Bicluster 73 (zzz

GENES 2885:::H37Rv..7H9.roll.replicate.4 2885:::Strain.9802826..replicate.4 2885:::Strain.CDC1551..replicate.1 2885:::Strain.CDC1551..replicate.2 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.1 4060:::H37Rv.wild.type.Vs.H37Rv.sigE.null.mutant.rep.2 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.4 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.2 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.005.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.01.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.3 4062:::MTB1254.Day.0.rep.1 4062:::MTB1254.Day.0.rep.2 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.3 4082:::H37Rv.wild.type.Vs.Rv3676.null.3 4082:::Rv3676.null.Vs.H37Rv.wild.type.3 4084:::High.iron.wt.vs.low.iron.wt.2a 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.2 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.4 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.2 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.5 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.vs..MTB1254.rep1 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.4 4099:::H37Rv.hypoxia.2hr.rep.1 4101:::H37Rv.Day.0.rep.1 4101:::H37Rv.Day6.1 4101:::H37Rv.Day6.2 4101:::H37Rv.Day8.3 4101:::NRP.Day20..2 4101:::NRP.Day30..1 4107:::DIPED..50ug.mL..DMSO..12h 4107:::DIPED.50ug.mL.vs.DMSO.12h.1 4107:::EMB.10ug.mL.vs.DMSO.12h.1 4107:::Mtm.0.2ug.mL.vs.ctrl.12h.1 4107:::pH4.8vspH6.8..5h. 4107:::pH5.2vspH6.8..5h. 4107:::X.109..0.1ug.mL..vs.DMSO..12h..GEO.acc.GSM28050. 4107:::X.109..1ug.mL..vs.DMSO..12h..replicate.2..GEO.acc.GSM28052. 4107:::X0.12mg.mL.BZAvspH5.6..11h. 4107:::X0.12mg.mL.PZA.pH5.6..4h..1 4107:::X0.13mg.mL.TLMvsDMSO..6h 4107:::X0.1mM.GSNOvsDMSO..6h 4107:::X0.1mMGSNO.10ug.mLmdvsDMSO.6h 4107:::X0.1ug.mL.Mtmvsctrl..1.5h. 4107:::X0.2ug.mL.Mtmvsctrl..4h.B 4107:::X0.5ug.mL..111891vsDMSO.6hA 4107:::X1.2mg.mL.PZAvspH5.6..4h. 4107:::X1.2mg.mL.PZAvspH5.6..4h.B 4107:::X10ug.mL..59vsDMSO..6h 4107:::X10ug.mL.LevovsEtOH..6hA 4107:::X10ug.mL.TetvsEtOH..6h 4107:::X1mM.DTNBvsDMSO..6h 4107:::X1uM.ValinomycinvsDMSO..6h 4107:::X20ug.mL.methoxatinvsDMSO..6h 4107:::X25ug.mL.CPZvsDMSO..6h.B 4107:::X2mMb.mercaptoethanolvsDMSO.6h 4107:::X2ug.mL.SMvsEtOH..6hA 4107:::X40mJ.UV.ctrl..6h. 4107:::X4mM.H2O2.ctrl..4h...1 4363:::H37Rv.hypoxia.1.day.rep.9 4363:::H37Rv.hypoxia.4.day.rep.1 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3 4489:::MTB1254.Opp.KO.complemented.vs.Opp.KO.in.7H9OADC..OD..1.0.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.3 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.2 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.5 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.4 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.4 4575:::Whole.Lung.Surfactant.30min.rep.1 4583:::X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1 4583:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.1 4583:::X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection.rep.2 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2.hrs..DS..rep.3 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages..DS..rep.2 4615:::AA_30uM_10.min_04 4615:::AA_60uM_24h_02 4615:::aceatate.induction.3 4615:::Acetate.3mM.30m.04 4615:::CA_50uM_10min_01 4615:::CK.for.MDG.24h.PA.NA 4615:::CK.OA_NA_2H 4615:::CK.PA.NA.2h.02..100901 4615:::L2A_30uM_2h_05 4615:::L2A_30uM_4h_07 4615:::MDA_1254.pMV261_03 4615:::MDA_1254.pMV261.3524_03 4615:::MDG_1254.pMV261.3524_03 4615:::MDG_1254.pMV261.3524_04 4615:::MTB1254.0494.4._OA_30MIN_01 4615:::MTB1254.3524.1._OA_10min_01 4615:::MTB1254.3524.1.T0_WtT0_02 4615:::MTB1254.B4.1._OA_30MIN_02 4615:::MTB1254.B4.1.Compl._PA_30MIN_04 4615:::MTB1370_PA50_1h_01 4615:::OA_50uM_24h_02 4615:::PA_50uM_10.min_02 4615:::PA_50uM_12h_01 4615:::PA_50uM_1h_02 4615:::PA_50uM_1h_04 4615:::PA_50uM_24h_08 4615:::PA_50uM_2h_06 4615:::PA_50uM_30min_03 4615:::PA_50uM_3d_04 4615:::PA_50uM_3d_05 4615:::PA_50uM_4h_02 4615:::PA_50uM_4h_07 4615:::PA_50uM_4h_T0_01 4615:::PA_50uM.AA_30uM_2h_03 4615:::PA_50uM.MAPP_4h_01 4615:::PA_50uM.OA_10uM_24h_02 4615:::PA_50uM.OA_10uM_4h_02 4615:::PA_50uM.OA_10uM_4h_04 4615:::PA_50uM.OA_30uM_2h_02 4615:::Rv.MT90_100503_02 4615:::Rv.p0485.1. 