Genes

Species: Halobacterium salinarum NRC-1
transcription factors: 125

Name Common name Type Gene ID Chromosome Start End Strand Description TF
VNG0019H CDS 1446965 chromosome 15310 15408 + hypothetical protein VNG0019H True
VNG0039H CDS 1446984 chromosome 32555 32890 - hypothetical protein VNG0039H True
VNG0040C CDS 1446985 chromosome 33182 33628 - hypothetical protein VNG0040C True
VNG0066H CDS 1447009 chromosome 64976 65206 + hypothetical protein VNG0066H True
VNG0101G cspD1 CDS 1447033 chromosome 84617 84841 - cold shock protein True
VNG0142C CDS 1447071 chromosome 117867 118271 - hypothetical protein VNG0142C True
VNG0147C CDS 1447075 chromosome 119759 120226 - hypothetical protein VNG0147C True
VNG0156C CDS 1447083 chromosome 127692 128390 + hypothetical protein VNG0156C True
VNG0160G boa1 CDS 1447087 chromosome 132683 135277 + bacterio-opsin activator-like protein True
VNG0176H CDS 1447099 chromosome 151875 152615 - hypothetical protein VNG0176H True
VNG0194H CDS 1447113 chromosome 166336 166503 - hypothetical protein VNG0194H True
VNG0247C CDS 1447153 chromosome 201609 202517 + hypothetical protein VNG0247C True
VNG0254G tfbG CDS 1447159 chromosome 208286 209257 - transcription initiation factor IIB True
VNG0258H CDS 1447162 chromosome 210639 210989 - hypothetical protein VNG0258H True
VNG0293H CDS 1447185 chromosome 232683 232952 - hypothetical protein VNG0293H True
VNG0315G tfbF CDS 1447201 chromosome 247008 247967 - transcription initiation factor IIB True
VNG0320H CDS 1447205 chromosome 251273 251884 - hypothetical protein VNG0320H True
VNG0374G nusG CDS 1447240 chromosome 291994 292431 - transcription antitermination protein NusG True
VNG0389C CDS 1447250 chromosome 300938 301228 - hypothetical protein VNG0389C True
VNG0424C nac CDS 1447276 chromosome 328415 328807 + nascent polypeptide-associated complex protein True
VNG0451G phoU CDS 1447298 chromosome 347367 347990 - hypothetical protein VNG0451G True
VNG0458G prp1 CDS 1447303 chromosome 352883 353887 + phosphate regulatory protein-like protein True
VNG0462C CDS 1447306 chromosome 356605 356889 - hypothetical protein VNG0462C True
VNG0471C CDS 1447313 chromosome 364276 364476 - hypothetical protein VNG0471C True
VNG0511H CDS 1447346 chromosome 395657 395887 + hypothetical protein VNG0511H True
VNG0530G troR CDS 1447358 chromosome 409159 409593 + hypothetical protein VNG0530G True
VNG0536G sirR CDS 1447364 chromosome 412713 413414 - transcription repressor True
VNG0591C CDS 1447406 chromosome 450957 451601 - hypothetical protein VNG0591C True
VNG0651G imd1 CDS 1447455 chromosome 497085 497903 + inosine-5'-monophosphate dehydrogenase True
VNG0654C CDS 1447458 chromosome 499989 500732 - hypothetical protein VNG0654C True
VNG0703H CDS 1447494 chromosome 531750 532034 + hypothetical protein VNG0703H True
VNG0704C CDS 1447495 chromosome 532038 532409 - hypothetical protein VNG0704C True
VNG0726C CDS 1447511 chromosome 546988 547578 - hypothetical protein VNG0726C True
VNG0734G tfbB CDS 1447518 chromosome 553409 554386 - transcription initiation factor IIB True
VNG0751C CDS 1447532 chromosome 569022 569336 + hypothetical protein VNG0751C True
VNG0757G tfeA CDS 1447537 chromosome 573224 573769 + transcription initiation factor IIE alpha subunit True
VNG0766G prp2 CDS 1447545 chromosome 578203 579231 + phosphate regulatory protein-like protein True
VNG0826C CDS 1447590 chromosome 626458 627132 + hypothetical protein VNG0826C True
VNG0835G idr2 CDS 1447597 chromosome 633600 633962 - iron-dependent repressor-like protein True
VNG0852C CDS 1447608 chromosome 645426 646076 + hypothetical protein VNG0852C True
