Bicluster 65 (zzz

[+] Show/hide bicluster #65 rows and columns.

bicluster 65 Mycobacterium tuberculosis H37Rv 16x59

RV0315
RV0760C
RV0761C
RV1078
RV1241
RV1242
RV1589
RV1590
RV1591
RV2211C
RV2213
RV2911
RV2929
RV3791
RV3794
RV3795

2867:::H37Ra..7H9.shake.replicate.4
4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.2
4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.3
4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.1
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.2
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.3
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.4
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.3
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.4
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.2
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.2
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.3
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.3
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.20min...0.05.mM.DETA.NO.40min.rep.1
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.20min...0.05.mM.DETA.NO.40min.rep.2
4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1
4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.3
4062:::MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.3
4084:::High.iron.wt.vs.high.iron.ideR.Complement.2b
4107:::PBS.Tween.7H9
4107:::pH4.8vspH6.8..5.5h.
4107:::X0.1mg.mLTriclosanvsEtOH.6hC
4107:::X0.1mM.GSNO.DMSO..3.5h
4107:::X0.1mMGSNO.20ug.mLCPZvsDMSO.6hA
4107:::X0.4ug.mL.PA824.DMSO..6h..4
4107:::X200uM.Dipyridylvsctrl..6h
4107:::X200uM.Dipyridylvsctrl..6hA
4107:::X20ug.mL.KCN.DMSO..6h
4107:::X20ug.mLProcept6778vsDMSO.6hA
4107:::X25ug.mLCPZ.0.1mMGSNO.DMSO..2
4107:::X2ug.mL..111895vsDMSO..6hA
4107:::X2ug.mL.PA824.DMSO..6h..1
4107:::X2ug.mL.PA824.DMSO..6h..2
4107:::X50ug.mL.Triclosan.EtOH
4107:::X50ug.mL.TriclosanvsEtOH..6h
4363:::H37Rv.hypoxia.4.day.rep.2
4583:::X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.1
4583:::X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
4583:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.3
4583:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.4
4583:::X20ug.ml.KCN.vs.DMSO.6hrs
4583:::X2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
4615:::AA_30uM_2h_05
4615:::L2A_30uM_30min_07
4615:::PA_5uM_10.min_01
4615:::Starvation_1254_24h_03
4615:::Starvation_1254_5d_03
4615:::Starvation_1254_OA50_24h_03
4615:::Starvation_1254_PA50_6h_02
4699:::CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.1
4731:::X2ug.ml.PA.824.vs.DMSO.6hrs.rep.1
4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.1
4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.1
4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.2
Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.2
Raghavan_Nature2008:::espR.mutant..R...rep2
Rohde_CellHostMicrobe2007:::CDC1551.ctrl.vs.pH.5.5.7H9.broth.for.2.hr

[+] Show/hide bicluster #65 rows (genes).

bicluster 65 genes Mycobacterium tuberculosis H37Rv 16

RV0315
RV0760C
RV0761C
RV1078
RV1241
RV1242
RV1589
RV1590
RV1591
RV2211C
RV2213
RV2911
RV2929
RV3791
RV3794
RV3795

[+] Show/hide bicluster #65 rows (short gene names).

bicluster 65 short names Mycobacterium tuberculosis H37Rv 16 short_name

RV0315	Rv0315
RV0760C	Rv0760c
RV0761C	adhB
RV1078	pra
RV1241	Rv1241
RV1242	Rv1242
RV1589	bioB
RV1590	Rv1590
RV1591	Rv1591
RV2211C	gcvT
RV2213	pepB
RV2911	dacB2
RV2929	Rv2929
RV3791	Rv3791
RV3794	embA
RV3795	embB

[+] Show/hide bicluster #65 rows (long gene names).

