Bicluster 28 (zzz

GENES 2867:::H37Ra..7H9.shake.replicate.1 2867:::H37Ra..7H9.shake.replicate.2 2867:::H37Rv..7H9.shake.replicate.2 2867:::H37Rv..Dubos.media.replicate.3 2885:::Strain.1254...replicate.2 2885:::Strain.1843..replicate.4 2885:::Strain.9700665..replicate.1 2885:::Strain.M3061a..replicate.1 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.1 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.3 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.6 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.05.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.2 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.3 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.4 4082:::H37Rv.wild.type.Vs.Rv3676.null.1 4082:::H37Rv.wild.type.Vs.Rv3676.null.3 4082:::H37Rv.wild.type.Vs.Rv3676.null.4 4082:::H37Rv.wild.type.Vs.Rv3676.null.5 4082:::Rv3676.null.Vs.H37Rv.wild.type.1 4082:::Rv3676.null.Vs.H37Rv.wild.type.3 4082:::Rv3676.null.Vs.H37Rv.wild.type.4 4082:::Rv3676.null.Vs.H37Rv.wild.type.5 4084:::High.iron.wt.vs.high.iron.ideR.KO.1a 4084:::High.iron.wt.vs.high.iron.ideR.KO.2b 4084:::High.iron.wt.vs.high.iron.ideR.KO.3a 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.5 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.6 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.2 4099:::H37Rv.hypoxia.2hr.rep.5 4101:::H37Rv.Day.0.rep.2 4101:::H37Rv.Day24.2 4101:::NRP.Day12..1 4107:::pH4.8vspH6.8..5.5h. 4107:::pH5.2vspH6.8..11h. 4107:::pH5.2vspH6.8..5.5h. 4107:::WT.t.0h.WT.t.6h..1 4107:::WT.t.0h.WT.t.6h..2 4107:::X.109..10ug.mL..vs.DMSO..12h..replicate.1..GEO.acc..GSM28053. 4107:::X0.1mMGSNO.10ug.mLmdvsDMSO.6hA 4107:::X0.2mg.mL.AmpvsEtOH..6hB 4107:::X0.2ug.mL.RifvsDMSO..6h 4107:::X0.32ug.mL.CervsEtOH..6h 4107:::X10ug.mL.CapvsEtOH..6h 4107:::X10ug.mL.Nvb.DMSO..6h..1 4107:::X130ug.mL.TLMvsDMSO..6h 4107:::X1ug.mL..111891.DMSO..12h..2 4107:::X20ug.mL.ethambutol.DMSO 4107:::X20ug.mL.Prcp.6778.DMSO..6h..1 4107:::X20ug.mL.Procept.6776vsDMSO..6h 4107:::X20ug.mLProcept6778vsDMSO.6h 4107:::X25ug.mL.CPZvsDMSO..6h.B 4107:::X2mM.DTTvsDMSO..6h.A 4107:::X2ug.mL..111895vsDMSO..6h 4107:::X2ug.mL..111895vsDMSO..6hA 4107:::X2ug.mL.PA824.DMSO..6h..2 4107:::X4mM.H2O2vsctrl..4h. 4107:::X50ug.mL.RoxvsEtOH..6hA 4107:::X50ug.mLAntimycinAvsDMSO..6hB 4107:::X5ug.mLProcept.6778vsDMSO.6h 4107:::X9ug.mLAscidideminNpvsDMSO.6hA 4363:::H37Rv.hypoxia.1.day.rep.6 4363:::H37Rv.hypoxia.4.day.rep.3 4363:::H37Rv.hypoxia.4.day.rep.7 4363:::H37Rv.hypoxia.4hr.rep.4 4364:::H37dosR.mutant.hypoxia.1.day.rep.4 4364:::H37dosR.mutant.hypoxia.1.day.rep.6 4364:::H37dosR.mutant.hypoxia.4hr.rep.4 4365:::H37Rv.diamide.1h.rep.2 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.3 4396:::H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.3 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.2 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep2 4583:::X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.1 4583:::X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.2 4583:::X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1 4615:::AA_10uM_10min_01 4615:::AA_30uM_10.min_06 4615:::AA_30uM_10.min_07 4615:::AA_30uM_10min_02 4615:::AA_30uM_10min_03 4615:::AA_30uM_1h_08 4615:::AA_30uM_24.AA_30uM_1h_01 4615:::AA_30uM_24h.AA_60uM_1h_01 4615:::AA_30uM_2h_01 4615:::AA_30uM_30min_01 4615:::AA_30uM_30min_02 4615:::AA_30uM_30min_04 4615:::AA_30uM_30min_07 4615:::AA_30uM_4h_03 4615:::AA_30uM_4h_05 4615:::AA_60uM_2h_T0_03 4615:::Acetate.3mM.10m.03 4615:::Acetate.3mM.10m.05 4615:::CK_LA_2h 4615:::CK.4h.for.AA.NA.0.03mM 4615:::CK.4h.for.OA.NA.0.05mM 