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[+] Show/hide bicluster #74 rows and columns.
bicluster 74
Mycobacterium tuberculosis H37Rv
6x205
[+] Show/hide bicluster #74 rows (genes).
bicluster 74 genes
Mycobacterium tuberculosis H37Rv
6
[+] Show/hide bicluster #74 rows (short gene names).
bicluster 74 short names
Mycobacterium tuberculosis H37Rv
6
short_name
[+] Show/hide bicluster #74 rows (long gene names).
bicluster 74 long names
Mycobacterium tuberculosis H37Rv
6
long_name
[+] Show/hide bicluster #74 rows (NCBI RefSeq gene IDs).
bicluster 74 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
12
[+] Show/hide bicluster #74 gene upstream sequences.
bicluster 74 upstream sequences
Mycobacterium tuberculosis H37Rv
6
upstream
[+] Show/hide bicluster #74 columns (arrays; conditions).
bicluster 74 arrays
Mycobacterium tuberculosis H37Rv
205
[+] Show/hide bicluster #74 ratios.
bicluster 74 ratios
Mycobacterium tuberculosis H37Rv
6x205
GENES 2867:::H37Ra..Dubos.media.replicate.3 2867:::H37Ra..Youman.media.replicate.1 2867:::H37Ra..Youman.media.replicate.2 2867:::H37Rv..Dubos.media.replicate.3 2867:::H37Rv..Sauton.s.media.replicate.3 2867:::H37Rv..Youman.media.replicate.2 2885:::H37Rv..7H9.roll.replicate.2 2885:::H37Rv..7H9.roll.replicate.4 2885:::Strain.3160...replicate.3 2885:::Strain.9700665..replicate.2 2885:::Strain.9700665..replicate.3 2885:::Strain.9700665..replicate.4 2885:::Strain.9802501..replicate.2 2885:::Strain.CDC1551..replicate.3 2885:::Strain.M3061a..replicate.2 4055:::H37Rv.Vs.M.bovis.rep4 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.1 4060:::H37Rv.wild.type.Vs.H37Rv.sigE.null.mutant.rep.2 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.2 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.3 4084:::High.iron.wt.vs.high.iron.ideR.Complement.2b 4084:::High.iron.wt.vs.high.iron.ideR.Complement.3b 4084:::High.iron.wt.vs.high.iron.ideR.KO.2b 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.1 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.4 4100:::H37Rv.0.2..Oxygen..2h..3 4101:::H37Rv.Day.0.rep.3 4101:::H37Rv.Day14.3 4101:::H37Rv.Day24.1 4101:::H37Rv.Day24.3 4101:::H37Rv.Day60.1 4101:::H37Rv.Day8.3 4101:::NRP.Day12..3 4101:::NRP.Day14..1 4101:::NRP.Day8..1 4107:::DIPED..100ug.mL..DMSO..12h..1 4107:::DIPED..50ug.mL..DMSO..12h 4107:::X0.2ug.mL..111891.DMSO..5.5h..3 4107:::X0.2ug.mL.Mtmvsctrl..4h.B 4107:::X0.5ug.mL.CeruleninvsDMSO..6hA 4107:::X0.5ug.mLRifapentinevsEtOH.6hA 4107:::X100uM.DCCD.DMSO..6h 4107:::X10ug.mL.EMBvsDMSO..6h 4107:::X10ug.mL.Nvb.DMSO..6h..2 4107:::X10ug.mL.Nvb.DMSO..6h..3 4107:::X1mM.DNP.DMSO..6h..2 4107:::X1ug.mL..109vsDMSO..6hA 4107:::X1ug.mL..124196vsDMSO..6hA 4107:::X50ug.mL.Triclosan.EtOH 4107:::X5ug.mL.CFZ.0.1mM.GSNO.DMSO..2 4107:::X6ug.mL.MenadionevsDMSO..6h 4363:::H37Rv.hypoxia.1.day.rep.10 4363:::H37Rv.hypoxia.12hr.rep.1 4363:::H37Rv.hypoxia.12hr.rep.3 4363:::H37Rv.hypoxia.7.day.rep.2 4363:::H37Rv.hypoxia.7.day.rep.4 4363:::H37Rv.hypoxia.8hr.rep.1 4364:::H37dosR.mutant.hypoxia.1.day.rep.1 4364:::H37dosR.mutant.hypoxia.1.day.rep.2 4364:::H37dosR.mutant.hypoxia.1.day.rep.5 4364:::H37dosR.mutant.hypoxia.12hr.rep.3 4364:::H37dosR.mutant.hypoxia.7.day.rep.1 4364:::H37dosR.mutant.hypoxia.8hr.rep.2 4365:::H37Rv.diamide.1h.rep.4 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.3 4396:::Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.1 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.4 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.5 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.2 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.1 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.6 