | None |
content_type | None |
dictionary | <object object at 0x7f12d82db680> |
template_name | 'gene.html' |
context_instance | <object object at 0x7f12d82db670> |
context | {u'STATIC_PREFIX': '/static/', 'all_motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'bicluster_pssms': {2488: [[0.666667, 0.166667, 0.166667, 0.0], [0.166667, 0.0, 0.833333, 0.0], [0.0, 0.166667, 0.0, 0.833333], [0.666667, 0.166667, 0.166667, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.166667, 0.0, 0.833333, 0.0], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 1.0, 0.0], [0.5, 0.5, 0.0, 0.0], [0.0, 0.333333, 0.5, 0.166667], [0.0, 0.333333, 0.0, 0.666667], [1.0, 0.0, 0.0, 0.0], [0.0, 0.666667, 0.333333, 0.0], [1.0, 0.0, 0.0, 0.0], [0.833333, 0.0, 0.0, 0.166667], [0.833333, 0.166667, 0.0, 0.0], [0.333333, 0.166667, 0.5, 0.0], [0.166667, 0.0, 0.833333, 0.0], [0.0, 0.833333, 0.166667, 0.0], [0.0, 0.0, 0.0, 1.0]], 2489: [[0.125, 0.0, 0.0, 0.875], [0.0, 0.875, 0.125, 0.0], [0.0, 0.125, 0.125, 0.75], [0.0, 1.0, 0.0, 0.0], [0.625, 0.375, 0.0, 0.0], [0.0, 0.125, 0.5, 0.375], [0.0, 1.0, 0.0, 0.0], [0.0, 0.125, 0.5, 0.375], [0.125, 0.0, 0.75, 0.125], [0.0, 0.75, 0.25, 0.0], [0.0, 0.0, 0.25, 0.75], [0.0, 0.875, 0.125, 0.0], [0.0, 1.0, 0.0, 0.0], [0.125, 0.25, 0.0, 0.625], [0.375, 0.5, 0.0, 0.125], [0.0, 0.875, 0.0, 0.125], [0.0, 0.25, 0.0, 0.75], [0.625, 0.0, 0.0, 0.375], [0.0, 1.0, 0.0, 0.0], [0.25, 0.125, 0.125, 0.5], [0.0, 1.0, 0.0, 0.0]], 2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'count_regulated_biclusters': 0, 'function': <Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>, 'functions': [<Function: Function: COG0210, Superfamily I DN... <trimmed 11789 bytes string> |
using | None |
/usr/lib/python2.7/site-packages/django/template/loader.py
in render_to_string
and dirs is _dirs_undefined
and dictionary is _dictionary_undefined):
# No deprecated arguments were passed - use the new code path
if isinstance(template_name, (list, tuple)):
template = select_template(template_name, using=using)
else:
template = get_template(template_name, using=using)
return template.render(context, request)...
else:
# Some deprecated arguments were passed - use the legacy code path
for engine in _engine_list(using):
try:
# This is required for deprecating properly arguments specific
Variable | Value |
---|---|
dirs | <object object at 0x7f12d82db690> |
template | <django.template.backends.django.Template object at 0x7f1284414d90> |
dictionary | <object object at 0x7f12d82db680> |
template_name | 'gene.html' |
request | None |
context_instance | <object object at 0x7f12d82db670> |
context | {u'STATIC_PREFIX': '/static/', 'all_motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'bicluster_pssms': {2488: [[0.666667, 0.166667, 0.166667, 0.0], [0.166667, 0.0, 0.833333, 0.0], [0.0, 0.166667, 0.0, 0.833333], [0.666667, 0.166667, 0.166667, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.166667, 0.0, 0.833333, 0.0], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 1.0, 0.0], [0.5, 0.5, 0.0, 0.0], [0.0, 0.333333, 0.5, 0.166667], [0.0, 0.333333, 0.0, 0.666667], [1.0, 0.0, 0.0, 0.0], [0.0, 0.666667, 0.333333, 0.0], [1.0, 0.0, 0.0, 0.0], [0.833333, 0.0, 0.0, 0.166667], [0.833333, 0.166667, 0.0, 0.0], [0.333333, 0.166667, 0.5, 0.0], [0.166667, 0.0, 0.833333, 0.0], [0.0, 0.833333, 0.166667, 0.0], [0.0, 0.0, 0.0, 1.0]], 2489: [[0.125, 0.0, 0.0, 0.875], [0.0, 0.875, 0.125, 0.0], [0.0, 0.125, 0.125, 0.75], [0.0, 1.0, 0.0, 0.0], [0.625, 0.375, 0.0, 0.0], [0.0, 0.125, 0.5, 0.375], [0.0, 1.0, 0.0, 0.0], [0.0, 0.125, 0.5, 0.375], [0.125, 0.0, 0.75, 0.125], [0.0, 0.75, 0.25, 0.0], [0.0, 0.0, 0.25, 0.75], [0.0, 0.875, 0.125, 0.0], [0.0, 1.0, 0.0, 0.0], [0.125, 0.25, 0.0, 0.625], [0.375, 0.5, 0.0, 0.125], [0.0, 0.875, 0.0, 0.125], [0.0, 0.25, 0.0, 0.75], [0.625, 0.0, 0.0, 0.375], [0.0, 1.0, 0.0, 0.0], [0.25, 0.125, 0.125, 0.5], [0.0, 1.0, 0.0, 0.0]], 2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'count_regulated_biclusters': 0, 'function': <Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>, 'functions': [<Function: Function: COG0210, Superfamily I DN... <trimmed 11789 bytes string> |
using | None |
/usr/lib/python2.7/site-packages/django/template/backends/django.py
in render
warnings.warn(
"render() must be called with a dict, not a Context.",
RemovedInDjango110Warning, stacklevel=2)
else:
context = make_context(context, request)
return self.template.render(context)...
Variable | Value |
---|---|
self | <django.template.backends.django.Template object at 0x7f1284414d90> |
request | None |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
def render(self, context):
"Display stage -- can be called many times"
context.render_context.push()
try:
if context.template is None:
with context.bind_template(self):
return self._render(context)...
else:
return self._render(context)
finally:
context.render_context.pop()
Variable | Value |
---|---|
self | <django.template.base.Template object at 0x7f127f96e710> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in _render
def __iter__(self):
for node in self.nodelist:
for subnode in node:
yield subnode
def _render(self, context):
return self.nodelist.render(context)...
def render(self, context):
"Display stage -- can be called many times"
context.render_context.push()
try:
if context.template is None:
Variable | Value |
---|---|
self | <django.template.base.Template object at 0x7f127f96e710> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
# extend_nodelist().
contains_nontext = False
def render(self, context):
bits = []
for node in self:
if isinstance(node, Node):
bit = self.render_node(node, context)...
else:
bit = node
bits.append(force_text(bit))
return mark_safe(''.join(bits))
def get_nodes_by_type(self, nodetype):
Variable | Value |
---|---|
node | <ExtendsNode: extends "base2.html"> |
self | [<ExtendsNode: extends "base2.html">] |
bits | [] |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
/usr/lib/python2.7/site-packages/django/template/debug.py
in render_node
if not hasattr(e, 'django_template_source'):
e.django_template_source = token.source
class DebugNodeList(NodeList):
def render_node(self, node, context):
try:
return node.render(context)...
except Exception as e:
if not hasattr(e, 'django_template_source'):
e.django_template_source = node.source
raise
Variable | Value |
---|---|
node | <ExtendsNode: extends "base2.html"> |
self | [<ExtendsNode: extends "base2.html">] |
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
/usr/lib/python2.7/site-packages/django/template/loader_tags.py
in render
blocks = {n.name: n for n in
compiled_parent.nodelist.get_nodes_by_type(BlockNode)}
block_context.add_blocks(blocks)
break
# Call Template._render explicitly so the parser context stays
# the same.
return compiled_parent._render(context)...