VNG0869G tfbD CDS 1447620 chromosome 656539 657525 - transcription initiation factor IIB True
VNG0890G imd2 CDS 1447634 chromosome 676676 677209 + inosine-5'-monophosphate dehydrogenase True
VNG0917G hrg CDS 1447653 chromosome 696355 696996 - Hrg True
VNG0996G boa4 CDS 1447715 chromosome 760682 762487 + bacterio-opsin activator-like protein True
VNG1029C CDS 1447742 chromosome 787221 787760 - hypothetical protein VNG1029C True
VNG1071G cinR CDS 1447775 chromosome 820841 821197 - transcription repressor True
VNG1096H CDS 1447794 chromosome 840223 840531 - hypothetical protein VNG1096H True
VNG1123Gm TRH7 CDS 1449036 chromosome 855154 855582 - transcription regulator True
VNG1179C CDS 1447855 chromosome 888617 889327 - hypothetical protein VNG1179C True
VNG1215G pai1 CDS 1447882 chromosome 916393 916875 - sporulation regulator-like protein True
VNG1237C CDS 1447899 chromosome 931821 932303 + hypothetical protein VNG1237C True
VNG1285G trh2 CDS 1447935 chromosome 964009 964770 - transcription regulator True
VNG1351G trh6 CDS 1447983 chromosome 1006932 1007417 + transcription regulator True
VNG1377G asnC CDS 1448002 chromosome 1026961 1027410 - transcription regulator True
VNG1383G rad3a CDS 1448008 chromosome 1030786 1033188 + helicase True
VNG1390H CDS 1448015 chromosome 1036408 1036719 + hypothetical protein VNG1390H True
VNG1398C CDS 1448019 chromosome 1040466 1040909 - hypothetical protein VNG1398C True
VNG1405C CDS 1448023 chromosome 1042533 1042907 - hypothetical protein VNG1405C True
VNG1426H CDS 1448039 chromosome 1060839 1061117 + hypothetical protein VNG1426H True
VNG1451C CDS 1448056 chromosome 1074878 1075960 + hypothetical protein VNG1451C True
VNG1464G bat CDS 1448068 chromosome 1085495 1087519 - bacterio-opsin activator True
VNG1483C CDS 1448085 chromosome 1103741 1104244 - hypothetical protein VNG1483C True
VNG1488G boa2 CDS 1448089 chromosome 1106448 1107095 + bacterio-opsin activator-like protein True
VNG1490H CDS 1448090 chromosome 1107155 1107559 + hypothetical protein VNG1490H True
VNG1496G snp CDS 1448095 chromosome 1110410 1110619 - snRNP-like protein True
VNG1508C CDS 1448103 chromosome 1119763 1121874 - hypothetical protein VNG1508C True
VNG1510C CDS 1448104 chromosome 1121952 1123601 - hypothetical protein VNG1510C True
VNG1548C CDS 1448133 chromosome 1155952 1156764 - hypothetical protein VNG1548C True
VNG1616C CDS 1448177 chromosome 1204670 1205479 - hypothetical protein VNG1616C True
VNG1617H CDS 1448178 chromosome 1205478 1205966 + hypothetical protein VNG1617H True
VNG1776G nirH CDS 1448301 chromosome 1315383 1316441 - heme biosynthesis protein True
VNG1786H CDS 1448309 chromosome 1323053 1323331 - hypothetical protein VNG1786H True
VNG1816G trh3 CDS 1448330 chromosome 1344157 1344570 + transcription regulator True
VNG1836G cspD2 CDS 1448345 chromosome 1356243 1356452 + cold shock protein True
VNG1843C CDS 1448350 chromosome 1360326 1360982 + hypothetical protein VNG1843C True
VNG1845C CDS 1448352 chromosome 1362289 1363230 + hypothetical protein VNG1845C True
VNG1886C CDS 1448383 chromosome 1394134 1394925 - hypothetical protein VNG1886C True
VNG1899G kaiC CDS 1448393 chromosome 1405118 1405774 - KaiC True
VNG1903Cm CDS 1449057 chromosome 1409286 1410086 - transcription regulator True
VNG1911G nirD CDS 1448403 chromosome 1414027 1415064 - heme biosynthesis protein True
VNG1922G trh5 CDS 1448413 chromosome 1419958 1420185 - transcription regulator True
VNG2020C CDS 1448488 chromosome 1492979 1493509 - hypothetical protein VNG2020C True
VNG2036G hlx1 CDS 1448501 chromosome 1502096 1502665 - Hlx1 True
VNG2094G trh4 CDS 1448543 chromosome 1538241 1538705 + transcription regulator True