4615:::Rv.p0485.1._OK 4615:::TBD097 4615:::TBD1268 4615:::TBD1276 4615:::TBD817 4615:::TBF466 4615:::Test_261B4.1 4615:::Test_361.1 4615:::Test_ceramide_5uM 4615:::Tet_50ng_30M_01 4615:::WM_1254_vs_1254whiB4_20day 4615:::WT_85.1_OA_10min_01 4615:::X7H9_MTB1254.3524.1._OA50_10M_01 4615:::X7H9_PA_50uM_4h_T0_02 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak.4hr.rep.1 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.3 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3 4703:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4731:::X5ug.ml.Rifampicin.vs.DMSO.2.5hrs 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.1 4799:::H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1 4799:::H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.24.hr.rep.3 4802:::H37Rv.ctrl.vs.relE2.overexpression.6.hr.rep.3 4802:::H37Rv.ctrl.vs.relE3.overexpression.6.hr.rep.3 4815:::H37Rv.reaeration.for.1hrs.rep.1 4815:::H37Rv.reaeration.for.24hrs.rep.3 Raghavan_Nature2008:::WT.TB.rep3 Rohde_CellHostMicrobe2007:::CDC1551.ctrl..vs.2.hr.after.macrophage.infection Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.48hrs RV0848 1.89317292716726 0.00766466772132478 0.866107452509719 -0.222275363918423 0.994588069058708 -1.39470970603635 -0.513897721505977 -0.0428248101254981 0.952852025292333 2.08770949361803 1.93782265817879 0.149886835439243 1.40251253161006 -0.0642372151882472 -0.33189227847261 -0.653078354413846 0.0535310126568727 0.374717088598109 -1.10273886073158 -1.15626987338845 NA -0.463712397140159 0.463712397140159 -0.72955122963795 2.96333645147094 2.7864208424279 0 3.95848675233805 4.57769138398869 4.35654687268489 -0.840349142954446 -0.597090180520265 0.707662436172165 0.199030060173421 -1.70281273703927 -0.716646431943883 -0.0421556724672872 -1.75090409480568 -1.42751811423471 -1.19652812811259 -0.780746153092771 2.60094724373509 1.53839330757333 0.0439885277919519 -0.630502231684643 1.29033014856392 -0.54252517610074 1.12903887999343 0.953084768825624 -0.982410454020258 -0.527862333503422 -0.102639898181221 -0.205279796362442 1.11437603739611 -0.571850861295374 2.25807775998686 -0.586513703892692 -0.205279796362442 -0.615839389087326 2.84459146387955 2.44869471375199 1.93549522284588 -0.557188018698057 1.02639898181221 -0.601176546490009 3.12318547322858 -0.835782028047085 NA -1.59824984310758 0.571850861295374 -0.938421926228306 -0.86510771324172 -0.589578621110183 -0.775424056025349 0.799977412402473 1.1293798763329 NA NA NA -0.281037816448581 -0.363475575940165 1.50261552527841 -1.01548331010087 -0.573317145555106 0.845971461038441 -0.0293256851946346 -0.86510771324172 0.586513703892691 NA NA NA -0.455281262646702 0.556454876568191 -1.1297720221233 -0.370969917712127 -0.0505868069607446 -0.320383110751383 -0.421556724672872 0.0843113449345744 -0.286658572777553 -0.859975718332659 -0.607041683528936 -0.640766221502765 -0.826251180358829 -1.16349656009713 1.29839471199245 0.623903952515851 -0.893700256306489 0.859975718332659 0.236071765816808 1.28153244300553 -0.623903952515851 1.06232294617564 0.202347227842979 1.1297720221233 2.57992715499798 0.219209496829893 4.46850128153244 1.71995143666532 -0.708215297450425 -0.370969917712127 2.56306488601106 6.37393767705382 5.14299204100904 -0.337245379738298 0.370969917712127 -0.185484958856064 -0.455281262646702 -0.337245379738298 0.674490759476595 0.961149332254148 -0.961149332254148 -0.961149332254148 0.472143531633617 0.404694455685957 -0.101173613921489 -0.708215297450425 -0.438418993659787 -0.556454876568191 -1.39956832591394 0.168622689869149 -0.843113449345744 0.118035882908404 -1.01173613921489 -1.33211924996628 1.19722109807096 -0.419372492938816 0.740891404191908 -0.335497994351053 1.14571033116572 0.813084751149868 -0.66525116003171 -0.369583977795395 