Bicluster 37 (zzz

[+] Show/hide bicluster #37 rows and columns.

bicluster 37 Mycobacterium tuberculosis H37Rv 15x25

RV0521C
RV1758
RV1763
RV2105
RV2278
RV2354
RV2480C
RV2648
RV3184
RV3186
RV3325
RV3381C
RV3473C
RV3474
RV3565

2867:::H37Ra..7H9.roll.replicate.4
2867:::H37Ra..Youman.media.replicate.4
2885:::Strain.9802826..replicate.1
2885:::Strain.9802826..replicate.3
2885:::Strain.9802826..replicate.4
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.2
4107:::PBS.Tw.DMSOvs7H9..6h
4107:::X1mM.DNP.DMSO..6h..2
4107:::X40ug.mLProcept6778vsDMSO.6h
4107:::X7d.Dubos.NRP.1vsDubos.log.phase
4364:::H37dosR.mutant.hypoxia.7.day.rep.1
4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.2
4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.3
4583:::X20ug.ml.KCN.vs.DMSO.6hrs
4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
4615:::Acetate.3mM.10m.07
4615:::PA_10uM_10min_02
4615:::Starvation_1254_OA50_5d_02
4731:::X2ug.ml.PA.824.vs.DMSO.6hrs.rep.1
4799:::H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
4802:::H37Rv.ctrl.vs.relE1.overexpression.6.hr.rep.4
4815:::H37Rv.reaeration.for.12hrs.rep.1
4815:::H37Rv.reaeration.for.12hrs.rep.5
4815:::H37Rv.reaeration.for.24hrs.rep.2

[+] Show/hide bicluster #37 rows (genes).

bicluster 37 genes Mycobacterium tuberculosis H37Rv 15

RV0521C
RV1758
RV1763
RV2105
RV2278
RV2354
RV2480C
RV2648
RV3184
RV3186
RV3325
RV3381C
RV3473C
RV3474
RV3565

[+] Show/hide bicluster #37 rows (short gene names).

bicluster 37 short names Mycobacterium tuberculosis H37Rv 15 short_name

RV0521C
RV1758	cut1
RV1763	Rv1763
RV2105	Rv2105
RV2278	Rv2278
RV2354	Rv2354
RV2480C	Rv2480c
RV2648	Rv2648
RV3184	Rv3184
RV3186	Rv3186
RV3325	Rv3325
RV3381C	Rv3381c
RV3473C	bpoA
RV3474	Rv3474
RV3565	aspB

[+] Show/hide bicluster #37 rows (long gene names).

bicluster 37 long names Mycobacterium tuberculosis H37Rv 15 long_name

RV0521C
RV1758	PROBABLE CUTINASE CUT1
RV1763	PUTATIVE TRANSPOSASE
RV2105	PROBABLE TRANSPOSASE
RV2278	PROBABLE TRANSPOSASE
RV2354	PROBABLE TRANSPOSASE
RV2480C	POSSIBLE TRANSPOSASE
RV2648	PROBABLE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS6110
RV3184	PROBABLE TRANSPOSASE
RV3186	PROBABLE TRANSPOSASE
RV3325	PROBABLE TRANSPOSASE
RV3381C	PROBABLE TRANSPOSASE
RV3473C	POSSIBLE PEROXIDASE BPOA (NON-HAEM PEROXIDASE)
RV3474	POSSIBLE TRANSPOSASE FOR INSERTION ELEMENT IS6110
RV3565	aspartate aminotransferase

[+] Show/hide bicluster #37 rows (NCBI RefSeq gene IDs).

bicluster 37 NCBI RefSeq IDs Mycobacterium tuberculosis H37Rv 28

NP_216274
NP_216274.1
NP_216279
NP_216279.1
NP_216621
NP_216621.1
NP_216794
NP_216794.1
NP_216870
NP_216870.1
NP_216996
NP_216996.1
NP_217164
NP_217164.1
NP_217700
NP_217700.1
NP_217702
NP_217702.1
NP_217842
NP_217842.1
NP_217898
NP_217898.1
NP_217990
NP_217990.1
NP_217991
NP_217991.1
NP_218082
NP_218082.1

[+] Show/hide bicluster #37 gene upstream sequences.