4575:::Extracted.Lung.Surfactant.2hrs.rep.1 4581:::H37Rv.Ctrl.vs.2.ug.ml.garlic.extract.6hrs.rep2 4596:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6 4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.1 4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.3 4599:::H37Rv.grown.in.7H9.vs.H37Rv.24hrs.after.infection.in.macrophages.rep.5 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.1 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection.rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media.rep.2 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media.rep.3 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages.rep.1 4615:::AA_10uM_10min_01 4615:::AA_30uM_2h_02 4615:::AA_30uM_2h_03 4615:::AA_30uM_2h_04 4615:::AA_30uM_2h_05 4615:::aceatate.induction.1 4615:::Acetate.3mM.10m.07 4615:::CHP.AA.24h.1 4615:::CHP25uM_24h.50uMOA_30min_01 4615:::CK.for.AA.NA.4h 4615:::CK.for.MDG.4h.PA.NA 4615:::CK.for.OA.NA..2h 4615:::CK.PA.Na.4h.2 4615:::Glycerol_1._30M_01 4615:::L2A_30uM_10min_02 4615:::L2A_30uM_1h_04 4615:::L2A_30uM_1h_05 4615:::L2A_30uM_2h_03 4615:::L2A_30uM_30min_05 4615:::MTB1248_PA50_1h_01 4615:::MTB1254_FA5_10min_02 4615:::MTB1254.0485.14._01 4615:::MTB1254.3524.1._PA_12h_01 4615:::MTB1254.3524.1._PA_12h_05 4615:::MTB1254.3524.1._PA_12h_06 4615:::MTB1254.B4.1._PA_30MIN_02 4615:::MTB1254TA1_OA.30min_04 4615:::MTB1254vsMTB1254.0494.4. 4615:::OA_50uM_1h_09 4615:::OA_50uM_24h_01 4615:::OA_50uM_24h_04 4615:::OA_50uM_4h_01 4615:::OA_50uM_4h_08 4615:::OA_50uM_4h_09 4615:::PA_300uM_24h_T0_01 4615:::PA_50uM_12h_04 4615:::PA_50uM_12h_05 4615:::PA_50uM_24h_01 4615:::PA_50uM_4h_04 4615:::PA_50uM_4h_T0_01 4615:::PA_50uM_8h_05 4615:::PA_50uM.AA_30uM_30min_01 4615:::Rv_OA30_30mim_01 4615:::Rv.MT106_100503_02 4615:::Rv.MT96_100603_01 4615:::Rv3524.1_OA_10min 4615:::Starvation_1254_12h_02 4615:::Starvation_1254_24h_03 4615:::Starvation_1254_24h_05 4615:::Starvation_1254_OA50_12h_01 4615:::Starvation_1254_OA50_5d_01 4615:::Starvation_1254_OA50_5d_02 4615:::Starvation_OA50_24h_02 4615:::Starvation_T0 4615:::TBD625 4615:::TBD664 4615:::TBE057 4615:::Test.G.OA 4615:::WM_1254.whiB4._10d_01 4615:::WM_1254.whiB4._14d_02 4615:::X2.2..Dipyridyl_0.2mM.Dpd.AA_50uM_01 4615:::X2.BA.1 4615:::X2.BA.OA.1 4615:::X7H9_MTB1254_OA100_10M_01 4615:::X7h9.control.4h 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.4hr.rep.2 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.1 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.3 4696:::H37Rv.wt.vs.dosT.null.nitric.oxide.treatment.1hr.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.3 4703:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4731:::X10ug.ml.Ethambutol.vs.DMSO.12hrs.3 4731:::X5ug.ml.Rifampicin.vs.DMSO.2.5hrs 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.3 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.5 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.2 4735:::H37Rv.dosR.KO.vs.BCG.with.pMFdosR.at.OD.0.4.rep.2 4735:::H37Rv.dosR.KO.vs.BCG.with.pMFdosR.at.OD.0.4.rep.3 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.24.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.24.hr.rep.2 4802:::H37Rv.ctrl.vs.relE3.overexpression.6.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.6.hr.rep.2 4802:::H37Rv.ctrl.vs.relE3.overexpression.6.hr.rep.4 4815:::H37Rv.reaeration.for.12hrs.rep.3 4815:::H37Rv.reaeration.for.24hrs.rep.5 4815:::H37Rv.reaeration.for.4hrs.rep.2 4860:::M..bovis.nadABC.null.nicotinamide.starvation.rep.1 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.1 Milano_Tuberculosis2009:::H37Rv.wild.type.vs.H37Rv.Bif1.mutant.rep.1 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.1 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.rep.1 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2 Raghavan_Nature2008:::espR.mutant..R...rep2 Rohde_CellHostMicrobe2007:::CDC1551.ctrl..vs.24.hr.after.macrophage.infection Rohde_CellHostMicrobe2007:::CDC1551.ctrl.vs.pH.5.5.7H9.broth.for.2.hr Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.24hrs