class IncludeNode(Node):
def __init__(self, template, *args, **kwargs):
self.template = template
self.extra_context = kwargs.pop('extra_context', {})
Variable | Value |
---|---|
node | <django.template.defaulttags.LoadNode object at 0x7f127f9ae690> |
blocks | {u'basewrap': <Block Node: basewrap. Contents: [<Text Node: '<div id="wrap-no-line">'>]>, u'content': <Block Node: content. Contents: []>, u'csscommon': <Block Node: csscommon. Contents: [<Text Node: ' <link rel="styleshee'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/portal-style.'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/jquery.reject'>]>, u'cssreset': <Block Node: cssreset. Contents: []>, u'cssspecial': <Block Node: cssspecial. Contents: []>, u'footer': <Block Node: footer. Contents: [<Text Node: ' <!--<a href="ht'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/kbase-logo.jpg"></'>, <django.template.defaulttags.URLNode object at 0x7f127f9ae150>, <Text Node: '">Development</a> '>, <django.template.defaulttags.URLNode object at 0x7f127f9ae7d0>, <Text Node: '">Home</a></p> '>]>, u'jscommon': <Block Node: jscommon. Contents: [<Text Node: ' <!--<script type="te'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'cytoscapeweb/js/json2.min'>]>, u'jsspecial': <Block Node: jsspecial. Contents: []>, u'title': <Block Node: title. Contents: [<Text Node: 'Network Portal'>]>} |
block_context | <django.template.loader_tags.BlockContext object at 0x7f12842451d0> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
compiled_parent | <django.template.base.Template object at 0x7f1284245610> |
self | <ExtendsNode: extends "base2.html"> |
/usr/lib/python2.7/site-packages/django/template/base.py
in _render
def __iter__(self):
for node in self.nodelist:
for subnode in node:
yield subnode
def _render(self, context):
return self.nodelist.render(context)...
def render(self, context):
"Display stage -- can be called many times"
context.render_context.push()
try:
if context.template is None:
Variable | Value |
---|---|
self | <django.template.base.Template object at 0x7f1284245610> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
# extend_nodelist().
contains_nontext = False
def render(self, context):
bits = []
for node in self:
if isinstance(node, Node):
bit = self.render_node(node, context)...
else:
bit = node
bits.append(force_text(bit))
return mark_safe(''.join(bits))
def get_nodes_by_type(self, nodetype):
Variable | Value |
---|---|
node | <Block Node: content. Contents: []> |
bit | u'\n <div id="content">\n ' |
bits | [u'', u'', u'<!doctype html>\n<html>\n <head>\n <title>', u'Network Portal - Gene GSU3411', u'</title>\n ', u'\n<link rel="stylesheet" type="text/css" href="http://www.ncbi.nlm.nih.gov/core/extjs/ext-3.4.0/resources/css/ext-all.css" />\n<link rel="stylesheet" type="text/css" href="http://www.ncbi.nlm.nih.gov/core/extjs/ext-3.4.0/resources/css/xtheme-gray.css" id="theme" />\n<link rel="stylesheet" type="text/css" href="http://www.ncbi.nlm.nih.gov/coreweb/styles/ncbi_templates.css" />\n<!-- <link rel="stylesheet" type="text/css" href="http://www.ncbi.nlm.nih.gov/projects/sviewer/css/style.css" /> -->\n<link rel="stylesheet" href="http://code.jquery.com/ui/1.9.2/themes/redmond/jquery-ui.css" />\n', u'\n ', u'\n <link rel="stylesheet" href="/static/stylesheets/portal-style.css">\n <link rel="stylesheet" href="/static/stylesheets/jquery.reject.css">', u'\n <link href="', u'/static/', u'javascripts/jquery.qtip.min.css" rel="stylesheet" type="text/css" />\n ', u'<link href="http://cdn.wijmo.com/jquery.wijmo-open.1.5.0.css" rel="stylesheet" type="text/css" />\n<link rel="stylesheet" href="/static/stylesheets/colorbox.css" />\n<link href="/static/javascripts/jquery.qtip.min.css" rel="stylesheet" type="text/css" />', u'\n ', u'\n <!--<script type="text/javascript" src="http://code.jquery.com/jquery-latest.js"></script> -->\n <script src="http://ajax.googleapis.com/ajax/libs/jquery/1.10.2/jquery.js"></script>\n\n <script src="/static/javascripts/jquery-ui-1.11.2.custom/jquery-ui.min.js"></script>\n <link rel="stylesheet" href="/static/javascripts/jquery-ui-1.11.2.custom/jquery-ui.min.css">\n <script type="text/javascript" src="/static/cytoscapeweb/js/json2.min.js"></script>\n ', u'\n ', u'<script type="text/javascript" src="/static/cytoscapeweb/js/AC_OETags.min.js"></script>\n <script type="text/javascript" src="/static/cytoscapeweb/js/cytoscapeweb.min.js"></script>\n <script type="text/javascript" src="/static/javascripts/wwu_logo/isblogo.js"></script>\n <script type="text/javascript" src="/static/javascripts/network_helpers.js"></script>\n <script type="text/javascript" src="/static/javascripts/jquery.qtip.min.js"></script>\n <script type="text/javascript" src="http://cdn.wijmo.com/jquery.wijmo-open.1.5.0.min.js"></script>\n <script type="text/javascript" src="/static/javascripts/protovis.min.js"></script>\n <script type="text/javascript" src="/static/javascripts/visquick-min/vq.min.js"></script>\n <script type="text/javascript" src="/static/javascripts/visquick-min/vq.circvis.min.js"></script>\n <script type="text/javascript" src="/static/javascripts/visquick_helpers.js"></script>\n <script type=\'text/javascript\' src=\'/static/javascripts/jquery.colorbox.js\'></script>\n<!-- <script type="text/javascript" src="http://www.ncbi.nlm.nih.gov/core/extjs/ext-3.4.0/adapter/ext/ext-base.js"></script>\n <script type="text/javascript" src="http://www.ncbi.nlm.nih.gov/core/extjs/ext-3.4.0/ext-all.js"></script>\n <script type="text/javascript">window.sv_base_url = "/sviewer/"</script>-->\n<!-- These are required for loading NCBI sequence viewer in gene page -->\n<!--<script type="text/javascript" src="http://www.ncbi.nlm.nih.gov/projects/sviewer/js/main.js"/>-->\n ', u'\n <script type="text/javascript" src="', u'/static/', u'javascripts/main.js"></script>\n <script type="text/javascript" src="', u'/static/', u'javascripts/collapsing_divs.js"></script>\n <script type="text/javascript" src="', u'/static/', u'javascripts/jquery.tablesorter.min.js"></script>\n <script type="text/javascript" src="', u'/static/', u'javascripts/jquery.tablesorter.pager.js"></script>\n\t<script type="text/javascript" src="', u'/static/', u'javascripts/jquery.jcarousel.min.js"></script>\n <script type="text/javascript" src="', u'/static/', u'javascripts/jquery.qtip.min.js"></script>\n <script type="text/javascript" src="', u'/static/', u'javascripts/jquery.reject.min.js"></script>\n <!-- google analytics -->\n <script ty... <trimmed 7458 bytes string> |
self | [<django.template.defaulttags.LoadNode object at 0x7f127f9ae690>, <PrefixNode for 'STATIC_URL'>, <Text Node: '<!doctype html> <html> '>, <Block Node: title. Contents: [<Text Node: 'Network Portal'>]>, <Text Node: '</title> '>, <Block Node: cssreset. Contents: []>, <Text Node: ' '>, <Block Node: csscommon. Contents: [<Text Node: ' <link rel="styleshee'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/portal-style.'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/jquery.reject'>]>, <Text Node: ' <link href="'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.qtip.m'>, <Block Node: cssspecial. Contents: []>, <Text Node: ' '>, <Block Node: jscommon. Contents: [<Text Node: ' <!--<script type="te'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'cytoscapeweb/js/json2.min'>]>, <Text Node: ' '>, <Block Node: jsspecial. Contents: []>, <Text Node: ' <script type="text/j'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/main.js"></sc'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/collapsing_di'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.tables'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.tables'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.jcarou'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.qtip.m'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.reject'>, <Block Node: basewrap. Contents: [<Text Node: '<div id="wrap-no-line">'>]>, <Text Node: ' <div id="header"> '>, <django.template.defaulttags.URLNode object at 0x7f12840ca6d0>, <Text Node: '"><img alt="Logo" src="'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/logo-text.png"></a'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/isb_logo.png"></a>'>, <IfNode>, <Text Node: ' --> <li><a '>, <django.template.defaulttags.URLNode object at 0x7f1284361650>, <Text Node: '">About</a></li> <li><'>, <django.template.defaulttags.URLNode object at 0x7f1284361110>, <Text Node: '">Contact</a></li> <li'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'apidocuments">API</a></li'>, <django.template.defaulttags.LoadNode object at 0x7f1284361fd0>, <Text Node: ' <div id="nav"> '>, <django.template.base.SimpleNode object at 0x7f1284361450>, <Text Node: '"><a href="/">Home</a></l'>, <django.template.base.SimpleNode object at 0x7f127f9ae390>, <Text Node: '"><a href="/search">Searc'>, <django.template.base.SimpleNode object at 0x7f127f9aef10>, <Text Node: '"><a href="/species">Spec'>, <django.template.base.SimpleNode object at 0x7f127f9ae6d0>, <Text Node: '"><a href="/workspace">Wo'>, <IfNode>, <Text Node: ' <li class="'>, <django.template.base.SimpleNode object at 0x7f127f9ae990>, <Text Node: '"><a href="/help/" title='>, <django.template.base.SimpleNode object at 0x7f127f9aead0>, <Text Node: '"><a href="/analysis/gene'>, <Text Node: ' <div id="content">'>, <Block Node: content. Contents: []>, <Text Node: ' </div>'>, <Text Node: ' <div id="footer"> '>, <Block Node: footer. Contents: [<Text Node: ' <!--<a href="ht'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/kbase-logo.jpg"></'>, <django.template.defaulttags.URLNode object at 0x7f127f9ae150>, <Text Node: '">Development</a> '>, <django.template.defaulttags.URLNode object at 0x7f127f9ae7d0>, <Text Node: '">Home</a></p> '>]>, <Text Node: ' </div>'>, <Text Node: ' <center> '>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/kbase-logo.jpg"></'>, <Text Node: ' </body> </html> '>] |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
/usr/lib/python2.7/site-packages/django/template/debug.py
in render_node
if not hasattr(e, 'django_template_source'):
e.django_template_source = token.source
class DebugNodeList(NodeList):
def render_node(self, node, context):
try:
return node.render(context)...
