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[+] Show/hide bicluster #60 rows and columns.
bicluster 60
Mycobacterium tuberculosis H37Rv
4x135
[+] Show/hide bicluster #60 rows (genes).
bicluster 60 genes
Mycobacterium tuberculosis H37Rv
4
[+] Show/hide bicluster #60 rows (short gene names).
bicluster 60 short names
Mycobacterium tuberculosis H37Rv
4
short_name
[+] Show/hide bicluster #60 rows (long gene names).
bicluster 60 long names
Mycobacterium tuberculosis H37Rv
4
long_name
[+] Show/hide bicluster #60 rows (NCBI RefSeq gene IDs).
bicluster 60 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
6
[+] Show/hide bicluster #60 gene upstream sequences.
bicluster 60 upstream sequences
Mycobacterium tuberculosis H37Rv
3
upstream
[+] Show/hide bicluster #60 columns (arrays; conditions).
bicluster 60 arrays
Mycobacterium tuberculosis H37Rv
135
[+] Show/hide bicluster #60 ratios.
bicluster 60 ratios
Mycobacterium tuberculosis H37Rv
4x135
GENES 2867:::H37Ra..Dubos.media.replicate.4 2867:::H37Ra..Youman.media.replicate.1 2867:::H37Rv..Youman.media.replicate.1 2885:::H37Ra..7H9.roll.replicate.3 2885:::H37Rv..7H9.roll.replicate.3 2885:::Strain.1006...replicate.2 2885:::Strain.1006...replicate.4 2885:::Strain.1254...replicate.3 2885:::Strain.1843...replicate.2 2885:::Strain.3160..replicate.4 2885:::Strain.9800608..replicate.1 2885:::Strain.CDC1551..replicate.3 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.20min...0.05.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.1 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.6 4084:::High.iron.wt.vs.high.iron.ideR.KO.3b 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.2 4089:::MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.4 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.1 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.6 4099:::H37Rv.hypoxia.2hr.rep.2 4100:::H37Rv.0.2..Oxygen..2h..3 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.5 4101:::H37Rv.Day6.3 4101:::NRP.Day14..6 4101:::NRP.Day14..7 4101:::NRP.Day14..8 4101:::NRP.Day20..1 4101:::NRP.Day20..2 4107:::Rif.5ug.mL.vsDMSO.2.5hA 4107:::Succinate.7H9.based.medium..1 4107:::WT.t.0h.WT.t.6h..1 4107:::WT.t.0h.WT.t.6h..2 4107:::WT.t.6h.WT.t.0h..1 4107:::X0.12mg.mL.BZA.pH5.6..2h. 4107:::X0.12mg.mL.Nam.pH5.6..4h..2 4107:::X0.12mg.mL.PZA.pH5.6..2h. 4107:::X0.12mg.mL.PZA.pH5.6..4h..1 4107:::X0.12mg.mL.PZAvspH5.6..4h. 4107:::X0.12mg.mL.PZAvspH5.6..4h.A 4107:::X0.1mM.GSNO.DMSO..3.5h 4107:::X0.1mMGSNO.10ug.mLmdvsDMSO.6h 4107:::X0.1mMGSNO.20ug.mLCPZvsDMSO.6hA 4107:::X0.1mMGSNO.5ug.mLKCNvsDMSO.6h 4107:::X0.2ug.mL.Mtm.ctrl..4h...1 4107:::X0.2ug.mL.PA824.DMSO..6h..1 4107:::X0.4ug.mL.PA824.DMSO..6h..2 4107:::X0.4ug.mL.PA824.DMSO..6h..3 4107:::X0.4ug.mL.PA824.DMSO..6h..4 4107:::X0.5ug.mL..124196vsDMSO..6hA 4107:::X1.2mg.mL.PZAvspH5.6..4h.A 4107:::X10ug.mL.menadionevsDMSO..6h 4107:::X10ug.mLmdn.0.1mMGSNO.DMSO..2 4107:::X10ug.mLmnd.Dubos.vsDMSO.6h 4107:::X130ug.mL.TLMvsDMSO..6h 4107:::X130ug.mL.TLMvsDMSO..6hA 4107:::X1ug.mL..111895vsDMSO..6h 4107:::X20ug.mL.CPZvsDMSO..6h.A 4107:::X2ug.mL.PA824.DMSO..6h..2 4107:::X4mM.H2O2.ctrl..4h...2 4107:::X5ug.mL.AmivsEtOH..6h 4107:::X5ug.mLStreptomycinvsEtOH.6h 4364:::H37dosR.mutant.hypoxia.1.day.rep.1 4364:::H37dosR.mutant.hypoxia.1.day.rep.2 4364:::H37dosR.mutant.hypoxia.1.day.rep.3 4365:::H37Rv.diamide.1h.rep.2 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.4 4396:::H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3 4396:::Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.0.4 