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RV1473 -0.355981234168203 -0.468396360747636 0.318509525308392 -0.318509525308392 0.468396360747636 0.0187358544299054 1.225 0.625 -0.825 -0.175 0.0750000000000001 0.525 -0.0749999999999999 -2.025 0.975 -3.1101518353643 NA NA 1.86609110121858 2.02347227842979 0 -0.652007734160709 -2.36071765816808 -0.427177481001844 0.876837987319574 0.0674490759476595 0.112415126579433 -0.8 -0.1 0.05 -3.13439823521477 -0.357083343252315 0.31740741622428 -0.436435197308385 -0.15870370811214 0 0 NA 0.573317145555106 -0.843113449345744 -1.34898151895319 NA -1.11290975313638 0 0.505868069607447 0.539592607581276 0.539592607581276 0.385423291129483 0.0642372151882471 -2.44101417715339 0.224830253158865 -0.89932101263546 0.44966050631773 -0.224830253158865 0.192711645564741 1.05991405060608 1.12415126579433 -1.05991405060608 0.931439620229584 0.867202405041337 -3.53304683535359 -0.995676835417831 -0.353304683535359 0.60423130536445 1.50355231799991 0.44966050631773 NA -0.730698322766312 1.3068258464859 -1.44364688870429 -1.75130934039537 0.89932101263546 0.698157101914371 -1.23064980676431 0.295829280472191 0.0170757154297872 -1.29775437266383 -0.25 -0.224830253158865 -0.937706665613803 2.40184514350202 -0.674490759476595 1.34898151895319 NA 0.0249811392398739 0.249999999999999 -0.118331712188876 NA -1.28766417718259 -1.02487556959431 -0.236509746829455 0.797125443017794 -1.23510645566493 0.709529240488366 -0.254028987335341 0.692009999982481 -0.81464468352368 -0.693226613906501 0.768170031626122 0.337245379738298 0.861849303775649 NA NA NA NA NA NA -0.355981234168203 NA NA NA -0.355981234168203 NA 1.55507591768215 2.30451009487837 0.936792721495271 NA -0.430924651887825 0.20609439872896 1.51760420882234 0.543339778467257 1.386453227813 -1.68622689869149 1.386453227813 -0.318509525308392 NA -0.580811487327068 -0.168622689869149 NA 1.55507591768215 1.57381177211206 NA 0.430924651887825 0.524603924037352 0.993000284784987 2.4356610758877 NA 1.10541541136442 -0.693226613906501 1.57381177211206 -0.131150981009338 -0.44966050631773 0.843113449345744 -4.72143531633617 NA -3.1101518353643 -3.69096332269137 -1.85484958856064 -3.03520841764468 1.98600056956997 1.01173613921489 -1.53634006325224 -0.637019050616784 -0.65575490504669 1.76117031641111 -0.0187358544299054 0.805641740485933 1.0492078480747 -1.12415126579433 -1.33024566452328 0.24356610758877 1.91105715185035 -0.788365822764851 -0.0087596202529428 -0.727048480994252 0.665731139223652 -1.01173613921489 -0.177497568283315 1.01786787339195 -1.23861030376611 -1.16502949364139 0.257532835436518 -1.78999470784173 1.27115566209051 0.518839045751227 -1.50463323267856 -0.542001503150835 0.0602223892389817 0.927424794280318 0.590179414542021 0.126467017401862 -0.75880210441117 -1.3068258464859 -0.891291360736929 0.674490759476595 0.578134936694224 1.9242824608597 -0.0991898175700875 -0.7935185405607 -0.853032431102753 NA -1.17043984732703 2.23646936036976 -3.88128015979514 -0.0709990273133256 NA 0.149421821117344 -0.842688707633494 -0.0834886588422269 0.0834886588422267 -0.58245113222174 -0.505 0.974556440004689 -2.95613392223503 0