except Exception as e:
if not hasattr(e, 'django_template_source'):
e.django_template_source = node.source
raise
Variable | Value |
---|---|
node | <Block Node: content. Contents: []> |
self | [<django.template.defaulttags.LoadNode object at 0x7f127f9ae690>, <PrefixNode for 'STATIC_URL'>, <Text Node: '<!doctype html> <html> '>, <Block Node: title. Contents: [<Text Node: 'Network Portal'>]>, <Text Node: '</title> '>, <Block Node: cssreset. Contents: []>, <Text Node: ' '>, <Block Node: csscommon. Contents: [<Text Node: ' <link rel="styleshee'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/portal-style.'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'stylesheets/jquery.reject'>]>, <Text Node: ' <link href="'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.qtip.m'>, <Block Node: cssspecial. Contents: []>, <Text Node: ' '>, <Block Node: jscommon. Contents: [<Text Node: ' <!--<script type="te'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery-ui-1.1'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'cytoscapeweb/js/json2.min'>]>, <Text Node: ' '>, <Block Node: jsspecial. Contents: []>, <Text Node: ' <script type="text/j'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/main.js"></sc'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/collapsing_di'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.tables'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.tables'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.jcarou'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.qtip.m'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'javascripts/jquery.reject'>, <Block Node: basewrap. Contents: [<Text Node: '<div id="wrap-no-line">'>]>, <Text Node: ' <div id="header"> '>, <django.template.defaulttags.URLNode object at 0x7f12840ca6d0>, <Text Node: '"><img alt="Logo" src="'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/logo-text.png"></a'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/isb_logo.png"></a>'>, <IfNode>, <Text Node: ' --> <li><a '>, <django.template.defaulttags.URLNode object at 0x7f1284361650>, <Text Node: '">About</a></li> <li><'>, <django.template.defaulttags.URLNode object at 0x7f1284361110>, <Text Node: '">Contact</a></li> <li'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'apidocuments">API</a></li'>, <django.template.defaulttags.LoadNode object at 0x7f1284361fd0>, <Text Node: ' <div id="nav"> '>, <django.template.base.SimpleNode object at 0x7f1284361450>, <Text Node: '"><a href="/">Home</a></l'>, <django.template.base.SimpleNode object at 0x7f127f9ae390>, <Text Node: '"><a href="/search">Searc'>, <django.template.base.SimpleNode object at 0x7f127f9aef10>, <Text Node: '"><a href="/species">Spec'>, <django.template.base.SimpleNode object at 0x7f127f9ae6d0>, <Text Node: '"><a href="/workspace">Wo'>, <IfNode>, <Text Node: ' <li class="'>, <django.template.base.SimpleNode object at 0x7f127f9ae990>, <Text Node: '"><a href="/help/" title='>, <django.template.base.SimpleNode object at 0x7f127f9aead0>, <Text Node: '"><a href="/analysis/gene'>, <Text Node: ' <div id="content">'>, <Block Node: content. Contents: []>, <Text Node: ' </div>'>, <Text Node: ' <div id="footer"> '>, <Block Node: footer. Contents: [<Text Node: ' <!--<a href="ht'>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/kbase-logo.jpg"></'>, <django.template.defaulttags.URLNode object at 0x7f127f9ae150>, <Text Node: '">Development</a> '>, <django.template.defaulttags.URLNode object at 0x7f127f9ae7d0>, <Text Node: '">Home</a></p> '>]>, <Text Node: ' </div>'>, <Text Node: ' <center> '>, <Variable Node: STATIC_PREFIX>, <Text Node: 'images/kbase-logo.jpg"></'>, <Text Node: ' </body> </html> '>] |
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
/usr/lib/python2.7/site-packages/django/template/loader_tags.py
in render
push = block = block_context.pop(self.name)
if block is None:
block = self
# Create new block so we can store context without thread-safety issues.
block = type(self)(block.name, block.nodelist)
block.context = context
context['block'] = block
result = block.nodelist.render(context)...
if push is not None:
block_context.push(self.name, push)
return result
def super(self):
if not hasattr(self, 'context'):
Variable | Value |
---|---|
push | <Block Node: content. Contents: [<Text Node: ' <h5><span class="search_'>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a> '>, <For Node: for network in species.network_set.all, tail_len: 5>, <Text Node: ' </span> </h5> <div id'>, <Variable Node: gene.name>, <Text Node: '</a></li> <li><a cl'>, <Text Node: ' <li><a class="gene'>, <Variable Node: bicluster_pssms>, <Text Node: '; $(document).'>, <Variable Node: gene.bicluster_set.count>, <Text Node: ', "'>, <Variable Node: gene.name>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f1276826bd0>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f1276826f90>, <Text Node: '", '>, <IfNode>, <Text Node: ' var circle'>, <Variable Node: gene.name>, <Text Node: '', succ'>, <Variable Node: preview_motifs>, <Text Node: '); '>, <Variable Node: gene.display_name>, <Text Node: '</h5> <p><span '>, <Variable Node: gene.description>, <Text Node: '</span></p> <d'>, <Variable Node: gene.functions.count>, <Text Node: ')</h5> '>, <IfNode>, <Text Node: ' <!-- <h3'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>, <Text Node: ' </div> <div id='>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a><br/> <st'>, <Variable Node: gene.name>, <Text Node: ' <br/> <stron'>, <Variable Node: gene.geneid>, <Text Node: '">'>, <Variable Node: gene.geneid>, <Text Node: ' (NCBI) </a>, <a href="ht'>, <Variable Node: gene.name>, <Text Node: '">'>, <Variable Node: gene.name>, <Text Node: ' (MicrobesOnline) </a><br'>, <IfNode>, <Text Node: '</i><br/> <h5'>, <IfNode>, <Text Node: ' </table> '>, <IfNode>, <Text Node: '--> </div>'>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f95ac10>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f95a2d0>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f95a090>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f95a350>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f965cd0>, <Text Node: ' </div> <!-- '>, <django.template.loader_tags.IncludeNode object at 0x7f127f965f10>, <Text Node: ' </div> <div '>, <Variable Node: gene.name>, <Text Node: ' </h5> Please add y'>, <Text Node: ' </div>'>, <Text Node: ' <div style="display:n'>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f1284245090>, <Text Node: '" align="right"><br> <u'>, <Text Node: ' '>]> |
block_context | <django.template.loader_tags.BlockContext object at 0x7f12842451d0> |
block | <Block Node: content. Contents: [<Text Node: ' <h5><span class="search_'>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a> '>, <For Node: for network in species.network_set.all, tail_len: 5>, <Text Node: ' </span> </h5> <div id'>, <Variable Node: gene.name>, <Text Node: '</a></li> <li><a cl'>, <Text Node: ' <li><a class="gene'>, <Variable Node: bicluster_pssms>, <Text Node: '; $(document).'>, <Variable Node: gene.bicluster_set.count>, <Text Node: ', "'>, <Variable Node: gene.name>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f1276826bd0>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f1276826f90>, <Text Node: '", '>, <IfNode>, <Text Node: ' var circle'>, <Variable Node: gene.name>, <Text Node: '', succ'>, <Variable Node: preview_motifs>, <Text Node: '); '>, <Variable Node: gene.display_name>, <Text Node: '</h5> <p><span '>, <Variable Node: gene.description>, <Text Node: '</span></p> <d'>, <Variable Node: gene.functions.count>, <Text Node: ')</h5> '>, <IfNode>, <Text Node: ' <!-- <h3'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>, <Text Node: ' </div> <div id='>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a><br/> <st'>, <Variable Node: gene.name>, <Text Node: ' <br/> <stron'>, <Variable Node: gene.geneid>, <Text Node: '">'>, <Variable Node: gene.geneid>, <Text Node: ' (NCBI) </a>, <a href="ht'>, <Variable Node: gene.name>, <Text Node: '">'>, <Variable Node: gene.name>, <Text Node: ' (MicrobesOnline) </a><br'>, <IfNode>, <Text Node: '</i><br/> <h5'>, <IfNode>, <Text Node: ' </table> '>, <IfNode>, <Text Node: '--> </div>'>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f95ac10>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f95a2d0>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f95a090>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f95a350>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f965cd0>, <Text Node: ' </div> <!-- '>, <django.template.loader_tags.IncludeNode object at 0x7f127f965f10>, <Text Node: ' </div> <div '>, <Variable Node: gene.name>, <Text Node: ' </h5> Please add y'>, <Text Node: ' </div>'>, <Text Node: ' <div style="display:n'>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f1284245090>, <Text Node: '" align="right"><br> <u'>, <Text Node: ' '>]> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
self | <Block Node: content. Contents: []> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
# extend_nodelist().
contains_nontext = False
def render(self, context):
bits = []
for node in self:
if isinstance(node, Node):
bit = self.render_node(node, context)...