bicluster 37 upstream sequences Mycobacterium tuberculosis H37Rv 14 upstream

RV1758	GCGACCTCACTGATCGCTGCCCACTCCGAATCGTGCTGACCGCGGATCTCTGCGACCATCCGCACCGCCCGCTCACGCAGCTCCGGCGGGTACCTCCTCGATGAACCACCTGACATGACCCCATCCTTTCCAAGAACTGGAGTCTCCGGACATGCCGGGGCGGTTCAGAG
RV1763	CGGCCGCGCATGAGTGAGGTGGCAGCGCGTAACGCGCCGCGTAGTGCGTAGACGGCAGTCACCGCCGCCAACAGGATCAACAGGACAAAGGTCGGCAACCTGAACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGA
RV2105	TTCGGCACGGACACGGCTCGTTCGACGGACGTCGTGACCAGAAGTCGAGCAAACCGACTCCACTCTAGCTAGTGATACAAGCTTTTTTGTAGCCGCGCGATGAACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGA
RV2278	CCCGCGCGATGCGCGACAATCATCGGGTCGTCAGTCTGGCCCAGCGGCAAAGCATCCGCCACACCGCAAGTCCCTCCCAAGGCGATCACCAGCGCCACCGTGAACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGA
RV2354	CCGATGTTGCCGCTGCCCACGTTGGTGCTGCCGATGTTGCCGCTGCCCACGTTGGTGCTGCCGATGTTGCCGCTACCCAGGTTTTGGCTACCGAAGTTTCTGAACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGA
RV2480C	CTCGGCATATGCGTGGGCAGTTCGCGGAATCACCCGGTGCCAACGCAACTGTGCCAACGCAACTAGGAAAGGAATGAGCAAATGTTCGAAACGCCACTGTGAACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGAG
RV2648	AAACGGTTGGAGCGGCTGACCGCCGGTGCCCGGGATGGGCCCCGGCGGCAACTTGTCCAACGGGCGACGCTCACGTCCACGCTTGCGCAGCTCATCTTCGTGAACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGA
RV3184	CTTAGCTATGCGCATGTTCCCAAAAGTGTTCCCGCCCATGAAAACGGCCCCCGGAGTCTCCTCCGAGGGCCATTTCGCCGGTAGCGGGGACAGGATTCGATGAACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGA
RV3186	AACCAGTCGCAATCTCTCCCATCGCGGTCGGTCTCATACGTCCAGATCAGCCTCTATTCCGCCGTCCAGCCTGTTCCGCCGCGTCGCGGTTGTACGGATTTGAACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGA
RV3325	ACTGCGCTGAAAGCCTCGGCGAGGTCGAAGTCGACGCGAGTCAAACAGTGCATCTGGCGCGTCCAACAAGTCAACCGCACCGACCGCTTGTTATGGACACTGAACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGA
RV3381C	GGAACGCTCGATAGCGACCGAGACGGTGCGATTCGGCCTTCCCAAACAGGTTCGCGCGCAATGACAACCACGATTCGCAACGGACGCGGGGACTTGATTTGAACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGAG
RV3473C	CACCGCCCGCTCACGCAGCTCCGGCGGGTACCTCCTCGATGAACCACCTGACATGACCCCATCCTTTCCAAGAACTGGAGTCTCCGGACATGCCGGGGCGGTTCAGTCCGTATCGTCGCCGACCGCTTGGGAGACCCGCGAGCGCGTGCCGTGGTGTTCTTGCATGGCGG
RV3474	CTGCGGCCCGACCCCATGAGCGTCGCGTCTGTCCACCGCCATGCAAGAACACCACGGCACGCGCTCGCGGGTCTCCCAAGCGGTCGGCGACGATACGGACTGAACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGA
RV3565	TCGCGCCCCGGCCCGCCGAGGCCCTTAAGTGCCGCGAATTCGCCGGCCAGATTGTCGGCGAGCCAACCGCGGACCTGCGCCCGGAACTCCTCGACGTCCTGCATGCCCTGTAGGCTAACCTACCAAGCACTTGCTTTGTTAGGAGCGTCCGTTGATAAACGATCTGCGCA

[+] Show/hide bicluster #37 columns (arrays; conditions).

bicluster 37 arrays Mycobacterium tuberculosis H37Rv 25

2867:::H37Ra..7H9.roll.replicate.4
2867:::H37Ra..Youman.media.replicate.4
2885:::Strain.9802826..replicate.1
2885:::Strain.9802826..replicate.3
2885:::Strain.9802826..replicate.4
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.2
4107:::PBS.Tw.DMSOvs7H9..6h
4107:::X1mM.DNP.DMSO..6h..2
4107:::X40ug.mLProcept6778vsDMSO.6h
4107:::X7d.Dubos.NRP.1vsDubos.log.phase
4364:::H37dosR.mutant.hypoxia.7.day.rep.1
4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.2
4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.3
4583:::X20ug.ml.KCN.vs.DMSO.6hrs
4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4
4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2
4615:::Acetate.3mM.10m.07
4615:::PA_10uM_10min_02
4615:::Starvation_1254_OA50_5d_02
4731:::X2ug.ml.PA.824.vs.DMSO.6hrs.rep.1
4799:::H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1
4802:::H37Rv.ctrl.vs.relE1.overexpression.6.hr.rep.4
4815:::H37Rv.reaeration.for.12hrs.rep.1
4815:::H37Rv.reaeration.for.12hrs.rep.5
4815:::H37Rv.reaeration.for.24hrs.rep.2

