Genes
Species: Halobacterium salinarum NRC-1
transcription factors: 125
Name | Common name | Type | Gene ID | Chromosome | Start | End | Strand | Description | TF |
---|---|---|---|---|---|---|---|---|---|
VNG0019H | CDS | 1446965 | chromosome | 15310 | 15408 | + | hypothetical protein VNG0019H | True | |
VNG0039H | CDS | 1446984 | chromosome | 32555 | 32890 | - | hypothetical protein VNG0039H | True | |
VNG0040C | CDS | 1446985 | chromosome | 33182 | 33628 | - | hypothetical protein VNG0040C | True | |
VNG0066H | CDS | 1447009 | chromosome | 64976 | 65206 | + | hypothetical protein VNG0066H | True | |
VNG0101G | cspD1 | CDS | 1447033 | chromosome | 84617 | 84841 | - | cold shock protein | True |
VNG0142C | CDS | 1447071 | chromosome | 117867 | 118271 | - | hypothetical protein VNG0142C | True | |
VNG0147C | CDS | 1447075 | chromosome | 119759 | 120226 | - | hypothetical protein VNG0147C | True | |
VNG0156C | CDS | 1447083 | chromosome | 127692 | 128390 | + | hypothetical protein VNG0156C | True | |
VNG0160G | boa1 | CDS | 1447087 | chromosome | 132683 | 135277 | + | bacterio-opsin activator-like protein | True |
VNG0176H | CDS | 1447099 | chromosome | 151875 | 152615 | - | hypothetical protein VNG0176H | True | |
VNG0194H | CDS | 1447113 | chromosome | 166336 | 166503 | - | hypothetical protein VNG0194H | True | |
VNG0247C | CDS | 1447153 | chromosome | 201609 | 202517 | + | hypothetical protein VNG0247C | True | |
VNG0254G | tfbG | CDS | 1447159 | chromosome | 208286 | 209257 | - | transcription initiation factor IIB | True |
VNG0258H | CDS | 1447162 | chromosome | 210639 | 210989 | - | hypothetical protein VNG0258H | True | |
VNG0293H | CDS | 1447185 | chromosome | 232683 | 232952 | - | hypothetical protein VNG0293H | True | |
VNG0315G | tfbF | CDS | 1447201 | chromosome | 247008 | 247967 | - | transcription initiation factor IIB | True |
VNG0320H | CDS | 1447205 | chromosome | 251273 | 251884 | - | hypothetical protein VNG0320H | True | |
VNG0374G | nusG | CDS | 1447240 | chromosome | 291994 | 292431 | - | transcription antitermination protein NusG | True |
VNG0389C | CDS | 1447250 | chromosome | 300938 | 301228 | - | hypothetical protein VNG0389C | True | |
VNG0424C | nac | CDS | 1447276 | chromosome | 328415 | 328807 | + | nascent polypeptide-associated complex protein | True |
VNG0451G | phoU | CDS | 1447298 | chromosome | 347367 | 347990 | - | hypothetical protein VNG0451G | True |
VNG0458G | prp1 | CDS | 1447303 | chromosome | 352883 | 353887 | + | phosphate regulatory protein-like protein | True |
VNG0462C | CDS | 1447306 | chromosome | 356605 | 356889 | - | hypothetical protein VNG0462C | True | |
VNG0471C | CDS | 1447313 | chromosome | 364276 | 364476 | - | hypothetical protein VNG0471C | True | |
VNG0511H | CDS | 1447346 | chromosome | 395657 | 395887 | + | hypothetical protein VNG0511H | True | |
VNG0530G | troR | CDS | 1447358 | chromosome | 409159 | 409593 | + | hypothetical protein VNG0530G | True |
VNG0536G | sirR | CDS | 1447364 | chromosome | 412713 | 413414 | - | transcription repressor | True |
VNG0591C | CDS | 1447406 | chromosome | 450957 | 451601 | - | hypothetical protein VNG0591C | True | |
VNG0651G | imd1 | CDS | 1447455 | chromosome | 497085 | 497903 | + | inosine-5'-monophosphate dehydrogenase | True |
VNG0654C | CDS | 1447458 | chromosome | 499989 | 500732 | - | hypothetical protein VNG0654C | True | |