else:
bit = node
bits.append(force_text(bit))
return mark_safe(''.join(bits))
def get_nodes_by_type(self, nodetype):
Variable | Value |
---|---|
node | <django.template.loader_tags.IncludeNode object at 0x7f127f95a2d0> |
bit | u'\n </div>\n <div id="tab-regulator" class="sub-page">\n ' |
bits | [u'\n<h5><span class="search_help"> Organism : <a href="/', u'gsu', u'">', u'Geobacter sulfurreducens', u'</a>\n | Module List : ', u'\n \t\t\t\t <a href="/gsu/network/1" title="Explore Network"><img align="center" src="/static/images/network.gif"/></a></a>\n \t\t\t\t\t', u'\n </span>\n</h5>\n<div id="bicluster-top">\n <div class="sub-page">\n <div id="tabs" class="sub-page">\n <ul>\n\t <li><a class="name" href="#tab-main">', u'GSU3411', u'</a></li>\n\t <li><a class="network" href="#tab-network">Network</a></li>\n\t <li><a class="regulator" href="#tab-regulator">Regulation</a></li>\n\t <li><a class="motif" href="#tab-motif">Motifs</a></li>\n\t <li><a class="function" href="#tab-function">Functions</a></li>\n\t <li><a class="genes" href="#tab-gene">Module Members</a></li>\n\t ', u'\n\t <li><a class="gene-help" href="#tab-help">Help</a></li>\n\t <li><a class="social" href="#tab-social">Social</a></li>\n </ul>\n <div id="tab-main">\n\t\t <div class="main">\n <script type="text/javascript">\n var django_pssms = ', u'{2488: [[0.666667, 0.166667, 0.166667, 0.0], [0.166667, 0.0, 0.833333, 0.0], [0.0, 0.166667, 0.0, 0.833333], [0.666667, 0.166667, 0.166667, 0.0], [0.166667, 0.833333, 0.0, 0.0], [0.166667, 0.0, 0.833333, 0.0], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.0, 0.0, 1.0], [0.0, 0.0, 1.0, 0.0], [0.5, 0.5, 0.0, 0.0], [0.0, 0.333333, 0.5, 0.166667], [0.0, 0.333333, 0.0, 0.666667], [1.0, 0.0, 0.0, 0.0], [0.0, 0.666667, 0.333333, 0.0], [1.0, 0.0, 0.0, 0.0], [0.833333, 0.0, 0.0, 0.166667], [0.833333, 0.166667, 0.0, 0.0], [0.333333, 0.166667, 0.5, 0.0], [0.166667, 0.0, 0.833333, 0.0], [0.0, 0.833333, 0.166667, 0.0], [0.0, 0.0, 0.0, 1.0]], 2489: [[0.125, 0.0, 0.0, 0.875], [0.0, 0.875, 0.125, 0.0], [0.0, 0.125, 0.125, 0.75], [0.0, 1.0, 0.0, 0.0], [0.625, 0.375, 0.0, 0.0], [0.0, 0.125, 0.5, 0.375], [0.0, 1.0, 0.0, 0.0], [0.0, 0.125, 0.5, 0.375], [0.125, 0.0, 0.75, 0.125], [0.0, 0.75, 0.25, 0.0], [0.0, 0.0, 0.25, 0.75], [0.0, 0.875, 0.125, 0.0], [0.0, 1.0, 0.0, 0.0], [0.125, 0.25, 0.0, 0.625], [0.375, 0.5, 0.0, 0.125], [0.0, 0.875, 0.0, 0.125], [0.0, 0.25, 0.0, 0.75], [0.625, 0.0, 0.0, 0.375], [0.0, 1.0, 0.0, 0.0], [0.25, 0.125, 0.125, 0.5], [0.0, 1.0, 0.0, 0.0]], 2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}', u';\n $(document).ready(function() {\n var loaded = [false, false, false, false, false, false, false, false];\n $(\'#tabs\').tabs({\n // load network and motif tabs on demand\n activate: function (event, ui) {\n var index = $(\'#tabs\').tabs("option", "active");\n if (!loaded[index]) {\n switch (index) {\n case 1:\n var vis = nwhelpers.initNetworkTab(', u'2', u', "', u'GSU3411', u'",\n "', u'/static/cytoscapeweb/swf/CytoscapeWeb', u'",\n "', u'/static/cytoscapeweb/swf/playerProductInstall', u'",\n nwhelpers.load_popup);\n break;\n case 3:\n setTimeout(function() {\n nwhelpers.initCanvas(django_pssms);\n }, 500);\n default:\n break;\n ... <trimmed 9987 bytes string> |
self | [<Text Node: ' <h5><span class="search_'>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a> '>, <For Node: for network in species.network_set.all, tail_len: 5>, <Text Node: ' </span> </h5> <div id'>, <Variable Node: gene.name>, <Text Node: '</a></li> <li><a cl'>, <Text Node: ' <li><a class="gene'>, <Variable Node: bicluster_pssms>, <Text Node: '; $(document).'>, <Variable Node: gene.bicluster_set.count>, <Text Node: ', "'>, <Variable Node: gene.name>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f1276826bd0>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f1276826f90>, <Text Node: '", '>, <IfNode>, <Text Node: ' var circle'>, <Variable Node: gene.name>, <Text Node: '', succ'>, <Variable Node: preview_motifs>, <Text Node: '); '>, <Variable Node: gene.display_name>, <Text Node: '</h5> <p><span '>, <Variable Node: gene.description>, <Text Node: '</span></p> <d'>, <Variable Node: gene.functions.count>, <Text Node: ')</h5> '>, <IfNode>, <Text Node: ' <!-- <h3'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>, <Text Node: ' </div> <div id='>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a><br/> <st'>, <Variable Node: gene.name>, <Text Node: ' <br/> <stron'>, <Variable Node: gene.geneid>, <Text Node: '">'>, <Variable Node: gene.geneid>, <Text Node: ' (NCBI) </a>, <a href="ht'>, <Variable Node: gene.name>, <Text Node: '">'>, <Variable Node: gene.name>, <Text Node: ' (MicrobesOnline) </a><br'>, <IfNode>, <Text Node: '</i><br/> <h5'>, <IfNode>, <Text Node: ' </table> '>, <IfNode>, <Text Node: '--> </div>'>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f95ac10>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f95a2d0>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f95a090>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f95a350>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f965cd0>, <Text Node: ' </div> <!-- '>, <django.template.loader_tags.IncludeNode object at 0x7f127f965f10>, <Text Node: ' </div> <div '>, <Variable Node: gene.name>, <Text Node: ' </h5> Please add y'>, <Text Node: ' </div>'>, <Text Node: ' <div style="display:n'>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f1284245090>, <Text Node: '" align="right"><br> <u'>, <Text Node: ' '>] |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
/usr/lib/python2.7/site-packages/django/template/debug.py
in render_node
if not hasattr(e, 'django_template_source'):
e.django_template_source = token.source
class DebugNodeList(NodeList):
def render_node(self, node, context):
try:
return node.render(context)...