4615:::CK.AA.2h 4615:::ETYA_30uM_10min.04 4615:::Glucose_40mM_1h.OA_50uM_10min 4615:::L2A_30uM_10min_01 4615:::L2A_30uM_10min_07 4615:::L2A_30uM_1h_01 4615:::L2A_30uM_2h_01 4615:::L2A_30uM_2h_04 4615:::L2A_30uM_30min_07 4615:::L2A_30uM_4h_05 4615:::LAA_50uM_10min_01 4615:::MDA_1254.pMV261_01 4615:::MDA_1254.pMV261_02 4615:::MDA_1254.pMV261_03 4615:::MDA_1254.pMV261.3524_02 4615:::MDA_1254.pMV261.3524_04 4615:::MDG_1254.pMV261_01 4615:::MDG_1254.pMV261.3524_02 4615:::MDG.MD.glycerol 4615:::MTB1254_Bottom_14D_01 4615:::MTB1254_FA5_10min_03 4615:::MTB1254.0485.1._ETYA_10m_01 4615:::MTB1254.0485.1._LA_10m_01 4615:::MTB1254.0485.1._OA_10m_01 4615:::MTB1254.0485.1._OA_10m_04 4615:::MTB1254.0485.1._OA_30m_02 4615:::MTB1254.0485.1._PA_10m_01 4615:::MTB1254.0485.1._PA_30m_01 4615:::MTB1254.3219.2._01 4615:::MTB1254.3524.1._OA_10min_04 4615:::MTB1254.B4.1._OA_30MIN_04 4615:::MTB1254.B4.1._PA_10MIN_02 4615:::MTB1254.B4.1.Compl._PA_30MIN_01 4615:::MTB1254.Rv3524.2._PA50.OA30_30m_02 4615:::MTB1254.Rv3524.2.compl._PA50.OA30_2h_02 4615:::OA_50uM_10min_03 4615:::OA_50uM_10min_04 4615:::OA_50uM_10min.Glu_40mM_20min_01 4615:::OA_50uM_24h_03 4615:::OA_50uM_4h_04 4615:::OA_50uM_4h_06 4615:::OA_50uM_4h_07 4615:::OA50um_10min.10mM_G_20min 4615:::PA_100uM_2h_04 4615:::PA_25uM_2h_T0_01 4615:::PA_50uM_10min_07 4615:::PA_50uM_10min_08 4615:::PA_50uM_10min_09 4615:::PA_50uM_1h_07 4615:::PA_50uM_1h_11 4615:::PA_50uM_2h_08 4615:::PA_50uM_2h_T0_02 4615:::PA_50uM_30.min_07 4615:::PA_50uM_30min_08 4615:::PA_50uM_30min_11 4615:::PA_50uM_4h_05 4615:::PA_50uM.0.5.BSA_4h_01 4615:::PA_50uM.AA_30uM_2h_01 4615:::PA_50uM.AA_30uM_30min_01 4615:::PA_50uM.AA_30uM_30min_03 4615:::PA_50uM.OA_10uM_2h_04 4615:::PA_50uM.OA_30uM_24h_01 4615:::PA_50uM.OA_30uM_30min_01 4615:::PA_50uM.OA_30uM_30min_04 4615:::PA_50uM.OA_30uM_4h_04 4615:::Rv_OA30_30mim_03 4615:::Rv.3524.1._01 4615:::Rv.MT90_100603_01 4615:::Rv.MT96_100503_02 4615:::Rv.p0485.1._300uM.PA_10m 4615:::Starvation_1254_24h_07 4615:::Starvation_1254_OA50_3d_01 4615:::Starvation_1254_PA50_24h_04 4615:::Starvation_1254_PA50_6h_01 4615:::Starvation_1254_PA50_6h_04 4615:::Starvation_OA50_24h_02 4615:::TBD043 4615:::TBD044 4615:::TBD045 4615:::TBD092 4615:::TBD098 4615:::TBD1116 4615:::TBD1275 4615:::TBD1277 4615:::TBD818 4615:::TBE059 4615:::TBE734 4615:::TBE735 4615:::Test.1 4615:::Test.2 4615:::Test.6 4615:::Tet_20uM_30M_01 4615:::Tet_5ug_30M_01 4615:::WT_85.1_PA_10min_01 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2 4638:::CDC1551.wild.type.vs.kstR.null.in.1mg.ml.cholesterol.for.24.hrs.rep.3 4638:::CDC1551.wild.type.vs.kstR.null.rep.1 4638:::CDC1551.wild.type.vs.kstR.null.rep.2 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak.4hr.rep.2 4696:::H37Rv.wt.vs.dosS.null.nitric.oxide.treatment.1hr.rep.2 4696:::H37Rv.wt.vs.dosT.null.nitric.oxide.treatment.1hr.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.2 4703:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1 4729:::H37Rv.wild.type.vs.PepD.null.mutant.rep.1 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.4 4735:::H37Rv.dosR.KO.vs.BCG.with.pMFdosR.at.OD.0.4.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.1 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.2 4815:::H37Rv.reaeration.for.12hrs.rep.2 4815:::H37Rv.reaeration.for.12hrs.rep.4 4815:::H37Rv.reaeration.for.1hrs.rep.6 4815:::H37Rv.reaeration.for.24hrs.rep.1 4815:::H37Rv.reaeration.for.24hrs.rep.3 4815:::H37Rv.reaeration.for.6hrs.rep.1 4928:::Mtb.Erdman.strain.20.ppm.CO.rep.1 Milano_Tuberculosis2009:::H37Rv.wild.type.vs.H37Rv.Bif1.mutant.