Organism : Methanococcus maripaludis S2 | Module List :
Regulation information for MMP1587(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 6 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for MMP1587
Module neighborhood information for MMP1587
|Gene||Common Name||Description||Module membership|
|MMP0019||hypothetical protein MMP0019||14, 104, 142|
|MMP0021||hypothetical protein MMP0021||14, 142|
|MMP0056||cofH||FO synthase subunit 2||14, 139|
|MMP0080||glutamate synthase large subunit||7, 60|
|MMP0099||major facilitator transporter||14, 92|
|MMP0124||membrane-bound metal-dependent hydrolase||14, 67|
|MMP0125||flpA||fibrillarin-like protein||14, 104|
|MMP0126||bioB||biotin synthase||14, 104|
|MMP0152||citrate transporter||14, 139|
|MMP0222||hypothetical protein MMP0222||14, 122, 157|
|MMP0282||purE||phosphoribosylaminoimidazole carboxylase catalytic subunit||7, 140|
|MMP0285||TrkA-N domain-containing protein||80, 86|
|MMP0287||CBS domain-containing protein||80, 86|
|MMP0308||SirA family protein||7, 78|
|MMP0318||ilvD||dihydroxy-acid dehydratase||7, 40|
|MMP0326||metG||methionyl-tRNA synthetase||7, 40|
|MMP0345||hypothetical protein MMP0345||7, 70|
|MMP0346||2-hydroxyglutaryl-CoA dehydratase subunit D-like protein||7, 140|
|MMP0349||2-hydroxyglutaryl-CoA dehydratase subunit A-like protein||15, 80|
|MMP0350||hexapeptide repeat-containing transferase||80, 96|
|MMP0351||aspB-like1||DegT/DnrJ/EryC1/StrS aminotransferase||38, 80|
|MMP0352||putative oxidoreductase||38, 80, 162|
|MMP0353||UDP-glucose/GDP-mannose dehydrogenase-like protein||80, 139|
|MMP0354||putative oligosaccharide transporter||80, 95|
|MMP0356||group 1 glycosyl transferase||80, 139, 140|
|MMP0359||glycosyl transferase family protein||7, 78|
|MMP0381||3-isopropylmalate dehydratase small subunit||78, 80|
|MMP0398||hypothetical protein MMP0398||70, 80, 87|
|MMP0401||metE||methionine synthase||4, 15, 80|
|MMP0408||H+-transporting two-sector ATPase subunit A||7, 40|
|MMP0428||vanadium nitrogenase-associated-like protein N||14, 68|
|MMP0539||leuB||multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase||7, 8|
|MMP0541||serB||phosphoserine phosphatase SerB||7, 40, 139, 140|
|MMP0666||Na/Pi-cotransporter II-like protein||7, 115|
|MMP0696||proS||prolyl-tRNA synthetase||7, 60|
|MMP0705||wbpI||UDP-N-acetylglucosamine 2-epimerase||80, 140|
|MMP0708||hypothetical protein MMP0708||7, 40|
|MMP0893||pyrG||CTP synthetase||7, 60|
|MMP0895||hypothetical protein MMP0895||14, 104|
|MMP0905||hypothetical protein MMP0905||14, 149|
|MMP0907||transcriptional regulator TrmB||14, 149|
|MMP0911||iron-sulfur flavoprotein||38, 80|
|MMP0920||ahcY||S-adenosyl-L-homocysteine hydrolase||80, 141|
|MMP0947||hisG||ATP phosphoribosyltransferase||7, 40|
|MMP1018||cimA||(R)-citramalate synthase||7, 27|
|MMP1024||MCE family-like protein||14, 47, 157|
|MMP1048||hypothetical protein MMP1048||14, 25|
|MMP1080||group 1 glycosyl transferase||14, 142|
|MMP1089||polysaccharide biosynthesis protein||14, 70|
|MMP1094||ppsA||phosphoenolpyruvate synthase||38, 80|
|MMP1103||hypothetical protein MMP1103||14, 38|
|MMP1105||sucC||succinate-CoA ligase (ADP-forming), beta chain||7, 81, 137|
|MMP1117||hypothetical protein MMP1117||14, 47, 52, 139|
|MMP1143||hypothetical protein MMP1143||14, 47|
|MMP1146||purF||amidophosphoribosyltransferase||7, 60, 137, 143|
|MMP1175||hypothetical protein MMP1175||14, 136|
|MMP1262||hypothetical protein MMP1262||14, 151|
|MMP1266||glutamyl-tRNA(Gln) amidotransferase subunit D||7, 40, 68|
|MMP1286||DNA primase||80, 162|
|MMP1287||hypothetical protein MMP1287||14, 47, 80|
|MMP1288||UbiD family decarboxylase||47, 80|
|MMP1315||korG||2-oxoglutarate ferredoxin oxidoreductase subunit gamma||7, 80|
|MMP1316||korB||2-oxoglutarate ferredoxin oxidoreductase subunit beta||7, 120, 137|
|MMP1348||bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase||14, 47|
|MMP1350||radical SAM domain-containing protein||14, 47, 104|
|MMP1352||ribulose-1,5-biphosphate synthetase||7, 8, 78|
|MMP1373||purP||5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase||14, 35|
|MMP1438||hypothetical protein MMP1438||14, 140|
|MMP1470||pdfA||prefoldin subunit alpha||7, 111|
|MMP1491||trzA||amidohydrolase||14, 111, 122, 149|
|MMP1492||pyrE||orotate phosphoribosyltransferase||14, 149|
|MMP1499||hypothetical protein MMP1499||14, 139|
|MMP1521||hypothetical protein MMP1521||14, 111, 122, 157|
|MMP1587||hypothetical protein MMP1587||7, 14, 80|
|MMP1588||serA||D-3-phosphoglycerate dehydrogenase||7, 8, 27, 77|
|MMP1589||carA||carbamoyl phosphate synthase small subunit||7, 78|
|MMP1615||hypothetical protein MMP1615||7, 112|
|MMP1648||hypothetical protein MMP1648||14, 47, 52, 139|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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