except Exception as e:
if not hasattr(e, 'django_template_source'):
e.django_template_source = node.source
raise
Variable | Value |
---|---|
node | <django.template.loader_tags.IncludeNode object at 0x7f127f95a2d0> |
self | [<Text Node: ' <h5><span class="search_'>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a> '>, <For Node: for network in species.network_set.all, tail_len: 5>, <Text Node: ' </span> </h5> <div id'>, <Variable Node: gene.name>, <Text Node: '</a></li> <li><a cl'>, <Text Node: ' <li><a class="gene'>, <Variable Node: bicluster_pssms>, <Text Node: '; $(document).'>, <Variable Node: gene.bicluster_set.count>, <Text Node: ', "'>, <Variable Node: gene.name>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f1276826bd0>, <Text Node: '", '>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f1276826f90>, <Text Node: '", '>, <IfNode>, <Text Node: ' var circle'>, <Variable Node: gene.name>, <Text Node: '', succ'>, <Variable Node: preview_motifs>, <Text Node: '); '>, <Variable Node: gene.display_name>, <Text Node: '</h5> <p><span '>, <Variable Node: gene.description>, <Text Node: '</span></p> <d'>, <Variable Node: gene.functions.count>, <Text Node: ')</h5> '>, <IfNode>, <Text Node: ' <!-- <h3'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>, <Text Node: ' </div> <div id='>, <Variable Node: gene.species.short_name>, <Text Node: '">'>, <Variable Node: gene.species.name>, <Text Node: '</a><br/> <st'>, <Variable Node: gene.name>, <Text Node: ' <br/> <stron'>, <Variable Node: gene.geneid>, <Text Node: '">'>, <Variable Node: gene.geneid>, <Text Node: ' (NCBI) </a>, <a href="ht'>, <Variable Node: gene.name>, <Text Node: '">'>, <Variable Node: gene.name>, <Text Node: ' (MicrobesOnline) </a><br'>, <IfNode>, <Text Node: '</i><br/> <h5'>, <IfNode>, <Text Node: ' </table> '>, <IfNode>, <Text Node: '--> </div>'>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f95ac10>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f95a2d0>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f95a090>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f95a350>, <Text Node: ' </div> <div '>, <django.template.loader_tags.IncludeNode object at 0x7f127f965cd0>, <Text Node: ' </div> <!-- '>, <django.template.loader_tags.IncludeNode object at 0x7f127f965f10>, <Text Node: ' </div> <div '>, <Variable Node: gene.name>, <Text Node: ' </h5> Please add y'>, <Text Node: ' </div>'>, <Text Node: ' <div style="display:n'>, <django.contrib.staticfiles.templatetags.staticfiles.StaticFilesNode object at 0x7f1284245090>, <Text Node: '" align="right"><br> <u'>, <Text Node: ' '>] |
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
/usr/lib/python2.7/site-packages/django/template/loader_tags.py
in render
values = {
name: var.resolve(context)
for name, var in six.iteritems(self.extra_context)
}
if self.isolated_context:
return template.render(context.new(values))
with context.push(**values):
return template.render(context)...
except Exception:
if context.template.engine.debug:
raise
return ''
Variable | Value |
---|---|
self | <django.template.loader_tags.IncludeNode object at 0x7f127f95a2d0> |
values | {} |
template | <django.template.base.Template object at 0x7f128c30d410> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
"Display stage -- can be called many times"
context.render_context.push()
try:
if context.template is None:
with context.bind_template(self):
return self._render(context)
else:
return self._render(context)...
finally:
context.render_context.pop()
class Token(object):
def __init__(self, token_type, contents):
Variable | Value |
---|---|
self | <django.template.base.Template object at 0x7f128c30d410> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in _render
def __iter__(self):
for node in self.nodelist:
for subnode in node:
yield subnode
def _render(self, context):
return self.nodelist.render(context)...
def render(self, context):
"Display stage -- can be called many times"
context.render_context.push()
try:
if context.template is None:
Variable | Value |
---|---|
self | <django.template.base.Template object at 0x7f128c30d410> |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in render
# extend_nodelist().
contains_nontext = False
def render(self, context):
bits = []
for node in self:
if isinstance(node, Node):
bit = self.render_node(node, context)...
else:
bit = node
bits.append(force_text(bit))
return mark_safe(''.join(bits))
def get_nodes_by_type(self, nodetype):
Variable | Value |
---|---|
node | <Variable Node: influence_biclusters|influences_to_gene_description_map> |
bit | u' </h5> <span class="search_help">(Mouseover regulator name to see its description)</span> \n<p>\n<div class="tab-contents">\n <script type="text/javascript">\n $(document).ready(function() {\n ' |
bits | [u'', u'\n', u'', u'\n<a class="help" href="#regulation"><img align="right" src="/static/images/help.png" /></a>\n<h5> Regulation information for ', u'GSU3411', u' </h5> <span class="search_help">(Mouseover regulator name to see its description)</span> \n<p>\n<div class="tab-contents">\n <script type="text/javascript">\n $(document).ready(function() {\n '] |
self | [<django.template.defaulttags.LoadNode object at 0x7f128423ead0>, <Text Node: ' '>, <django.template.defaulttags.LoadNode object at 0x7f1284637150>, <Text Node: ' <a class="help" href="#r'>, <Variable Node: gene>, <Text Node: ' </h5> <span class="searc'>, <Variable Node: influence_biclusters|influences_to_gene_description_map>, <Text Node: '; $('.reggene').o'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>] |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
/usr/lib/python2.7/site-packages/django/template/debug.py
in render_node
if not hasattr(e, 'django_template_source'):
e.django_template_source = token.source
class DebugNodeList(NodeList):
def render_node(self, node, context):
try:
return node.render(context)...
except Exception as e:
if not hasattr(e, 'django_template_source'):
e.django_template_source = node.source
raise
Variable | Value |
---|---|
node | <Variable Node: influence_biclusters|influences_to_gene_description_map> |
self | [<django.template.defaulttags.LoadNode object at 0x7f128423ead0>, <Text Node: ' '>, <django.template.defaulttags.LoadNode object at 0x7f1284637150>, <Text Node: ' <a class="help" href="#r'>, <Variable Node: gene>, <Text Node: ' </h5> <span class="searc'>, <Variable Node: influence_biclusters|influences_to_gene_description_map>, <Text Node: '; $('.reggene').o'>, <IfNode>, <Text Node: ' '>, <IfNode>, <Text Node: ' </div> </div> '>] |
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
/usr/lib/python2.7/site-packages/django/template/debug.py
in render
e.django_template_source = node.source
raise
class DebugVariableNode(VariableNode):
def render(self, context):
try:
output = self.filter_expression.resolve(context)...
output = template_localtime(output, use_tz=context.use_tz)
output = localize(output, use_l10n=context.use_l10n)
output = force_text(output)
except UnicodeDecodeError:
return ''
except Exception as e:
Variable | Value |
---|---|
self | <Variable Node: influence_biclusters|influences_to_gene_description_map> |
e | TypeError('coercing to Unicode: need string or buffer, NoneType found',) |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
/usr/lib/python2.7/site-packages/django/template/base.py
in resolve
else:
arg_vals.append(arg.resolve(context))
if getattr(func, 'expects_localtime', False):
obj = template_localtime(obj, context.use_tz)
if getattr(func, 'needs_autoescape', False):
new_obj = func(obj, autoescape=context.autoescape, *arg_vals)
else:
new_obj = func(obj, *arg_vals)...