bicluster 65 long names Mycobacterium tuberculosis H37Rv 16 long_name

RV0315	POSSIBLE BETA-1,3-GLUCANASE PRECURSOR
RV0760C	hypothetical protein
RV0761C	POSSIBLE ZINC-CONTAINING ALCOHOL DEHYDROGENASE NAD DEPENDENT ADHB
RV1078	Probable Proline-rich antigen homolog pra
RV1241	hypothetical protein
RV1242	hypothetical protein
RV1589	biotin synthase
RV1590	hypothetical protein
RV1591	PROBABLE TRANSMEMBRANE PROTEIN
RV2211C	glycine cleavage system aminomethyltransferase T
RV2213	leucyl aminopeptidase
RV2911	PROBABLE D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACB2 (PENICILLIN-BINDING PROTEIN) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE) (PBP) (DD-TRANSPEPTIDASE) (SERINE-TYPE D-ALA-D-ALA CARBOXYPEPTIDASE) (D-AMINO ACID HYDROLASE)
RV2929	hypothetical protein
RV3791	short chain dehydrogenase
RV3794	INTEGRAL MEMBRANE INDOLYLACETYLINOSITOL ARABINOSYLTRANSFERASE EMBA (ARABINOSYLINDOLYLACETYLINOSITOL SYNTHASE)
RV3795	INTEGRAL MEMBRANE INDOLYLACETYLINOSITOL ARABINOSYLTRANSFERASE EMBB (ARABINOSYLINDOLYLACETYLINOSITOL SYNTHASE)

[+] Show/hide bicluster #65 rows (NCBI RefSeq gene IDs).

bicluster 65 NCBI RefSeq IDs Mycobacterium tuberculosis H37Rv 28

NP_214829
NP_214829.1
NP_215274
NP_215274.1
NP_215594
NP_215594.1
NP_215757
NP_215757.1
NP_215758
NP_215758.1
NP_216105
NP_216105.1
NP_216106
NP_216106.1
NP_216107
NP_216107.1
NP_216727
NP_216727.1
NP_216729
NP_216729.1
NP_217445
NP_217445.1
NP_218308
NP_218308.1
NP_218311
NP_218311.1
NP_218312
NP_218312.1

[+] Show/hide bicluster #65 gene upstream sequences.