VNG2112C CDS 1448558 chromosome 1551547 1552377 + hypothetical protein VNG2112C True
VNG2126C CDS 1448570 chromosome 1564023 1564751 - hypothetical protein VNG2126C True
VNG2163H CDS 1448601 chromosome 1595672 1596076 + hypothetical protein VNG2163H True
VNG2184G tfbA CDS 1448622 chromosome 1617647 1618510 - transcription initiation factor IIB True
VNG2243G tbpE CDS 1448667 chromosome 1670410 1670970 + transcription factor True
VNG2268H CDS 1448685 chromosome 1685552 1685743 - hypothetical protein VNG2268H True
VNG2277H CDS 1448694 chromosome 1695463 1695795 - hypothetical protein VNG2277H True
VNG2441G rad3b CDS 1448823 chromosome 1831314 1833512 - helicase True
VNG2445C CDS 1448827 chromosome 1835158 1835790 - hypothetical protein VNG2445C True
VNG2476C CDS 1448850 chromosome 1853446 1855077 - hypothetical protein VNG2476C True
VNG2522C CDS 1448888 chromosome 1890170 1890721 - hypothetical protein VNG2522C True
VNG2579G idr1 CDS 1448931 chromosome 1933811 1934248 - iron-dependent repressor-like protein True
VNG2614H CDS 1448958 chromosome 1954955 1955227 + hypothetical protein VNG2614H True
VNG2629G glcK CDS 1448970 chromosome 1967776 1968756 - glucose kinase True
VNG2641H CDS 1448980 chromosome 1978824 1979123 - hypothetical protein VNG2641H True
VNG2647G vacB CDS 1448986 chromosome 1982832 1984121 + hypothetical protein VNG2647G True
VNG2661G nusA CDS 1448996 chromosome 1994139 1994558 - transcription elongation factor NusA-like protein True
VNG2675C CDS 1449005 chromosome 2006920 2007438 - hypothetical protein VNG2675C True
VNG5050H cds - pNRC100 39504 39785 + predicted transcriptional regulator; PFAM03551:PadR/MarR family of transcriptional repressors; COG1695:predicted transcriptional regulators (PET=28) True
VNG5130H cds - pNRC100 91734 92042 + putative transcriptional regulator PadR family; COG1695:predicted transcriptional regulator; PF03551:PadR/marR family of transcriptional repressors; Rosetta predicts B-globin fold True
VNG6143H CDS 1449316 pNRC200 114208 118026 - hypothetical protein VNG6143H True
VNG6193H CDS 1449106 pNRC200 161733 162011 - hypothetical protein VNG6193H True
VNG6239G gvpE2 CDS 1449141 pNRC200 189529 190110 - GvpE protein, cluster B True
VNG6287H CDS 1449173 pNRC200 219970 220194 + hypothetical protein VNG6287H True
VNG6288C CDS 1449174 pNRC200 220233 220511 + hypothetical protein VNG6288C True
VNG6318G arcR CDS 1449197 pNRC200 248466 249257 - transcription regulator True
VNG6351G tfbC CDS 1449350 pNRC200 282126 283079 - transcription initiation factor IIB True
VNG6387H CDS 1449376 pNRC200 307015 307326 - hypothetical protein VNG6387H True
VNG6389G tfbE CDS 1449377 pNRC200 307399 308322 - transcription initiation factor IIB True
VNG6438G tbpF CDS 1449409 pNRC200 329788 330348 + transcription factor True
VNG7007 CDS 1446809 pNRC100 4614 4811 + hypothetical protein VNG7007 True
VNG7023 gvpE CDS 1446783 pNRC100 20095 20670 - gas vesicle protein GvpE True
VNG7031 CDS 1446818 pNRC100 30044 30346 + hypothetical protein VNG7031 True
VNG7048 CDS 1446832 pNRC100 49236 50012 - hypothetical protein VNG7048 True
VNG7053 CDS 1446837 pNRC100 53918 54322 + hypothetical protein VNG7053 True
VNG7100 tbpC CDS 1446797 pNRC100 111987 112532 + transcription factor True
VNG7102 CDS 1446881 pNRC100 114461 114742 + hypothetical protein VNG7102 True
VNG7112 CDS 1446890 pNRC100 126536 126928 + hypothetical protein VNG7112 True
VNG7114 tbpD CDS 1446799 pNRC100 128346 128906 - transcription factor True
VNG7122 CDS 1446899 pNRC100 136700 137059 - hypothetical protein VNG7122 True
VNG7125 arsR CDS 1446802 pNRC100 140392 140781 + arsenical resistance operon repressor True