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2 Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.4hrs RV0118C 0.746757626563373 -1.05991405060608 -0.433601202520668 1.20444778477963 -1.70975564611509 0.705862422708064 -0.298030800698961 -1.52152566672627 -0.609813563362401 0.166312790007928 -1.09027273449641 -0.498938370023783 0.240229585567007 0.923959944488486 0.72068875670102 0.66525116003171 -0.572855165582862 1.53377350785089 -0.147833591118158 0.314146381126085 -0.240229585567007 -0.388063176685164 -0.351104778905625 0.258708784456776 -0.942439143378256 NA NA -0.327025822776531 -0.735808101247195 -0.858442784788394 0.613173417705996 0.327025822776531 0.735808101247195 0.858442784788394 -0.613173417705996 -1.1 -0.05 -0.45 -0.388343164547131 -0.388343164547131 -1.59425088603559 -1.49205531641792 0.674490759476595 0.919760126558994 0.44966050631773 NA 0.163512911388266 -0.633612531629529 -1.26722506325906 -0.858442784788394 0.858442784788394 0.575300941906508 0.620531498718468 0.674490759476595 0.21583704303251 0.912546321644805 0.277731489196245 1.30930559192516 3.72953714063529 3.09472230818673 0.23805556216821 -2.0433102419438 -0.575300941906508 0.753842613532665 0.7935185405607 -0.39675927028035 NA -0.63481483244856 NA -0.912546321644805 NA -0.833194467588735 -0.753842613532665 NA 0.15870370811214 2.10282413248586 1.98379635140175 NA 0 -0.416597233794368 0.297569452710263 -0.0595138905420525 0.0991898175700875 NA NA NA NA 1.74867974679117 0.674490759476595 -0.199849113918991 -1.625 0.275 NA NA NA NA 0.795553203485215 1.39321042121395 1.32686706782281 0.840349142954446 0.354995136566629 1.33123176212486 1.8637244669748 -0.177497568283314 -0.816488814103247 -0.283996109253303 -0.354995136566629 -0.496993191193281 -0.319495622909966 -1.2424829779832 -1.34898151895319 -1.38448103260985 -0.798739057274915 -0.141998054626652 0.177497568283315 1.26023273481153 0 -0.887487841416573 0.72774002996159 0.656741002648264 1.40223078943818 0.993986382386561 0.72774002996159 2.18322008988477 -2.41396692865308 -0.97623662555823 -1.63297762820649 -2.50271571279473 -1.01173613921489 -1.15373419384154 -0.514742948021612 -2.12997081939977 1.2424829779832 1.2957322484682 0.425994163879955 1.54422884406484 1.31348200529653 2.18322008988477 1.63297762820649 0.85198832775991 0.461493677536618 -0.0709990273133259 -0.496993191193281 0.0887487841416573 -0.72774002996159 -0.514742948021612 -1.5264790872365 -0.603491732163269 -1.18923370749821 -0.0532492704849944 -0.301745866081635 -0.745489786789921 0.532492704849944 0.0354995136566629 -1.47322981675151 -1.59747811454983 -1.68622689869149 -0.674490759476595 2.18322008988477 1.10048492335655 -0.816488814103247 -0.958486868729898 0.0887487841416573 1.33123176212486 -0.479243434364949 -1.26023273481153 0.337245379738298 -0.461493677536618 -0.496993191193281 -2.04122203525812 -3.30145477006965 4.50843823439619 0.550242461678275 -1.38448103260985 NA -0.905237598244904 0.869738084588241 -0.479243434364949 -0.869738084588241 -0.319495622909966 -1.2424829779832 -1.06498540969989 1.20698346432654 -0.816488814103247 -0.621241488991601 1.45548005992318 -1.36673127578152 0.212997081939977 0.425994163879955 1.72172641234815 0.97623662555823 0.266246352424972 0.443743920708286 0.745489786789921 -1.22473322115487 0.496993191193281 0.656741002648264 0.479243434364949 -0.177497568283314 0.479243434364949 0.159747811454983 -1.38448103260985 0.195247325111646 1.10048492335655 0.834238570931578 0.85198832775991 1.13598443701321 -1.11823468018488 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