bicluster 65 upstream sequences Mycobacterium tuberculosis H37Rv 16 upstream

RV0315	CCACGTCGGCTAGCGGCCGCTCCAGTTCCCGGATTCGCGCCTCCGGGTCATCCTCTGGGTTCATGCACAGATGCTCCCACACGACGATCATGCCGCATAGGTAGTTGCGCCCGGCGGCACCACACGATTCGGCTTGGCCTGCTATCGTCCCATGCTTATGCCTGAGATGG
RV0760C	CAAAGTGCCGGGCTATTACCCGCTCGGCAAGACGCCGGTGCCACTGTGGTAAACGCCCTAGCGCCGTTGACCTACACTCAGCCAGTCGGCGTTCCGGCCGAGGCTAGGGACCACTCGTAGCCGAAGTTCAACGATGAAAGCAGGTTTGCGGTGAAGACCAAGGGCGCACT
RV0761C	CAAAGTGCCGGGCTATTACCCGCTCGGCAAGACGCCGGTGCCACTGTGGTAAACGCCCTAGCGCCGTTGACCTACACTCAGCCAGTCGGCGTTCCGGCCGAGGCTAGGGACCACTCGTAGCCGAAGTTCAACGATGAAAGCAGGTTTGCGGTGAAGACCAAGGGCGCACT
RV1078	AGGCGGCCAGTGCCGCACAGGTCGTGGGCACTGACCCATTGGGCCCCGTGGCTCATCTCACCGCCGGGCGTTCCGGTGAATCCGGTCCTCAGGTACTGTAGTCCCGCCTAGTTCACCCTAGTTCAGCTGAACCTCAGTGGAAGGTGTGCCCATGACCGAACAGCCGCCCC
RV1241	CCGCGGCCGGATCGACAAGTCAACCGCCGAGTTGGCTGACGAGCGCAGCGCGGTCACCGAGCTCGGCCTGATCTGAGCGCAGGTCAGCCGCGCACTGAGCGGAGCCCGAGTCATCTTGACGTGTGTTTGTCCAGGCATCATGATGACCTGTATGCGCACCACCTTGACGC
RV1242	CCGCGGCCGGATCGACAAGTCAACCGCCGAGTTGGCTGACGAGCGCAGCGCGGTCACCGAGCTCGGCCTGATCTGAGCGCAGGTCAGCCGCGCACTGAGCGGAGCCCGAGTCATCTTGACGTGTGTTTGTCCAGGCATCATGATGACCTGTATGCGCACCACCTTGACGC
RV1589	GCTGCCAACGATCCGTGACCTCCGCCCACGTCGCGTTTGTCCCCGTGCGCACCGCTACCGTAGCCTGAACACCGTTTCATTCAGGCCGCCGAGCAGGCGGCGGATGGGTTCCGCGCGTGCGGAGATGACGAAGGATGCAGGGGAGTACCTGGTGACGCAAGCGGCAACGC
RV1590	GCTGCCAACGATCCGTGACCTCCGCCCACGTCGCGTTTGTCCCCGTGCGCACCGCTACCGTAGCCTGAACACCGTTTCATTCAGGCCGCCGAGCAGGCGGCGGATGGGTTCCGCGCGTGCGGAGATGACGAAGGATGCAGGGGAGTACCTGGTGACGCAAGCGGCAACGC
RV1591	GCTGCCAACGATCCGTGACCTCCGCCCACGTCGCGTTTGTCCCCGTGCGCACCGCTACCGTAGCCTGAACACCGTTTCATTCAGGCCGCCGAGCAGGCGGCGGATGGGTTCCGCGCGTGCGGAGATGACGAAGGATGCAGGGGAGTACCTGGTGACGCAAGCGGCAACGC
RV2213	ACATGTTGCCAGACTGGCCTGCCCTCGCCCATGGCCCATTGACGCTCAAGGGGTTTGACGCCCCGGTGATGGCCTTCGAACTGCACGACAACCCTCGTGCGAGGGATGCTGACACGCCAAGCCCCGCCGCCAGTGATTAGGGTGGTTGCCCGTGACCACCGAACCGGGTT
RV2911	TAGTCCACCAGCAACTGCTGGATTTCCAACCGGTCGGAAATTTCGGCCACGCTCAACATGCTCCGATCCAACACCGCACACATCGGCCGGACAGCCCCCGACCAGCCCGAGAATAGGCCTACCGGAGCCCTGGAAGTTAAACTCTGCGCCCATGCGAAAGCTCATGACCG
RV2929	GATTGGATCGCAACGCAAGACGACATGGATCCGTGGCGCGATCGGACGACGGAAGAGTTCTCTATCCGTGTATTCCCTGGGGATCACTTCTACCTCAACGACAATTTGCCAGAGCTAGTCAGCGACATAGAAGACAAAACACTCCAATGGCATGATCGAGCTTAGCTATG
RV3791	ACTCTTGCACTACCGGGCGTGGGCCATCCCCGTCGCGTTTGTGATCGCGCAGGGCACCGCCACGGTAATCAACTTCATCGTGCAGCGAGCCGTGATCTTCCGGATCCGCTGAGCCGGTCAGGGTCGAATCGGGCGGGTACCCTCTTTGACGATGTTGAGCGTGGGAGCTA
RV3794	ACTCTTGCACTACCGGGCGTGGGCCATCCCCGTCGCGTTTGTGATCGCGCAGGGCACCGCCACGGTAATCAACTTCATCGTGCAGCGAGCCGTGATCTTCCGGATCCGCTGAGCCGGTCAGGGTCGAATCGGGCGGGTACCCTCTTTGACGATGTTGAGCGTGGGAGCTA
RV3795	ACTCTTGCACTACCGGGCGTGGGCCATCCCCGTCGCGTTTGTGATCGCGCAGGGCACCGCCACGGTAATCAACTTCATCGTGCAGCGAGCCGTGATCTTCCGGATCCGCTGAGCCGGTCAGGGTCGAATCGGGCGGGTACCCTCTTTGACGATGTTGAGCGTGGGAGCTA
RV2211C	ACAACCGGCCGCGGCGTTCGGCTTGCACCATCTCTTCGACCGTGAAGCCAAGCTCATCCAGGTAGGTGAGCAAGCCGGCCCGCTCGCGTGGGTTGGCAATTCCGGCGGCCTCGAGGGCGTCGAAGTCCAAGGAATCGTACACCTGCCTAAGTGTGCCAGCAGGGACGCCC

[+] Show/hide bicluster #65 columns (arrays; conditions).