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RV3906C -0.800957776878457 1.34898151895319 1.01173613921489 -1.18035882908404 0.632335087009308 -1.6440712262242 0.806456342852451 0.806456342852451 -0.513199490906105 -1.12903887999343 -1.15836456518807 0.835782028047085 0.131965583375856 -0.659827916879278 0.190616953765125 NA -0.4 -1.65 0.212997081939977 1.56197860089317 -0.887487841416573 -0.674490759476595 0.177497568283314 -1.63297762820649 0.319495622909966 -0.567992218506606 0.425994163879955 -0.1 -0.1 NA -2.858556075877 -1.95923506324154 0.289067468347112 1.05991405060608 -0.321186075941236 -1.60593037970618 -1.73440481008267 0 NA NA NA NA NA NA NA NA NA 1.02779544301195 0.128474430376494 -3.11550493662999 -0.289067468347112 -0.0321186075941236 0.963558227823707 -2.98703050625349 0.289067468347112 2.69796303790638 2.34465835437102 -1.67016759489443 0.80296518985309 1.02779544301195 -3.30821658219473 NA NA 1.2917134356014 0.846295009531954 1.2917134356014 0.0190893611172621 -0.859021250276796 0.871747491021637 0 -0.343608500110718 0.929015574373424 1.39988648193256 -0.878110611394058 1.15808790778057 1.05 -0.95 NA -0.595138905420525 0 1.15626987338845 -0.706609367070719 0.770846582258966 1.05991405060608 0.508632375998744 1.06931461868241 NA NA NA NA NA NA NA NA NA NA NA -0.544780998038788 -0.0259419522875613 0.285361475163175 0.18159366601293 0.363187332025859 NA -1.1414459006527 -1.76405275555417 -1.478691280391 -0.492897093463666 -0.0778258568626841 -0.648548807189034 -1.45274932810344 NA -0.856084425489525 NA 1.32303956666563 1.08956199607758 0.985794186927331 0.207535618300491 -0.674490759476595 0.285361475163175 2.80173084705663 0.985794186927331 1.68622689869149 -1.73811080326661 0.648548807189034 -0.57072295032635 1.06362004379002 NA -0.311303427450736 0.492897093463666 1.478691280391 0.907968330064647 2.56825327646857 0.0259419522875614 1.1414459006527 0.648548807189034 3.06115036993224 NA 0.95985223463977 -0.0778258568626841 1.24521370980294 -0.518839045751227 -0.544780998038788 1.06362004379002 NA -3.24274403594517 -2.69796303790638 -3.70969917712127 -2.56825327646857 -1.99753032614222 1.66028494640393 1.24521370980294 -0.38912928431342 -0.830142473201963 -0.337245379738298 1.16738785294026 0.752316616339279 0.95985223463977 1.45274932810344 -1.78999470784173 -1.45274932810344 0.207535618300491 0.38912928431342 -0.16280811435642 NA -0.511682645120176 0.0232583020509171 -1.33521640141285 -0.0137651175403387 1.24167617085464 -0.659161424033945 -0.0153293354426499 0.168622689869149 -1.56359221515029 0.551856075935396 1.62490955692089 -0.674490759476595 -1.13820315661675 0 0.337245379738298 0.75880210441117 -0.75880210441117 1.68622689869149 -0.0421556724672872 NA 0.674490759476595 0.674490759476595 0.971723975517128 -0.560170291768698 -0.994588069058708 -1.13177263030818 -0.697354853018175 -1.29182128509924 1.3163448693011 -1.03349390564962 -0.467791978346671 -4.70002291127342 1.12870421548032 0.0995725700000001 NA NA NA -0.696867230170132 2.00657821954712 -0.878491061898415 0
[+] Show/hide bicluster #74 motif PSSM #1. bicluster 74 motif PSSM #1 Mycobacterium tuberculosis H37Rv 15x4
POSITION A C G T
1 0 1 0 0
2 0 0 0.5 0.5
3 0.75 0 0.25 0
4 0 1 0 0
5 0 1 0 0
6 1 0 0 0
7 0 0 0.25 0.75
8 0 0.75 0.25 0
9 0 0 1 0
10 0.5 0.25 0 0.25
11 0 0 0.5 0.5
12 0 1 0 0
13 0 0 1 0
14 0.75 0 0 0.25
15 1 0 0 0 [+] Show/hide bicluster #74 motif PSSM #2. bicluster 74 motif PSSM #2 Mycobacterium tuberculosis H37Rv 23x4
POSITION A C G T
1 1 0 0 0
2 0 0.5 0.5 0
3 0.5 0.25 0.25 0
4 0 1 0 0
5 0 0.25 0.75 0
6 0.25 0 0.25 0.5
7 1 0 0 0
8 1 0 0 0
9 0 1 0 0
10 0.5 0.25 0.25 0
11 0 0 1 0
12 0 1 0 0
13 0 0 0.5 0.5
14 0 0.5 0.5 0
15 0.25 0.25 0.25 0.25
16 0.25 0.5 0.25 0
17 0.5 0.25 0 0.25
18 0.75 0 0.25 0
19 0.5 0 0.5 0
20 0.75 0 0 0.25
21 0 1 0 0
22 0.75 0.25 0 0
23 1 0 0 0 |