VNG0703H | CDS | 1447494 | chromosome | 531750 | 532034 | + | hypothetical protein VNG0703H | True | |
VNG0704C | CDS | 1447495 | chromosome | 532038 | 532409 | - | hypothetical protein VNG0704C | True | |
VNG0726C | CDS | 1447511 | chromosome | 546988 | 547578 | - | hypothetical protein VNG0726C | True | |
VNG0734G | tfbB | CDS | 1447518 | chromosome | 553409 | 554386 | - | transcription initiation factor IIB | True |
VNG0751C | CDS | 1447532 | chromosome | 569022 | 569336 | + | hypothetical protein VNG0751C | True | |
VNG0757G | tfeA | CDS | 1447537 | chromosome | 573224 | 573769 | + | transcription initiation factor IIE alpha subunit | True |
VNG0766G | prp2 | CDS | 1447545 | chromosome | 578203 | 579231 | + | phosphate regulatory protein-like protein | True |
VNG0826C | CDS | 1447590 | chromosome | 626458 | 627132 | + | hypothetical protein VNG0826C | True | |
VNG0835G | idr2 | CDS | 1447597 | chromosome | 633600 | 633962 | - | iron-dependent repressor-like protein | True |
VNG0852C | CDS | 1447608 | chromosome | 645426 | 646076 | + | hypothetical protein VNG0852C | True | |
VNG0869G | tfbD | CDS | 1447620 | chromosome | 656539 | 657525 | - | transcription initiation factor IIB | True |
VNG0890G | imd2 | CDS | 1447634 | chromosome | 676676 | 677209 | + | inosine-5'-monophosphate dehydrogenase | True |
VNG0917G | hrg | CDS | 1447653 | chromosome | 696355 | 696996 | - | Hrg | True |
VNG0996G | boa4 | CDS | 1447715 | chromosome | 760682 | 762487 | + | bacterio-opsin activator-like protein | True |
VNG1029C | CDS | 1447742 | chromosome | 787221 | 787760 | - | hypothetical protein VNG1029C | True | |
VNG1071G | cinR | CDS | 1447775 | chromosome | 820841 | 821197 | - | transcription repressor | True |
VNG1096H | CDS | 1447794 | chromosome | 840223 | 840531 | - | hypothetical protein VNG1096H | True | |
VNG1123Gm | TRH7 | CDS | 1449036 | chromosome | 855154 | 855582 | - | transcription regulator | True |
VNG1179C | CDS | 1447855 | chromosome | 888617 | 889327 | - | hypothetical protein VNG1179C | True | |
VNG1215G | pai1 | CDS | 1447882 | chromosome | 916393 | 916875 | - | sporulation regulator-like protein | True |
VNG1237C | CDS | 1447899 | chromosome | 931821 | 932303 | + | hypothetical protein VNG1237C | True | |
VNG1285G | trh2 | CDS | 1447935 | chromosome | 964009 | 964770 | - | transcription regulator | True |
VNG1351G | trh6 | CDS | 1447983 | chromosome | 1006932 | 1007417 | + | transcription regulator | True |
VNG1377G | asnC | CDS | 1448002 | chromosome | 1026961 | 1027410 | - | transcription regulator | True |
VNG1383G | rad3a | CDS | 1448008 | chromosome | 1030786 | 1033188 | + | helicase | True |
VNG1390H | CDS | 1448015 | chromosome | 1036408 | 1036719 | + | hypothetical protein VNG1390H | True | |
VNG1398C | CDS | 1448019 | chromosome | 1040466 | 1040909 | - | hypothetical protein VNG1398C | True | |
VNG1405C | CDS | 1448023 | chromosome | 1042533 | 1042907 | - | hypothetical protein VNG1405C | True | |
VNG1426H | CDS | 1448039 | chromosome | 1060839 | 1061117 | + | hypothetical protein VNG1426H | True | |
VNG1451C | CDS | 1448056 | chromosome | 1074878 | 1075960 | + | hypothetical protein VNG1451C | True | |
VNG1464G | bat | CDS | 1448068 | chromosome | 1085495 | 1087519 | - | bacterio-opsin activator | True |
VNG1483C | CDS | 1448085 | chromosome | 1103741 | 1104244 | - | hypothetical protein VNG1483C | True | |