bicluster 65 arrays Mycobacterium tuberculosis H37Rv 59

2867:::H37Ra..7H9.shake.replicate.4
4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.2
4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.3
4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.1
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.2
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.3
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.4
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.3
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.4
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.2
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.2
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.3
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.3
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.20min...0.05.mM.DETA.NO.40min.rep.1
4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.20min...0.05.mM.DETA.NO.40min.rep.2
4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1
4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3
4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.3
4062:::MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.3
4084:::High.iron.wt.vs.high.iron.ideR.Complement.2b
4107:::PBS.Tween.7H9
4107:::pH4.8vspH6.8..5.5h.
4107:::X0.1mg.mLTriclosanvsEtOH.6hC
4107:::X0.1mM.GSNO.DMSO..3.5h
4107:::X0.1mMGSNO.20ug.mLCPZvsDMSO.6hA
4107:::X0.4ug.mL.PA824.DMSO..6h..4
4107:::X200uM.Dipyridylvsctrl..6h
4107:::X200uM.Dipyridylvsctrl..6hA
4107:::X20ug.mL.KCN.DMSO..6h
4107:::X20ug.mLProcept6778vsDMSO.6hA
4107:::X25ug.mLCPZ.0.1mMGSNO.DMSO..2
4107:::X2ug.mL..111895vsDMSO..6hA
4107:::X2ug.mL.PA824.DMSO..6h..1
4107:::X2ug.mL.PA824.DMSO..6h..2
4107:::X50ug.mL.Triclosan.EtOH
4107:::X50ug.mL.TriclosanvsEtOH..6h
4363:::H37Rv.hypoxia.4.day.rep.2
4583:::X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.1
4583:::X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
4583:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.3
4583:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.4
4583:::X20ug.ml.KCN.vs.DMSO.6hrs
4583:::X2ug.ml.PA.824.vs.DMSO.6hrs.rep.2
4615:::AA_30uM_2h_05
4615:::L2A_30uM_30min_07
4615:::PA_5uM_10.min_01
4615:::Starvation_1254_24h_03
4615:::Starvation_1254_5d_03
4615:::Starvation_1254_OA50_24h_03
4615:::Starvation_1254_PA50_6h_02
4699:::CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.1
4731:::X2ug.ml.PA.824.vs.DMSO.6hrs.rep.1
4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.1
4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.1
4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.2
Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.2
Raghavan_Nature2008:::espR.mutant..R...rep2
Rohde_CellHostMicrobe2007:::CDC1551.ctrl.vs.pH.5.5.7H9.broth.for.2.hr

[+] Show/hide bicluster #65 ratios.