[+] Show/hide bicluster #37 ratios.

bicluster 37 ratios Mycobacterium tuberculosis H37Rv 15x25

GENES 2867:::H37Ra..7H9.roll.replicate.4 2867:::H37Ra..Youman.media.replicate.4 2885:::Strain.9802826..replicate.1 2885:::Strain.9802826..replicate.3 2885:::Strain.9802826..replicate.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.2 4107:::PBS.Tw.DMSOvs7H9..6h 4107:::X1mM.DNP.DMSO..6h..2 4107:::X40ug.mLProcept6778vsDMSO.6h 4107:::X7d.Dubos.NRP.1vsDubos.log.phase 4364:::H37dosR.mutant.hypoxia.7.day.rep.1 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.2 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.3 4583:::X20ug.ml.KCN.vs.DMSO.6hrs 4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.4 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2 4615:::Acetate.3mM.10m.07 4615:::PA_10uM_10min_02 4615:::Starvation_1254_OA50_5d_02 4731:::X2ug.ml.PA.824.vs.DMSO.6hrs.rep.1 4799:::H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1 4802:::H37Rv.ctrl.vs.relE1.overexpression.6.hr.rep.4 4815:::H37Rv.reaeration.for.12hrs.rep.1 4815:::H37Rv.reaeration.for.12hrs.rep.5 4815:::H37Rv.reaeration.for.24hrs.rep.2 RV0521C NA NA NA NA NA 0.632983635816497 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.351908222335615 NA NA NA NA NA RV1758 NA NA 0.95985223463977 -0.0518839045751228 0.648548807189034 0.590179414542021 -1.28766417718259 NA 0.674490759476595 -1.62490955692089 0.936792721495271 NA 0.75 1.55975988128963 NA NA NA NA NA 0.0421556724672872 0.804655642884359 NA NA NA NA RV1763 2.35665446082184 NA 0.71266948171112 1.00537301884247 0.929015574373424 2.69796303790638 -0.674490759476595 0.835083797447213 1.67016759489443 -2.08770949361803 NA 1.27115566209051 0.778258568626841 1.2 NA NA -0.398562721508897 2.33005898728278 -4.96670468341856 -0.0691785394334969 0.141172484541613 1.26895719155766 NA NA NA RV2105 1.70337496884767 -0.400121636977641 0.609911856973517 NA 0.667315325865142 1.98974774045596 -2.95627864791869 1.03326244004925 1.54989366007388 -1.92301620786944 NA 1.21881663554543 0.792822471665472 2.45 NA NA NA 2.3125397467769 -3.62940265813596 0.47611112433642 -0.112415126579433 1.66028494640393 NA NA NA RV2278 1.48784726355131 -0.416597233794368 0.576580810520315 0.892068423823884 0.739764058780782 1.71357111867027 -1.62541215808294 0.519689601563934 NA -1.47061100017028 NA 1.34898151895319 1.32087773730833 0.50998081814084 NA NA -1.34898151895319 2.19209496829893 -2.61365169297181 1.25027555415174 -0.424679367077856 0.955528575925177 NA NA NA RV2354 0.945932162680591 0.0740294736010896 0.866371751396661 0.598901277811114 0.982663261651246 2.78789513916993 -1.66847714186316 0.496993191193281 1.56197860089317 -2.76896206521971 NA 1.00424179744293 1.21408336705787 0.95 NA NA 0.610253544288348 2.08770949361803 -1.73440481008267 0.23125397467769 0.727185350060704 1.40712727408048 NA NA NA RV2480C 1.93232487850052 -0.0911473999292694 0.15759129894313 1.01488796519376 -0.00630365195772505 2.23425064076622 -1.45274932810344 0.337245379738298 1.34898151895319 -1.68622689869149 NA 1.15225504743918 1.32087773730833 0.225 NA NA 0.183952025311799 2.23808297462688 -3.21916044295648 0.24356610758877 NA 1.28685737005403 NA NA NA RV2648 1.52563386072087 -0.658431455679534 NA NA NA 1.97850622779801 -1.55426131531563 0.645165074281961 1.67156405609417 -1.58358700051027 NA 0.986754999975019 0.512113354417415 1.44533734173556 NA NA -0.0642372151882471 2.40889556955927 -3.01914911384762 0.252934034803723 NA 1.78793582273955 NA NA NA RV3184 1.28412663823429 -0.765287592483061 0.0574034688916252 0.674490759476595 0.172210406674875 1.98600056956997 -1.23167877817465 0.64516507428196 2.02347227842979 -1.99414659323515 NA 1.21408336705787 1.42992041009038 0.143073797464732 NA NA 0.0281037816448581 1.34898151895319 -1.99536849678493 0.713033088589544 0.643119096245126 1.23064980676431 NA NA NA RV3186 1.43329286388776 -0.674490759476595 0.186287924045917 0.366152126573009 0.700185645551894 1.02948589604322 -2.15263008343594 1.32027978450738 1.34898151895319 -1.72210406674875 0.604715853323844 1.00456070560344 1.377683253399 1.34898151895319 NA NA -1.02639898181221 1.99414659323515 -2.4633575563493 0.218217598654193 NA 1.83461486577634 NA NA NA RV3325 1.54169316451793 -0.513897721505977 0.430526016687188 0.688841626699501 0.774946830036939 3.24598677998111 -2.12724008758003 1.08956199607758 1.84187861241686 -1.27115566209051 NA 1.43695857453709 1.29033014856392 1.53634006325224 NA NA 0.441013188888543 2.04941423071735 -1.19332980522782 0.46250794935538 0.346360119731225 0.941961233062141 NA NA NA RV3381C 1.34095186705466 -0.297097120245643 0.0249811392398734 1.07418898731458 0.158213881852534 2.02347227842979 -2.3125397467769 0.698579715172188 1.71031585438708 -1.37307047464878 NA 1.46628425973173 1.40763288934246 0.904804677346652 2.536085255632 1.21408336705787 NA 2.05045190880885 -2.42816673411574 0.399698227837982 0.220241880645419 1.14250475584811 NA NA NA RV3473C NA NA 1.88857412653447 NA NA NA NA 0.646386977831737 0.365349161383156 -1.96726471514007 1.51416292943725 NA NA 1.03767809150245 NA NA -1.02639898181221 NA -3.2258253714098 0 0.550242461678275 NA 1.1293798763329 -1.03526488663849 0.65880492786086 RV3474 NA NA 1.22634683541199 1.15821645566688 1.64875518983168 0.885269121813031 -2.63931166751711 1.23167877817465 1.31965583375856 -2.43403187115467 NA 1.14370172259075 1.05572466700684 1.83076063286504 NA NA -0.738727974664842 1.73440481008267 -3.01914911384762 0.674490759476595 -0.196726471514007 1.67089756324884 NA NA NA RV3565 NA NA NA NA NA 1.37307047464878 NA 0.224830253158865 0.44966050631773 -0.738727974664842 NA NA NA 1.17081414852541 NA NA NA NA NA 0.127262407448414 NA NA NA NA NA