VNG1488G | boa2 | CDS | 1448089 | chromosome | 1106448 | 1107095 | + | bacterio-opsin activator-like protein | True |
VNG1490H | CDS | 1448090 | chromosome | 1107155 | 1107559 | + | hypothetical protein VNG1490H | True | |
VNG1496G | snp | CDS | 1448095 | chromosome | 1110410 | 1110619 | - | snRNP-like protein | True |
VNG1508C | CDS | 1448103 | chromosome | 1119763 | 1121874 | - | hypothetical protein VNG1508C | True | |
VNG1510C | CDS | 1448104 | chromosome | 1121952 | 1123601 | - | hypothetical protein VNG1510C | True | |
VNG1548C | CDS | 1448133 | chromosome | 1155952 | 1156764 | - | hypothetical protein VNG1548C | True | |
VNG1616C | CDS | 1448177 | chromosome | 1204670 | 1205479 | - | hypothetical protein VNG1616C | True | |
VNG1617H | CDS | 1448178 | chromosome | 1205478 | 1205966 | + | hypothetical protein VNG1617H | True | |
VNG1776G | nirH | CDS | 1448301 | chromosome | 1315383 | 1316441 | - | heme biosynthesis protein | True |
VNG1786H | CDS | 1448309 | chromosome | 1323053 | 1323331 | - | hypothetical protein VNG1786H | True | |
VNG1816G | trh3 | CDS | 1448330 | chromosome | 1344157 | 1344570 | + | transcription regulator | True |
VNG1836G | cspD2 | CDS | 1448345 | chromosome | 1356243 | 1356452 | + | cold shock protein | True |
VNG1843C | CDS | 1448350 | chromosome | 1360326 | 1360982 | + | hypothetical protein VNG1843C | True | |
VNG1845C | CDS | 1448352 | chromosome | 1362289 | 1363230 | + | hypothetical protein VNG1845C | True | |
VNG1886C | CDS | 1448383 | chromosome | 1394134 | 1394925 | - | hypothetical protein VNG1886C | True | |
VNG1899G | kaiC | CDS | 1448393 | chromosome | 1405118 | 1405774 | - | KaiC | True |
VNG1903Cm | CDS | 1449057 | chromosome | 1409286 | 1410086 | - | transcription regulator | True | |
VNG1911G | nirD | CDS | 1448403 | chromosome | 1414027 | 1415064 | - | heme biosynthesis protein | True |
VNG1922G | trh5 | CDS | 1448413 | chromosome | 1419958 | 1420185 | - | transcription regulator | True |
VNG2020C | CDS | 1448488 | chromosome | 1492979 | 1493509 | - | hypothetical protein VNG2020C | True | |
VNG2036G | hlx1 | CDS | 1448501 | chromosome | 1502096 | 1502665 | - | Hlx1 | True |
VNG2094G | trh4 | CDS | 1448543 | chromosome | 1538241 | 1538705 | + | transcription regulator | True |
VNG2112C | CDS | 1448558 | chromosome | 1551547 | 1552377 | + | hypothetical protein VNG2112C | True | |
VNG2126C | CDS | 1448570 | chromosome | 1564023 | 1564751 | - | hypothetical protein VNG2126C | True | |
VNG2163H | CDS | 1448601 | chromosome | 1595672 | 1596076 | + | hypothetical protein VNG2163H | True | |
VNG2184G | tfbA | CDS | 1448622 | chromosome | 1617647 | 1618510 | - | transcription initiation factor IIB | True |
VNG2243G | tbpE | CDS | 1448667 | chromosome | 1670410 | 1670970 | + | transcription factor | True |
VNG2268H | CDS | 1448685 | chromosome | 1685552 | 1685743 | - | hypothetical protein VNG2268H | True | |
VNG2277H | CDS | 1448694 | chromosome | 1695463 | 1695795 | - | hypothetical protein VNG2277H | True | |
VNG2441G | rad3b | CDS | 1448823 | chromosome | 1831314 | 1833512 | - | helicase | True |
VNG2445C | CDS | 1448827 | chromosome | 1835158 | 1835790 | - | hypothetical protein VNG2445C | True | |
VNG2476C | CDS | 1448850 | chromosome | 1853446 | 1855077 | - | hypothetical protein VNG2476C | True | |