2.51809883537929 -0.112415126579433 -1.55975988128963 -1.04335289356536 -0.368862134088763 -1.58743784806108 -0.518839045751227 -0.470007135562876 NA 0.892068423823884 0.00709990273133259 -0.773889397715251 -1.5690785036245 0 0 0.285 -0.177050453257251 -0.674490759476595 RV0849 0.389494663923104 0.674490759476595 -0.199497266887444 -0.427494143330236 0.974264430355082 -1.68622689869149 1.07305348098549 0.214610696197099 1.16502949364139 3.43377113915358 2.23808297462688 -0.521197405050096 1.56359221515029 -0.613173417705996 -0.398562721508897 -0.521197405050096 -0.766466772132495 -0.153293354426499 -2.05413094931509 -0.459880063279497 NA -0.621241488991601 0.621241488991601 NA 0.227444558428154 0.556847022358584 NA 2.188173510395 2.20385934201074 1.67054106707575 -0.00784291580786739 -1.93720020454324 0.901935317904749 2.36071765816808 -0.54116119074285 -0.16129126857049 0.16129126857049 -1.79451669952489 -1.3737334734294 -1.43561335961991 -0.284647476476361 1.68313290438196 -0.123759772381027 -0.316167543504654 -0.800957776878457 0.569101578308377 -0.168622689869149 0.843113449345744 0.0210778362336436 0.442634560906516 -0.716646431943882 -0.442634560906516 -1.18035882908404 0.442634560906516 -1.41221502765412 1.6440712262242 -1.09604748414947 -0.210778362336436 -0.548023742074734 2.23425064076622 2.08670578713072 NA -0.337245379738298 0.337245379738298 NA 0.75880210441117 -2.63472952920545 NA -0.75880210441117 0.463712397140159 0 NA -1.02071225198359 -0.889917465925394 0 -0.2 NA NA NA -0.802644003777148 -0.451908808849319 0.640766221502765 NA NA 0.470870907559132 0.153831225845539 -2.33113473012086 0.24849659559664 NA NA NA -0.366152126573009 0.0385423291129483 0 -0.635948430363647 -0.23125397467769 NA 0.0192711645564742 0.944287063267233 0.346880962016535 -0.828660075928388 -0.501050278468328 -0.539592607581276 -0.713033088589544 -0.732304253146018 0.55886377213775 0.0385423291129483 1.00210055693666 1.38752384806614 0.0385423291129483 1.36825268350966 -0.713033088589544 -0.385423291129483 0.770846582258966 0.0963558227823707 -0.346880962016535 -1.34898151895319 NA -0.0770846582258966 -0.578134936694224 -0.154169316451793 1.61877782274383 0.847931240484863 1.52242199996146 -0.0578134936694224 0.308338632903586 0.46250794935538 0.481779113911854 -0.327609797460061 1.25262569617082 1.1177275442755 0.520321443024802 0.520321443024802 1.1948122025014 1.59950665818735 0.501050278468328 0.173440481008267 -0.173440481008267 -1.23335453161435 -3.77714825306893 -0.134898151895319 -1.1948122025014 -0.134898151895319 -0.443236784798905 -1.32971035439672 1.27189686072729 -0.647511129097532 0.836368541750978 -0.472143531633617 0.557188018698057 0.478986191512365 -0.791793500255134 -1.00684852501579 1.41643059490085 0.553082422770808 -1.61663658223755 -1.26333189870219 -0.042824810125498 -1.58505328477 -0.843113449345744 NA NA 1.73350428837443 NA NA NA 0.610487986679546 0.196931608606305 -0.191744864734149 -0.175595179526325 -0.224830253158864 RV0850 NA NA NA NA 1.6 -1.35 -0.495104919190267 0.0358771680572657 0.825174865317111 1.09784134255233 NA -0.00717543361145315 -0.0215263008343594 -0.0645789025030783 -0.322894512515391 -0.98303440476908 -0.322894512515391 0.595560989750611 -0.509455786413173 -0.710367927533861 NA -0.553428315467976 0.553428315467976 -0.925015898710759 0.26497851265152 -0.722668670867781 0.698579715172188 0.650401803781003 -0.192711645564742 0.216800601260334 -0.481779113911854 -1.22853674047523 0.554045980998632 -0.0240889556955927 0.505868069607446 -1.51760420882234 0.75880210441117 -0.853652367462566 -1.09604748414947 -0.748263186294348 -0.70610751382706 1.60191555375691 0.0843113449345744 -0.0805362100867576 -1.10737288869292 1.26844530886643 -0.0402681050433788 0.765093995824197 0.523485365563925 -0.221474577738583 -0.241608630260273 0.201340525216894 NA -1.20804315130136 -1.06710478364954 2.13420956729908 0.34227889286872 1.16777504625799 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