[+] Show/hide bicluster #37 motif PSSM #1.

bicluster 37 motif PSSM #1 Mycobacterium tuberculosis H37Rv 24x4

POSITION A C G T 1 1 0 0 0 2 0 0 1 0 3 1 0 0 0 4 0 1 0 0 5 0 0 0 1 6 0 1 0 0 7 0 1 0 0 8 1 0 0 0 9 0 0 1 0 10 0 0 0 1 11 0 0 0 1 12 0 1 0 0 13 0 0 0 1 14 0 0 0 1 15 0 0 1 0 16 0 0 1 0 17 1 0 0 0 18 1 0 0 0 19 1 0 0 0 20 0 0 1 0 21 0 0 1 0 22 1 0 0 0 23 0 0 0 1 24 0 0 1 0

[+] Show/hide bicluster #37 motif PSSM #2.

bicluster 37 motif PSSM #2 Mycobacterium tuberculosis H37Rv 21x4

POSITION A C G T 1 0 1 0 0 2 0 0 1 0 3 0 0 1 0 4 1 0 0 0 5 0.014167 0.947371 0.024295 0.014167 6 0.937244 0.024295 0.024295 0.014167 7 0.014167 0.024295 0.024295 0.937244 8 0.014167 0.024295 0.947371 0.014167 9 0 1 0 0 10 0 1 0 0 11 0 0 1 0 12 0 0 1 0 13 0 0 1 0 14 0 0 1 0 15 0 1 0 0 16 0 0 1 0 17 0 0 1 0 18 0 0 0 1 19 0 0 0 1 20 0 1 0 0 21 1 0 0 0