VNG2522C | CDS | 1448888 | chromosome | 1890170 | 1890721 | - | hypothetical protein VNG2522C | True | |
VNG2579G | idr1 | CDS | 1448931 | chromosome | 1933811 | 1934248 | - | iron-dependent repressor-like protein | True |
VNG2614H | CDS | 1448958 | chromosome | 1954955 | 1955227 | + | hypothetical protein VNG2614H | True | |
VNG2629G | glcK | CDS | 1448970 | chromosome | 1967776 | 1968756 | - | glucose kinase | True |
VNG2641H | CDS | 1448980 | chromosome | 1978824 | 1979123 | - | hypothetical protein VNG2641H | True | |
VNG2647G | vacB | CDS | 1448986 | chromosome | 1982832 | 1984121 | + | hypothetical protein VNG2647G | True |
VNG2661G | nusA | CDS | 1448996 | chromosome | 1994139 | 1994558 | - | transcription elongation factor NusA-like protein | True |
VNG2675C | CDS | 1449005 | chromosome | 2006920 | 2007438 | - | hypothetical protein VNG2675C | True | |
VNG5050H | cds | - | pNRC100 | 39504 | 39785 | + | predicted transcriptional regulator; PFAM03551:PadR/MarR family of transcriptional repressors; COG1695:predicted transcriptional regulators (PET=28) | True | |
VNG5130H | cds | - | pNRC100 | 91734 | 92042 | + | putative transcriptional regulator PadR family; COG1695:predicted transcriptional regulator; PF03551:PadR/marR family of transcriptional repressors; Rosetta predicts B-globin fold | True | |
VNG6143H | CDS | 1449316 | pNRC200 | 114208 | 118026 | - | hypothetical protein VNG6143H | True | |
VNG6193H | CDS | 1449106 | pNRC200 | 161733 | 162011 | - | hypothetical protein VNG6193H | True | |
VNG6239G | gvpE2 | CDS | 1449141 | pNRC200 | 189529 | 190110 | - | GvpE protein, cluster B | True |
VNG6287H | CDS | 1449173 | pNRC200 | 219970 | 220194 | + | hypothetical protein VNG6287H | True | |
VNG6288C | CDS | 1449174 | pNRC200 | 220233 | 220511 | + | hypothetical protein VNG6288C | True | |
VNG6318G | arcR | CDS | 1449197 | pNRC200 | 248466 | 249257 | - | transcription regulator | True |
VNG6351G | tfbC | CDS | 1449350 | pNRC200 | 282126 | 283079 | - | transcription initiation factor IIB | True |
VNG6387H | CDS | 1449376 | pNRC200 | 307015 | 307326 | - | hypothetical protein VNG6387H | True | |
VNG6389G | tfbE | CDS | 1449377 | pNRC200 | 307399 | 308322 | - | transcription initiation factor IIB | True |
VNG6438G | tbpF | CDS | 1449409 | pNRC200 | 329788 | 330348 | + | transcription factor | True |
VNG7007 | CDS | 1446809 | pNRC100 | 4614 | 4811 | + | hypothetical protein VNG7007 | True | |
VNG7023 | gvpE | CDS | 1446783 | pNRC100 | 20095 | 20670 | - | gas vesicle protein GvpE | True |
VNG7031 | CDS | 1446818 | pNRC100 | 30044 | 30346 | + | hypothetical protein VNG7031 | True | |
VNG7048 | CDS | 1446832 | pNRC100 | 49236 | 50012 | - | hypothetical protein VNG7048 | True | |
VNG7053 | CDS | 1446837 | pNRC100 | 53918 | 54322 | + | hypothetical protein VNG7053 | True | |
VNG7100 | tbpC | CDS | 1446797 | pNRC100 | 111987 | 112532 | + | transcription factor | True |
VNG7102 | CDS | 1446881 | pNRC100 | 114461 | 114742 | + | hypothetical protein VNG7102 | True | |
VNG7112 | CDS | 1446890 | pNRC100 | 126536 | 126928 | + | hypothetical protein VNG7112 | True | |
VNG7114 | tbpD | CDS | 1446799 | pNRC100 | 128346 | 128906 | - | transcription factor | True |
VNG7122 | CDS | 1446899 | pNRC100 | 136700 | 137059 | - | hypothetical protein VNG7122 | True | |
VNG7125 | arsR | CDS | 1446802 | pNRC100 | 140392 | 140781 | + | arsenical resistance operon repressor | True |