if getattr(func, 'is_safe', False) and isinstance(obj, SafeData):
obj = mark_safe(new_obj)
elif isinstance(obj, EscapeData):
obj = mark_for_escaping(new_obj)
else:
obj = new_obj
Variable | Value |
---|---|
obj | [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)] |
context | [{'False': False, 'None': None, 'True': True}, {'key': u'cog', 'influence_biclusters': [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)], 'count_regulated_biclusters': 0, 'motif_id': 2723, 'species': <Species: Geobacter sulfurreducens>, 'pssms': {2722: [[0.0, 0.0, 1.0, 0.0], [0.111111, 0.0, 0.666667, 0.222222], [0.0, 0.111111, 0.888889, 0.0], [0.0, 0.111111, 0.888889, 0.0], [0.333333, 0.666667, 0.0, 0.0], [0.0, 0.0, 0.111111, 0.888889], [0.222222, 0.0, 0.0, 0.777778], [0.777778, 0.111111, 0.111111, 0.0], [1.0, 0.0, 0.0, 0.0], [0.111111, 0.0, 0.888889, 0.0], [0.222222, 0.0, 0.666667, 0.111111]], 2723: [[1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.333333, 0.333333, 0.333333], [0.0, 0.0, 0.666667, 0.333333], [0.0, 0.333333, 0.333333, 0.333333], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 0.0, 0.0, 1.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, 1.0, 0.0], [0.0, 1.0, 0.0, 0.0]]}, 'functions': [<Function: Function: COG0210, Superfamily I DNA and RNA helicases, cog, cog>], 'network': <Network: Geobacter_sulfurreducens network>, 'system': {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}, 'preview_motifs': [2488, 2722], 'systems': [{'functions': [u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0003677">GO:0003677</a>) DNA binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0004003">GO:0004003</a>) ATP-dependent DNA helicase activity', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0005524">GO:0005524</a>) ATP binding', u'(<a href="http://amigo.geneontology.org/cgi-bin/amigo/term_details?term=GO:0006281">GO:0006281</a>) DNA repair'], 'name': 'GO Gene Ontology'}, {'functions': [u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03420">path:03420</a>) Nucleotide excision repair', u'(<a href="http://www.genome.jp/kegg-bin/show_pathway?map03430">path:03430</a>) Mismatch repair'], 'name': 'KEGG Pathways'}, {'functions': [u'(<a href="http://www.ncbi.nlm.nih.gov/COG/grace/wiew.cgi?COG0210">COG0210</a>) Superfamily I DNA and RNA helicases'], 'name': 'COG Clusters of Orthologous Groups'}], 'motifs': [<Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>, <Motif: Motif object>], 'neighbor_genes': [<Gene: GSU0059>, <Gene: GSU0064>, <Gene: GSU0072>, <Gene: GSU0226>, <Gene: GSU0227>, <Gene: GSU0457>, <Gene: GSU0458>, <Gene: GSU0524>, <Gene: GSU0526>, <Gene: GSU0527>, <Gene: GSU0528>, <Gene: GSU0530>, <Gene: GSU0532>, <Gene: GSU0541>, <Gene: GSU0571>, <Gene: GSU0582>, <Gene: GSU0841>, <Gene: GSU0854>, <Gene: GSU0858>, <Gene: GSU0890>, <Gene: GSU0932>, <Ge... <trimmed 7424 bytes string> |
arg_vals | [] |
self | <django.template.base.FilterExpression object at 0x7f1284637050> |
args | [] |
ignore_failures | False |
func | <function influences_to_gene_description_map at 0x7f128c27b050> |
/local/apache-stuff/network_portal/web_app/networks/templatetags/filters.py
in influences_to_gene_description_map
# note that parts might not be a gene - could be environmental factor
for part in influence.parts.all():
# print "part=%s" % (str(part),)
if part.gene:
gene_description_map[part.name] = part.gene.description.strip()
result = 'var descriptionMap = {}\n';
for key, description in gene_description_map.items():
result += 'descriptionMap[\'' + key + '\'] = "' + description + '";\n';...
#print "# descriptions: ", len(gene_description_map)
return mark_safe(result);
@register.filter
def motif1consensus(bicluster):
Variable | Value |
---|---|
description | None |
influence | <Influence: GSU3421> |
influence_biclusters | [(<Bicluster: Bicluster 281>, <Influence: GSU0164>), (<Bicluster: Bicluster 281>, <Influence: GSU0514>), (<Bicluster: Bicluster 281>, <Influence: GSU0625>), (<Bicluster: Bicluster 281>, <Influence: GSU0732>), (<Bicluster: Bicluster 281>, <Influence: GSU0735>), (<Bicluster: Bicluster 281>, <Influence: GSU0776>), (<Bicluster: Bicluster 281>, <Influence: GSU0836>), (<Bicluster: Bicluster 281>, <Influence: GSU1072>), (<Bicluster: Bicluster 281>, <Influence: GSU1270>), (<Bicluster: Bicluster 281>, <Influence: GSU1428>), (<Bicluster: Bicluster 281>, <Influence: GSU1989>), (<Bicluster: Bicluster 281>, <Influence: GSU2716>), (<Bicluster: Bicluster 281>, <Influence: GSU3108>), (<Bicluster: Bicluster 281>, <Influence: GSU3217>), (<Bicluster: Bicluster 164>, <Influence: GSU0164>), (<Bicluster: Bicluster 164>, <Influence: GSU0267>), (<Bicluster: Bicluster 164>, <Influence: GSU0470>), (<Bicluster: Bicluster 164>, <Influence: GSU0598>), (<Bicluster: Bicluster 164>, <Influence: GSU0776>), (<Bicluster: Bicluster 164>, <Influence: GSU1687>), (<Bicluster: Bicluster 164>, <Influence: GSU1989>), (<Bicluster: Bicluster 164>, <Influence: GSU2041>), (<Bicluster: Bicluster 164>, <Influence: GSU2523>), (<Bicluster: Bicluster 164>, <Influence: GSU2809>), (<Bicluster: Bicluster 164>, <Influence: GSU3060>), (<Bicluster: Bicluster 164>, <Influence: GSU3421>)] |
result | u'var descriptionMap = {}\ndescriptionMap[\'GSU0470\'] = "sigma-54 dependent response regulator (VIMSS)";\ndescriptionMap[\'GSU2716\'] = "sugar fermentation stimulation protein (NCBI)";\ndescriptionMap[\'GSU0625\'] = "hypothetical protein (VIMSS)";\ndescriptionMap[\'GSU3060\'] = "transcriptional regulator, TetR family (VIMSS)";\ndescriptionMap[\'GSU1989\'] = "sigma-54 dependent DNA-binding response regulator (VIMSS)";\ndescriptionMap[\'GSU1270\'] = "pyrimidine operon regulatory protein PyrR (NCBI)";\ndescriptionMap[\'GSU0164\'] = "conserved hypothetical protein (VIMSS)";\ndescriptionMap[\'GSU2809\'] = "transcriptional regulator, Fur family (VIMSS)";\ndescriptionMap[\'GSU0735\'] = "PTS system IIA component, fructose subfamily (VIMSS)";\ndescriptionMap[\'GSU0732\'] = "nucleoside diphosphate kinase regulator protein, putative (VIMSS)";\ndescriptionMap[\'GSU2041\'] = "sigma-54 dependent DNA-binding response regulator (VIMSS)";\ndescriptionMap[\'GSU0776\'] = "sigma-54 dependent DNA-binding response regulator (VIMSS)";\ndescriptionMap[\'GSU0514\'] = "transcriptional regulator, IclR family (VIMSS)";\n' |
key | u'GSU1428' |
bicluster_id | <Bicluster: Bicluster 164> |