bicluster 65 ratios Mycobacterium tuberculosis H37Rv 16x59

GENES 2867:::H37Ra..7H9.shake.replicate.4 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.20min...0.05.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.20min...0.05.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.3 4084:::High.iron.wt.vs.high.iron.ideR.Complement.2b 4107:::PBS.Tween.7H9 4107:::pH4.8vspH6.8..5.5h. 4107:::X0.1mg.mLTriclosanvsEtOH.6hC 4107:::X0.1mM.GSNO.DMSO..3.5h 4107:::X0.1mMGSNO.20ug.mLCPZvsDMSO.6hA 4107:::X0.4ug.mL.PA824.DMSO..6h..4 4107:::X200uM.Dipyridylvsctrl..6h 4107:::X200uM.Dipyridylvsctrl..6hA 4107:::X20ug.mL.KCN.DMSO..6h 4107:::X20ug.mLProcept6778vsDMSO.6hA 4107:::X25ug.mLCPZ.0.1mMGSNO.DMSO..2 4107:::X2ug.mL..111895vsDMSO..6hA 4107:::X2ug.mL.PA824.DMSO..6h..1 4107:::X2ug.mL.PA824.DMSO..6h..2 4107:::X50ug.mL.Triclosan.EtOH 4107:::X50ug.mL.TriclosanvsEtOH..6h 4363:::H37Rv.hypoxia.4.day.rep.2 4583:::X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.1 4583:::X0.2ug.ml.PA.824.vs.DMSO.6hrs.rep.2 4583:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.3 4583:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.4 4583:::X20ug.ml.KCN.vs.DMSO.6hrs 4583:::X2ug.ml.PA.824.vs.DMSO.6hrs.rep.2 4615:::AA_30uM_2h_05 4615:::L2A_30uM_30min_07 4615:::PA_5uM_10.min_01 4615:::Starvation_1254_24h_03 4615:::Starvation_1254_5d_03 4615:::Starvation_1254_OA50_24h_03 4615:::Starvation_1254_PA50_6h_02 4699:::CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.1 4731:::X2ug.ml.PA.824.vs.DMSO.6hrs.rep.1 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.1 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.2 Raghavan_Nature2008:::espR.mutant..R...rep2 Rohde_CellHostMicrobe2007:::CDC1551.ctrl.vs.pH.5.5.7H9.broth.for.2.hr RV0315 0.377714825306893 0.105389181168218 0.885269121813031 0.674490759476595 -2.38179549440173 -2.40287333063537 -2.78227438284096 -2.14993929583165 -2.18155605018211 -2.06562795089707 -0.200239444219614 -2.5609571023877 -2.97197490894375 -1.02227505733171 -1.20143666531769 -0.8220356131121 0.263472952920545 0.41101780655605 0.379401052205585 1.35952043707001 -0.925 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.496670468341857 NA NA NA NA NA NA 1.34898151895319 1.1592809928504 -1.62299338999056 -4.32095642789694 -2.69796303790638 -2.69796303790638 -2.27640631323351 2.00524279844393 -7.0381644467123 NA 0.895288182982386 NA -0.947137558004812 -0.891166547494983 -3.55575002224803 RV0760C 0.694328722990613 0.519689601563934 0.387002894781653 0.751891338432926 -2.33307459425511 -2.04558672956017 -2.68690581234119 -2.06770118069055 -2.50999020329815 -2.22250233860321 0.574975729389884 -2.00135782729941 -0.630261857215835 -0.353831218086083 -0.398060120346843 0.0663433533911405 1.09466533095382 1.13889423321458 0.740834112867735 0.574975729389884 -0.646386977831737 -1.08298516310326 0.892987766067605 0.759989588142642 -0.531992711699849 NA -4.33194065241306 -1.19698360132466 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0.674490759476595 -0.728450020234723 -0.269796303790638 0.836368541750978 0.0809388911371914 -1.55 -2.05279796362442 -1.40763288934246 0.0586513703892691 0.439885277919519 -0.733142129865864 -6.74490759476595 -3.31380242699371 -0.410559592724884 -5.77715998334301 0.175954111167807 -2.90324283426882 -1.55426131531563 -4.39885277919519 -7.91793500255133 -8.97365966955818 -0.791793500255134 NA 0.685922806247385 -2.19495297999163 -5.4645183564375 -5.2358774210217 -4.48136233414958 -6.15044116268488 1.10166824047844 0.0224830253158865 -0.224830253158865 -2.40568370879986 -3.3274877467512 -2.18085345564099 -3.10265749359234 2.45439693031761 -3.78540732359314 -1.325 0.862862052663753 -5.67827104489599 -0.899392085 -1.565 -4.57188082421275

[+] Show/hide bicluster #65 motif PSSM #1.

bicluster 65 motif PSSM #1 Mycobacterium tuberculosis H37Rv 18x4

POSITION A C G T 1 0 1 0 0 2 0.1 0.5 0 0.4 3 0.4 0.1 0.2 0.3 4 0 0.9 0 0.1 5 0 0 0.6 0.4 6 0.8 0.1 0.1 0 7 0.1 0.9 0 0 8 0 1 0 0 9 0.1 0.1 0.4 0.4 10 0.1 0.1 0.6 0.2 11 0.3 0.3 0.1 0.3 12 0.4 0.1 0.3 0.2 13 0.1 0.8 0.1 0 14 0 0.1 0.8 0.1 15 0.4 0.1 0.4 0.1 16 0 0.8 0.2 0 17 1 0 0 0 18 0.8 0.1 0 0.1

[+] Show/hide bicluster #65 motif PSSM #2.

bicluster 65 motif PSSM #2 Mycobacterium tuberculosis H37Rv 13x4

POSITION A C G T 1 0 0 1 0 2 0.666667 0 0.333333 0 3 1 0 0 0 4 0.166667 0 0.833333 0 5 0.166667 0 0.166667 0.666667 6 0.166667 0.166667 0 0.666667 7 0.166667 0.833333 0 0 8 1 0 0 0 9 0.5 0.5 0 0 10 0 0.333333 0.666667 0 11 0 0 0.833333 0.166667 12 0.666667 0.333333 0 0 13 0.166667 0 0 0.833333