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.4 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.2 4575:::Whole.Lung.Surfactant.2hrs.rep.2 4583:::X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.2 4583:::X130ug.ml.TLM.vs.DMSO.6hrs.rep.1 4583:::X130ug.ml.TLM.vs.DMSO.6hrs.rep.2 4583:::X2ug.ml.PA.824.vs.DMSO.6hrs.rep.2 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media.rep.1 4615:::AA_10uM_10min_01 4615:::CHP.AA.1h.1 4615:::CK.2.2h.for.OA.NA.and.PA.NA 4615:::ETYA_30uM_10min.05 4615:::ETYA_30uM_10min.06 4615:::MTB1254.3524.1._OA_10min_04 4615:::PA_50uM_30.min_04 4615:::PA_50uM_4h_07 4615:::Starvation_1254_OA50_3d_01 4615:::TBD099 4615:::TBE285 4615:::Test.G.OA 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.3 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.2 4696:::H37Rv.wt.vs.dosS.dosT.null.dosT.complemented.rapid.anaerobic.dormancy.day.6.rep.2 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.4hr.rep.2 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.1 4729:::H37Rv.wild.type.vs.PepD.null.mutant..DS..rep.1 4729:::H37Rv.wild.type.vs.PepD.null.mutant..DS..rep.2 4729:::H37Rv.wild.type.vs.PepD.null.mutant.rep.2 4731:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.2 4731:::X2ug.ml.PA.824.vs.DMSO.6hrs.rep.1 4731:::X5ug.ml.Streptomycin.vs.Ethanol.6hrs 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.1 4799:::H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.2 4799:::H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2 4802:::H37Rv.ctrl.vs.relE3.overexpression.24.hr.rep.2 4802:::H37Rv.ctrl.vs.relE3.overexpression.6.hr.rep.2 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.1 4815:::H37Rv.reaeration.for.24hrs.rep.1 4860:::M..bovis.nadABC.null.nicotinamide.starvation.rep.2 4928:::Mtb.Erdman.strain.200.ppm.CO.rep.1 4928:::Mtb.Erdman.strain.200.ppm.CO.rep.2 4928:::Mtb.Erdman.strain.2000.ppm.CO.rep.1 4928:::Mtb.Erdman.strain.2000.ppm.CO.rep.2 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.3 Milano_Tuberculosis2009:::H37Rv.wild.type.vs.H37Rv.Bif1.mutant.rep.3 Raghavan_Nature2008:::ESPR..mutant..R...rep3 Rohde_CellHostMicrobe2007:::CDC1551.ctrl..vs.24.hr.after.macrophage.infection
RV0238 0.139549812305503 0.976848686138517 0.627974155374761 -0.974264430355082 -0.738727974664842 -1.35968772148456 -0.139180632907869 -0.374717088598108 -0.717315569602093 0.438954303786356 0.503191518974602 NA 1.18035882908404 -0.505868069607446 -1.05389181168218 -1.51760420882234 -0.885269121813031 0.885269121813031 2.48718467556995 1.77053824362606 1.77053824362606 -0.379401052205585 -0.0843113449345744 -0.800957776878457 1.05 0.153293354426499 1.10371215187079 -0.398562721508897 0.919760126558994 0.183952025311799 0.643832088591295 0.5 -0.15 0.6 0.175 0.26497851265152 0.578134936694224 -0.9876471835193 -0.843113449345744 -0.62631284808541 -0.650401803781003 -0.674490759476595 -1.30299351262524 -2.74395104423433 -2.55999901892253 -2.00814294298714 -1.79353224679004 -0.567185411378046 -0.475209398722147 -0.689820094919245 NA -0.352574715180947 -1.08838281642814 0.720478765804545 1.21101749996934 2.59065768980783 0.689820094919245 0.168622689869149 0.352574715180947 0.965748132886943 2.13077762652834 2.13077762652834 0.0459880063279497 -0.873772120231044 1.02706547465754 3.60239382902272 1.36431085439584 0.0459880063279497 -0.137964018983849 0.659161424033945 1.02706547465754 1.11904148731344 -0.628502753148646 NA 1.30299351262524 -1.78886679687271 -0.32258253714098 0.146628425973173 0.245269367082398 1.31832284806789 NA NA NA NA 1.1 -0.15 -1.05572466700684 -2.13099979081011 0.230313917870057 -0.263215906137208 -0.460627835740114 0.888353683213077 1.34898151895319 -0.481779113911854 NA -0.770846582258966 0.256948860752989 -1.50957455692381 -1.2205070885767 -1.12415126579433 NA -1.12415126579433 -0.835083797447213 -1.34898151895319 NA -0.0720329937305102 1.22456089341867 -0.857847470790621 -0.503010057914749 -0.91456374166318 -0.937427835204759 0.328130639745371 -1.07918521516255 -0.674490759476595 0.0269796303790635 0.463083207998856 0.0604021575650682 0.68455778573744 0.0991898175700876 0.505868069607446 0.252934034803723 1.41643059490085 0.774005789563306 1.12783700764939 1.45955377460509 0.598947794415217 NA -0.708215297450425 1.65250236071766 -0.539592607581276 1.2478079050317 -0.749284132182393 -0.674490759476595 0.486862634538262 0.4485
RV0391 0.584558658213049 0.764422860740141 0.359728405054183 0.351908222335615 -0.0586513703892692 -0.351908222335615 -0.909096241033672 -0.938421926228307 -1.55426131531563 NA 0.762467815060499 0.791793500255133 0.351908222335615 -0.967747611422941 -0.997073296617575 -0.205279796362442 -0.527862333503422 0.0879770555839037 0.469210963114153 1.70088974128881 2.22875207479223 -1.08505035220148 -0.351908222335615 0.557188018698057 0.89932101263546 -0.283996109253303 0.319495622909966 -1.10048492335655 0.922987355073235 0.283996109253303 0.354995136566629 0.15 -0.3 0 0.0613173417705996 0.343161965347741 0.686323930695483 -1.66847714186316 -1.60931128576872 -1.10048492335655 -1.98797276477312 -1.21881663554543 -2.08478962020039 -2.05413094931509 -2.45269367082398 -2.02347227842979 -2.82059772144758 -0.950418797444293 -0.0919760126558993 -1.56359221515029 -2.33005898728278 -0.643832088591295 -0.797125443017794 0.674490759476595 2.02347227842978 1.37964018983849 0.122634683541199 0.919760126558993 0.889101455673693 0.153293354426499 1.25700550629729 1.13437082275609 0.367904050623597 -0.122634683541199 1.65556822780619 0.674490759476595 NA -0.245269367082398 -0.490538734164796 0.245269367082398 2.39137632905338 0.0919760126558993 -0.306586708852998 0.490538734164796 2.60598702525048 -0.775962820636791 -0.990844832505441 -1.26541629211538 0.2 1.1 NA NA NA NA 0.5 -0.75 -1.15156958935028 -2.30746838768309 0.691785394334969 -0.760963933768466 -1.03767809150245 -0.380481966884233 0.843113449345744 -0.0562075632897163 1.32087773730833 -0.646386977831737 0.0843113449345744 -0.786905886056028 -0.843113449345744 -0.309141598093439 0.0562075632897162 -0.0281037816448582 -0.477764287962588 -0.89932101263546 1.29277395566347 -1.02261502243226 1.71886354834358 -0.19581989791256 -1.21556576433145 -0.296479454714987 -1.97158837385466 0.0156858316157348 -0.45 -0.35 0 -0.172946348583742 -0.726374664051718 1.2106244400862 -0.499298354417739 0.919760126558993 -1.24406073414572 NA 0.243964742789407 0.990209838380533 0.215263008343594 1.17232917718551 1.01579933656114 NA NA NA NA -1.13058647 NA 0.145 0
RV0608 0.418649436916507 0.976848686138517 0.604715853323844 -1.18035882908404 -0.168622689869149 -0.463712397140159 -1.05389181168218 -0.885269121813031 -1.01173613921489 0.252934034803723 0.210778362336436 0 0.155651713725368 -0.57072295032635 -1.32303956666563 -0.674490759476595 -0.129709761437807 -0.0259419522875613 1.1414459006527 1.76405275555417 1.81593666012929 -0.466955141176104 -0.907968330064647 -1.71216885097905 1.76866465818307 1.07918521516255 0.593551868339404 -1.24106299743694 0.836368541750978 0.0269796303790638 0.0539592607581276 0.265708481005931 0.0204391139235331 -0.0749434177196216 -0.0408782278470664 0.835988546956907 0.332495444812406 -0.816988807253341 -0.62699141021768 -0.275496225701708 -1.33948164910141 -1.22548321088001 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -1.70397665551982 -0.816488814103247 -0.993986382386561 0.490538734164796 -0.153293354426499 0.149886835439243 -0.224830253158865 0.337245379738297 0 0.8 -0.55 -0.351908222335615 -3.11764617713626 NA -1.42680737581587 -1.03767809150245 0.804200520914402 0.547228352028181 -0.674490759476595 0.441907738967424 -1.79088925792061 0.465166041018342 -0.674490759476595 -0.534940947171093 -0.674490759476595 NA -1.41875642510594 -0.674490759476595 -0.488424343069259 1.27920661280044 -0.025 1.325 -1.025 -0.637019050616784 -0.880585158205555 -0.524603924037352 0.674490759476595 NA NA NA NA -0.718479287268547 0.850444870644403 -0.465166041018342 -0.0930332082036684 -1.09066590894088 2.03782314565269 NA NA NA 0.438825313394411 NA -0.409512246825076 0.939469272128115 -0.409512246825076 0.409512246825076 0.0328276774580823 NA 1.10048492335655 -0.0122084664137202
RV3724 NA 1.02948589604322 -0.390494650223292 -1.0492078480747 0.224830253158865 -0.299773670878487 0.337245379738297 0.0374717088598109 -0.749434177196217 0.0749434177196217 1.23656639237376 NA 1.03908035919367 0.0911473999292696 0.127606359900977 -1.76825955862783 -0.820326599363427 0.820326599363427 1.47658787885417 -0.0182294799858539 -0.455736999646348 -1.11199827913709 -0.236983239816101 -1.54950579879758 0.299773670878487 0.0518839045751227 0.294008792592362 -1.91970446927954 0.77825856862684 1.47004396296181 0.294008792592362 NA NA NA NA 0.5290123603738 0.47611112433642 -1.71929017121485 -1.16382719282236 -1.21672842885974 -1.40188275499057 -1.08447533876629 -0.836368541750978 -1.18710373667881 -0.647511129097531 -2.42816673411574 NA -0.755429650613787 -0.56657223796034 -2.32024821259949 -1.67273708350196 -0.188857412653447 -0.458653716444085 0.836368541750978 0.728450020234723 1.80763523539728 0.782409280992851 0.323755564548766 0.188857412653447 1.94253338729259 1.13314447592068 1.05220558478349 0.107918521516255 -0.0809388911371914 1.02522595440442 1.45690004046945 1.78065560501821 -0.431674086065021 -0.404694455685957 1.05220558478349 1.8615944961554 0.998246324025361 -0.512612977202212 0.458653716444085 0.944287063267234 NA NA NA 0.175 -0.025 NA NA NA NA 1.05 0.05 -1.96726471514007 -1.05341815244097 0.488424343069259 -0.372132832814673 -0.348874530763756 0.860557175883932 NA -0.643832088591295 2.14610696197099 -1.04239481010019 1.19568816452669 -0.214610696197099 -0.245269367082398 -0.705149430361895 0.0613173417705996 -1.10371215187079 -1.13437082275609 -0.306586708852998 1.19568816452669 -0.585407074262705 0.865384370649217 -0.687217000221437 -0.238665961045564 -0.238665961045564 -1.1414459006527 0.674490759476595 NA NA NA 0.912947088584482 0.204391139235332 0.408782278470664 -0.840519254116988 0.79901213045689 NA 1.31965583375856 1.10006231009873 0.9876471835193 0.827054145548682 NA NA -0.0749999999999999 0.0750000000000001 -0.375 1.125 -1.1992239769871 -0.50793268 0.395 0.1925
[+] Show/hide bicluster #60 motif PSSM #1. bicluster 60 motif PSSM #1 Mycobacterium tuberculosis H37Rv 7x4
POSITION A C G T
1 0 0 0 1
2 0 0 0 1
3 0.333333 0 0 0.666667
4 0 0 1 0
5 0.333333 0.333333 0.333333 0
6 0 0 0 1
7 1 0 0 0 [+] Show/hide bicluster #60 motif PSSM #2. bicluster 60 motif PSSM #2 Mycobacterium tuberculosis H37Rv 6x4
POSITION A C G T
1 0 1 0 0
2 1 0 0 0
3 0 0 0 1
4 0 0.666667 0.333333 0
5 1 0 0 0
6 1 0 0 0 |