gene_description_map | {u'GSU0164': u'conserved hypothetical protein (VIMSS)', u'GSU0267': u'transcriptional regulator, GntR family (VIMSS)', u'GSU0470': u'sigma-54 dependent response regulator (VIMSS)', u'GSU0514': u'transcriptional regulator, IclR family (VIMSS)', u'GSU0598': u'sigma-54 dependent DNA-binding response regulator (VIMSS)', u'GSU0625': u'hypothetical protein (VIMSS)', u'GSU0732': u'nucleoside diphosphate kinase regulator protein, putative (VIMSS)', u'GSU0735': u'PTS system IIA component, fructose subfamily (VIMSS)', u'GSU0776': u'sigma-54 dependent DNA-binding response regulator (VIMSS)', u'GSU0836': u'nucleoside diphosphate kinase regulator protein, putative (VIMSS)', u'GSU1072': u'transcriptional regulator, IclR family (VIMSS)', u'GSU1270': u'pyrimidine operon regulatory protein PyrR (NCBI)', u'GSU1428': None, u'GSU1687': u'ATP cone domain protein (NCBI)', u'GSU1989': u'sigma-54 dependent DNA-binding response regulator (VIMSS)', u'GSU2041': u'sigma-54 dependent DNA-binding response regulator (VIMSS)', u'GSU2523': u'transcriptional regulator, LysR family (VIMSS)', u'GSU2716': u'sugar fermentation stimulation protein (NCBI)', u'GSU2809': u'transcriptional regulator, Fur family (VIMSS)', u'GSU3060': u'transcriptional regulator, TetR family (VIMSS)', u'GSU3108': u'transcription termination factor Rho (NCBI)', u'GSU3217': u'sigma-54 dependent DNA-binding response regulator (VIMSS)', u'GSU3421': u'transcriptional regulator, Crp/Fnr family (VIMSS)'} |
No GET data
No POST data
No FILES data
No cookie data
Variable | Value |
---|---|
mod_wsgi.listener_port | '443' |
HTTP_REFERER | 'http://networks.systemsbiology.net/gsu/gene/GSU3411' |
CONTEXT_DOCUMENT_ROOT | '/local/apache-stuff/network_portal' |
SERVER_SOFTWARE | 'Apache' |
SCRIPT_NAME | u'' |
mod_wsgi.enable_sendfile | '0' |
mod_wsgi.handler_script | '' |
SERVER_SIGNATURE | '' |
REQUEST_METHOD | 'GET' |
PATH_INFO | u'/gsu/gene/GSU3411' |
SERVER_PROTOCOL | 'HTTP/1.1' |
QUERY_STRING | '' |
HTTP_X_REAL_IP | '44.220.131.93' |
HTTP_USER_AGENT | 'claudebot' |
HTTP_CONNECTION | 'close' |
SERVER_NAME | 'networks.systemsbiology.net' |
REMOTE_ADDR | '10.3.0.181' |
mod_wsgi.queue_start | '1711652844915379' |
mod_wsgi.request_handler | 'wsgi-script' |
wsgi.url_scheme | 'https' |
PATH_TRANSLATED | '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py/gsu/gene/GSU3411' |
SERVER_PORT | '443' |
wsgi.multiprocess | True |
mod_wsgi.input_chunked | '0' |
SERVER_ADDR | '10.2.8.50' |
DOCUMENT_ROOT | '/local/apache-stuff/network_portal' |
mod_wsgi.process_group | 'networks-ssl' |
HTTP_X_FORWARDED_PROTO | 'https' |
SCRIPT_FILENAME | '/local/apache-stuff/network_portal/web_app/nwportal/wsgi.py' |
SERVER_ADMIN | 'root@localhost' |
wsgi.input | <mod_wsgi.Input object at 0x7f127f941b70> |
HTTP_HOST | 'networks.systemsbiology.net' |
CONTEXT_PREFIX | '' |
wsgi.multithread | True |
mod_wsgi.callable_object | 'application' |
REQUEST_URI | '/gsu/gene/GSU3411' |
HTTP_ACCEPT | '*/*' |
wsgi.version | (1, 0) |
GATEWAY_INTERFACE | 'CGI/1.1' |
HTTP_X_FORWARDED_FOR | '44.220.131.93' |
wsgi.errors | <mod_wsgi.Log object at 0x7f127f941f70> |
REMOTE_PORT | '36724' |
mod_wsgi.listener_host | '' |
REQUEST_SCHEME | 'https' |
mod_wsgi.version | (3, 4) |
wsgi.run_once | False |
mod_wsgi.application_group | '' |
mod_wsgi.script_reloading | '1' |
wsgi.file_wrapper | '' |
CSRF_COOKIE | u'5qsupuBrPef81Z7AUUOSWbPO4jecuBpS' |
UNIQUE_ID | 'ZgW-7DxeZOV3-UNaonqM0AAAAAA' |
nwportal.settings.production
Setting | Value |
---|---|
SECURE_BROWSER_XSS_FILTER | False |
TIME_ZONE | 'America/Vancouver' |
CSRF_COOKIE_SECURE | False |
LANGUAGE_CODE | 'en-us' |
ROOT_URLCONF | 'nwportal.urls' |
MANAGERS | () |
KBASE_UJS_SERVICE_URL | 'https://kbase.us/services/userandjobstate' |
SILENCED_SYSTEM_CHECKS | [] |
DEFAULT_CHARSET | 'utf-8' |
SESSION_SERIALIZER | 'django.contrib.sessions.serializers.PickleSerializer' |
STATIC_ROOT | '/local/htdocs/nwportal' |
USERDATA_ROOT | '/local/nwportaluserdata' |
USE_THOUSAND_SEPARATOR | False |
ALLOWED_HOSTS | [] |
MESSAGE_STORAGE | 'django.contrib.messages.storage.fallback.FallbackStorage' |
EMAIL_SUBJECT_PREFIX | '[Django] ' |
SERVER_EMAIL | 'root@localhost' |
SECURE_HSTS_SECONDS | 0 |
STATICFILES_FINDERS | ('django.contrib.staticfiles.finders.FileSystemFinder', 'django.contrib.staticfiles.finders.AppDirectoriesFinder') |
SESSION_CACHE_ALIAS | 'default' |
SESSION_COOKIE_DOMAIN | None |
SESSION_COOKIE_NAME | 'sessionid' |
ORGANISM_SERVICE_HOST | 'http://condor:5000' |
TIME_INPUT_FORMATS | ('%H:%M:%S', '%H:%M:%S.%f', '%H:%M') |
SECURE_REDIRECT_EXEMPT | [] |
DATABASES | {'default': {'ATOMIC_REQUESTS': False, 'AUTOCOMMIT': True, 'CONN_MAX_AGE': 0, 'ENGINE': 'django.db.backends.postgresql_psycopg2', 'HOST': '', 'NAME': 'network_portal', 'OPTIONS': {}, 'PASSWORD': u'********************', 'PORT': '', 'TEST': {'CHARSET': None, 'COLLATION': None, 'MIRROR': None, 'NAME': None}, 'TIME_ZONE': 'UTC', 'USER': 'dj_ango'}} |
EMAIL_SSL_KEYFILE | u'********************' |
FILE_UPLOAD_DIRECTORY_PERMISSIONS | None |
FILE_UPLOAD_PERMISSIONS | None |
FILE_UPLOAD_HANDLERS | ('django.core.files.uploadhandler.MemoryFileUploadHandler', 'django.core.files.uploadhandler.TemporaryFileUploadHandler') |
TEMPLATE_CONTEXT_PROCESSORS | ('django.contrib.auth.context_processors.auth', 'django.core.context_processors.request', 'django.core.context_processors.static', 'django.core.context_processors.debug', 'django.contrib.messages.context_processors.messages') |
DEFAULT_CONTENT_TYPE | 'text/html' |
APPEND_SLASH | True |
FIRST_DAY_OF_WEEK | 0 |
DATABASE_ROUTERS | [] |
DEFAULT_TABLESPACE | '' |
YEAR_MONTH_FORMAT | 'F Y' |
STATICFILES_STORAGE | 'django.contrib.staticfiles.storage.StaticFilesStorage' |
CACHES | {'default': {'BACKEND': 'django.core.cache.backends.locmem.LocMemCache'}} |
SESSION_COOKIE_PATH | '/' |
SECURE_CONTENT_TYPE_NOSNIFF | False |
MIDDLEWARE_CLASSES | ('django.middleware.csrf.CsrfViewMiddleware', 'django.middleware.common.CommonMiddleware', 'django.contrib.sessions.middleware.SessionMiddleware', 'django.middleware.csrf.CsrfViewMiddleware', 'django.contrib.auth.middleware.AuthenticationMiddleware', 'django.contrib.messages.middleware.MessageMiddleware') |
KBASE_USER | '' |
THOUSAND_SEPARATOR | ',' |
SECRET_KEY | u'********************' |
LANGUAGE_COOKIE_NAME | 'django_language' |
DEFAULT_INDEX_TABLESPACE | '' |
LOGGING_CONFIG | 'logging.config.dictConfig' |
TEMPLATE_LOADERS | ('django.template.loaders.filesystem.Loader', 'django.template.loaders.app_directories.Loader') |
WSGI_APPLICATION | None |
TEMPLATE_DEBUG | True |
X_FRAME_OPTIONS | 'SAMEORIGIN' |
AUTHENTICATION_BACKENDS | ('social_core.backends.google.GoogleOAuth2', 'django.contrib.auth.backends.ModelBackend') |
SOCIAL_AUTH_GOOGLE_OAUTH2_SECRET | u'********************' |
FORCE_SCRIPT_NAME | None |
USE_X_FORWARDED_HOST | False |
EMAIL_TIMEOUT | None |
SECURE_SSL_HOST | None |
SIGNING_BACKEND | 'django.core.signing.TimestampSigner' |
SESSION_COOKIE_SECURE | False |
CSRF_COOKIE_DOMAIN | None |
FILE_CHARSET | 'utf-8' |
DEBUG | True |
LANGUAGE_COOKIE_DOMAIN | None |
DEFAULT_FILE_STORAGE | 'django.core.files.storage.FileSystemStorage' |
INSTALLED_APPS | ('django.contrib.auth', 'django.contrib.contenttypes', 'django.contrib.sessions', 'django.contrib.sites', 'django.contrib.messages', 'django.contrib.staticfiles', 'django.contrib.humanize', 'django.contrib.admin', 'social_django', 'networks', 'inference', 'nwpadmin', 'search') |
LANGUAGES | (('af', 'Afrikaans'), ('ar', 'Arabic'), ('ast', 'Asturian'), ('az', 'Azerbaijani'), ('bg', 'Bulgarian'), ('be', 'Belarusian'), ('bn', 'Bengali'), ('br', 'Breton'), ('bs', 'Bosnian'), ('ca', 'Catalan'), ('cs', 'Czech'), ('cy', 'Welsh'), ('da', 'Danish'), ('de', 'German'), ('el', 'Greek'), ('en', 'English'), ('en-au', 'Australian English'), ('en-gb', 'British English'), ('eo', 'Esperanto'), ('es', 'Spanish'), ('es-ar', 'Argentinian Spanish'), ('es-mx', 'Mexican Spanish'), ('es-ni', 'Nicaraguan Spanish'), ('es-ve', 'Venezuelan Spanish'), ('et', 'Estonian'), ('eu', 'Basque'), ('fa', 'Persian'), ('fi', 'Finnish'), ('fr', 'French'), ('fy', 'Frisian'), ('ga', 'Irish'), ('gl', 'Galician'), ('he', 'Hebrew'), ('hi', 'Hindi'), ('hr', 'Croatian'), ('hu', 'Hungarian'), ('ia', 'Interlingua'), ('id', 'Indonesian'), ('io', 'Ido'), ('is', 'Icelandic'), ('it', 'Italian'), ('ja', 'Japanese'), ('ka', 'Georgian'), ('kk', 'Kazakh'), ('km', 'Khmer'), ('kn', 'Kannada'), ('ko', 'Korean'), ('lb', 'Luxembourgish'), ('lt', 'Lithuanian'), ('lv', 'Latvian'), ('mk', 'Macedonian'), ('ml', 'Malayalam'), ('mn', 'Mongolian'), ('mr', 'Marathi'), ('my', 'Burmese'), ('nb', 'Norwegian Bokmal'), ('ne', 'Nepali'), ('nl', 'Dutch'), ('nn', 'Norwegian Nynorsk'), ('os', 'Ossetic'), ('pa', 'Punjabi'), ('pl', 'Polish'), ('pt', 'Portuguese'), ('pt-br', 'Brazilian Portuguese'), ('ro', 'Romanian'), ('ru', 'Russian'), ('sk', 'Slovak'), ('sl', 'Slovenian'), ('sq', 'Albanian'), ('sr', 'Serbian'), ('sr-latn', 'Serbian Latin'), ('sv', 'Swedish'), ('sw', 'Swahili'), ('ta', 'Tamil'), ('te', 'Telugu'), ('th', 'Thai'), ('tr', 'Turkish'), ('tt', 'Tatar'), ('udm', 'Udmurt'), ('uk', 'Ukrainian'), ('ur', 'Urdu'), ('vi', 'Vietnamese'), ('zh-cn', 'Simplified Chinese'), ('zh-hans', 'Simplified Chinese'), ('zh-hant', 'Traditional Chinese'), ('zh-tw', 'Traditional Chinese')) |
USE_L10N | True |
SECURE_HSTS_INCLUDE_SUBDOMAINS | False |
STATICFILES_DIRS | ('/local/apache-stuff/network_portal/web_app/static',) |
PREPEND_WWW | False |
SECURE_PROXY_SSL_HEADER | None |
LANGUAGE_COOKIE_AGE | None |
KBASE_DATA_WORKSPACE | 'nwportal:nwportal_data' |
KBASE_INF_SERVICE_URL | 'http://140.221.67.196:7113' |
DEBUG_PROPAGATE_EXCEPTIONS | False |
KBASE_PASSWD | u'********************' |
MONTH_DAY_FORMAT | 'F j' |
LOGIN_URL | '/accounts/login/' |
SESSION_EXPIRE_AT_BROWSER_CLOSE | False |
SOCIAL_AUTH_GOOGLE_OAUTH2_KEY | u'********************' |
TIME_FORMAT | 'P' |
AUTH_USER_MODEL | 'auth.User' |
DATE_INPUT_FORMATS | ('%Y-%m-%d', '%m/%d/%Y', '%m/%d/%y', '%b %d %Y', '%b %d, %Y', '%d %b %Y', '%d %b, %Y', '%B %d %Y', '%B %d, %Y', '%d %B %Y', '%d %B, %Y') |
CSRF_COOKIE_NAME | 'csrftoken' |
EMAIL_HOST_PASSWORD | u'********************' |
PASSWORD_RESET_TIMEOUT_DAYS | u'********************' |
SESSION_FILE_PATH | None |
CACHE_MIDDLEWARE_ALIAS | 'default' |
SESSION_SAVE_EVERY_REQUEST | False |
ADMIN_MEDIA_PREFIX | '/static/admin/' |
NUMBER_GROUPING | 0 |
SESSION_ENGINE | 'django.contrib.sessions.backends.db' |
CSRF_FAILURE_VIEW | 'django.views.csrf.csrf_failure' |
CSRF_COOKIE_PATH | '/' |
LOGIN_REDIRECT_URL | '/accounts/profile/' |
KBASE_WS_SERVICE_URL | 'https://kbase.us/services/ws' |
PROJECT_ROOT | '/local/apache-stuff/network_portal/web_app/nwportal/settings/../..' |
DECIMAL_SEPARATOR | '.' |
IGNORABLE_404_URLS | () |
LOCALE_PATHS | () |
TEMPLATE_STRING_IF_INVALID | '' |
SOCIAL_AUTH_URL_NAMESPACE | 'social' |
SOLR_SELECT_MODULES | 'http://localhost:8983/solr/nwportal_adv/select/' |
LOGOUT_URL | '/accounts/logout/' |
EMAIL_USE_TLS | False |
SOLR_SUGGEST | 'http://localhost:8983/solr/nwportal/suggest/?wt=json&json.wrf=?' |
FIXTURE_DIRS | () |
EMAIL_HOST | 'localhost' |
DATE_FORMAT | 'N j, Y' |
MEDIA_ROOT | '' |
KBASE_CMRESULTS_WORKSPACE | 'nwportal:cmtestresults' |
DEFAULT_EXCEPTION_REPORTER_FILTER | 'django.views.debug.SafeExceptionReporterFilter' |
ADMINS | () |
FORMAT_MODULE_PATH | None |
DEFAULT_FROM_EMAIL | 'webmaster@localhost' |
MEDIA_URL | '' |
DATETIME_FORMAT | 'N j, Y, P' |
TEMPLATE_DIRS | ('/local/apache-stuff/network_portal/web_app/templates', '/local/apache-stuff/network_portal/web_app/networks/templates') |
SITE_ID | 1 |
DISALLOWED_USER_AGENTS | () |
ALLOWED_INCLUDE_ROOTS | () |
USE_I18N | True |
CMONKEY_RABBITMQ | u'********************' |
LOGGING | {'disable_existing_loggers': False, 'handlers': {'mail_admins': {'class': 'django.utils.log.AdminEmailHandler', 'level': 'ERROR'}}, 'loggers': {'django.request': {'handlers': ['mail_admins'], 'level': 'ERROR', 'propagate': True}}, 'version': 1} |
SHORT_DATE_FORMAT | 'm/d/Y' |
TEMPLATES | [] |
TEST_RUNNER | 'django.test.runner.DiscoverRunner' |
CACHE_MIDDLEWARE_KEY_PREFIX | u'********************' |
SECURE_SSL_REDIRECT | False |
KBASE_CM_SERVICE_URL | 'http://140.221.67.196:7112' |
SOLR_SELECT_GENES | 'http://localhost:8983/solr/nwportal/select/' |
FILE_UPLOAD_MAX_MEMORY_SIZE | 2621440 |
EMAIL_BACKEND | 'django.core.mail.backends.smtp.EmailBackend' |
CSRF_COOKIE_AGE | 31449600 |
EMAIL_USE_SSL | False |
SESSION_COOKIE_HTTPONLY | True |
MIGRATION_MODULES | {} |
SESSION_COOKIE_AGE | 1209600 |
SETTINGS_MODULE | 'nwportal.settings.production' |
USE_ETAGS | False |
LANGUAGES_BIDI | ('he', 'ar', 'fa', 'ur') |
FILE_UPLOAD_TEMP_DIR | None |
INTERNAL_IPS | () |
STATIC_URL | '/static/' |
EMAIL_PORT | 25 |
USE_TZ | True |
SHORT_DATETIME_FORMAT | 'm/d/Y P' |
TEST_NON_SERIALIZED_APPS | [] |
PASSWORD_HASHERS | u'********************' |
ABSOLUTE_URL_OVERRIDES | {} |
LANGUAGE_COOKIE_PATH | '/' |
CACHE_MIDDLEWARE_SECONDS | 600 |
EMAIL_SSL_CERTFILE | None |
CSRF_COOKIE_HTTPONLY | False |
DATETIME_INPUT_FORMATS | ('%Y-%m-%d %H:%M:%S', '%Y-%m-%d %H:%M:%S.%f', '%Y-%m-%d %H:%M', '%Y-%m-%d', '%m/%d/%Y %H:%M:%S', '%m/%d/%Y %H:%M:%S.%f', '%m/%d/%Y %H:%M', '%m/%d/%Y', '%m/%d/%y %H:%M:%S', '%m/%d/%y %H:%M:%S.%f', '%m/%d/%y %H:%M', '%m/%d/%y') |
EMAIL_HOST_USER | '' |
You're seeing this error because you have DEBUG = True
in your
Django settings file. Change that to False
, and Django will
display a standard page generated by the handler for this status code.