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[+] Show/hide bicluster #83 rows and columns.
bicluster 83
Mycobacterium tuberculosis H37Rv
16x237
[+] Show/hide bicluster #83 rows (genes).
bicluster 83 genes
Mycobacterium tuberculosis H37Rv
16
[+] Show/hide bicluster #83 rows (short gene names).
bicluster 83 short names
Mycobacterium tuberculosis H37Rv
16
short_name
[+] Show/hide bicluster #83 rows (long gene names).
bicluster 83 long names
Mycobacterium tuberculosis H37Rv
16
long_name
[+] Show/hide bicluster #83 rows (NCBI RefSeq gene IDs).
bicluster 83 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
28
[+] Show/hide bicluster #83 gene upstream sequences.
bicluster 83 upstream sequences
Mycobacterium tuberculosis H37Rv
16
upstream
[+] Show/hide bicluster #83 columns (arrays; conditions).
bicluster 83 arrays
Mycobacterium tuberculosis H37Rv
237
[+] Show/hide bicluster #83 ratios.
bicluster 83 ratios
Mycobacterium tuberculosis H37Rv
16x237
GENES 2867:::H37Ra..Dubos.media.replicate.3 2867:::H37Ra..Youman.media.replicate.4 2885:::H37Ra..7H9.roll.replicate.3 2885:::Strain.1843..replicate.4 2885:::Strain.3160...replicate.3 2885:::Strain.CDC1551..replicate.1 2885:::Strain.M3061a..replicate.1 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.5 4060:::H37Rv.wild.type.Vs.H37Rv.sigE.null.mutant.rep.1 4060:::H37Rv.wild.type.Vs.H37Rv.sigE.null.mutant.rep.3 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.1 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.01.mM.DETA.NO.rep.2 4082:::H37Rv.wild.type.Vs.Rv3676.null.5 4082:::H37Rv.wild.type.Vs.Rv3676.null.6 4082:::Rv3676.null.Vs.H37Rv.wild.type.5 4082:::Rv3676.null.Vs.H37Rv.wild.type.6 4084:::High.iron.wt.vs.low.iron.wt.1a 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.4 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.2 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.5 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.vs..MTB1254.rep1 4089:::MTB1254.vs..MTB1254.rep2 4089:::MTB1254.vs..MTB1254.rep4 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.5 4099:::H37Rv.hypoxia.2hr.rep.3 4099:::H37Rv.hypoxia.2hr.rep.6 4100:::H37Rv.0.2..Oxygen..2h..2 4100:::H37Rv.0.2..Oxygen..2h..5 4101:::H37Rv.Day.0.rep.2 4101:::H37Rv.Day.0.rep.3 4101:::H37Rv.Day24.1 4101:::H37Rv.Day6.2 4101:::NRP.Day10..1 4101:::NRP.Day14..1 4101:::NRP.Day14..2 4101:::NRP.Day14..7 4101:::NRP.Day20..1 4101:::NRP.Day20..2 4107:::Dubos.NRP.1vsDubos.log.phase 4107:::PBS.Tw.DMSOvs7H9..6h 4107:::pH4.8vspH6.8..7h. 4107:::pH5.2vspH6.8..5h. 4107:::pH5.6vspH6.8..4h. 4107:::pH5.6vspH6.8..7h. 4107:::UV.40J.vs.8h.2 4107:::UV.60J.vs.ctrl.6h.1 4107:::WT.t.6h.WT.t.0h..2 4107:::X0.05mM.Palmitate.10mM.Gluc..1 4107:::X0.12mg.mL.PZAvspH5.6..11h. 4107:::X0.1mg.mLTriclosanvsEtOH.6hC 4107:::X0.1mMGSNO.10ug.mLmdvsDMSO.6hA 4107:::X0.2mg.mL.AmpvsEtOH..6hB 4107:::X0.2mg.mL.TLMvsEtOH..6h 4107:::X0.4mM.NaN3vsDMSO..4h 4107:::X1.2mg.mL.NamvspH5.6..10.5h. 4107:::X1.2mg.mL.PZAvspH5.6..6h. 4107:::X1.ug.mL..111891vsDMSO..6h 4107:::X150uM.Deferroxaminevsctrl..6hA 4107:::X1ug.mL..111891vsDMSO..6h 4107:::X1ug.mL..59vsDMSO..6hA 4107:::X200uM.Dipyridylvsctrl..6h 4107:::X200uM.Dipyridylvsctrl..6hA 4107:::X20ug.mL.Procept.6776vsDMSO..6h 4107:::X20ug.mLProcept6778vsDMSO.6h 4107:::X25J.UV.ctrl..2h. 4107:::X2ug.mL..111895vsDMSO..6h 4107:::X2ug.mL..111895vsDMSO..6hA 4107:::X40ug.mL.5CL.pH5.6..2h..2 4107:::X4d.Dubos.NRP.1vsDubos.aero.A 4107:::X5ug.mLStreptomycinvsEtOH.6hA 4107:::X9ug.mLAscidideminNpvsDMSO.6h 4107:::X9ug.mLNaturalproductvsDMSO.6h 4363:::H37Rv.hypoxia.1.day.rep.10 4363:::H37Rv.hypoxia.1.day.rep.2 4363:::H37Rv.hypoxia.1.day.rep.3 4363:::H37Rv.hypoxia.1.day.rep.4 4363:::H37Rv.hypoxia.1.day.rep.5 4363:::H37Rv.hypoxia.1.day.rep.6 4363:::H37Rv.hypoxia.1.day.rep.7 4363:::H37Rv.hypoxia.1.day.rep.9 4363:::H37Rv.hypoxia.12hr.rep.1 4363:::H37Rv.hypoxia.12hr.rep.2 4363:::H37Rv.hypoxia.12hr.rep.3 4363:::H37Rv.hypoxia.4.day.rep.1 4363:::H37Rv.hypoxia.4.day.rep.2 4363:::H37Rv.hypoxia.4.day.rep.3 4363:::H37Rv.hypoxia.4.day.rep.4 4363:::H37Rv.hypoxia.4.day.rep.5 4363:::H37Rv.hypoxia.4.day.rep.6 4363:::H37Rv.hypoxia.4hr.rep.4 4363:::H37Rv.hypoxia.4hr.rep.5 4363:::H37Rv.hypoxia.4hr.rep.7 4363:::H37Rv.hypoxia.7.day.rep.3 4363:::H37Rv.hypoxia.7.day.rep.4 4363:::H37Rv.hypoxia.7.day.rep.5 4363:::H37Rv.hypoxia.7.day.rep.6 4363:::H37Rv.hypoxia.7.day.rep.7 4363:::H37Rv.hypoxia.8hr.rep.1 4363:::H37Rv.hypoxia.8hr.rep.3 4364:::H37dosR.mutant.hypoxia.1.day.rep.1 4364:::H37dosR.mutant.hypoxia.1.day.rep.2 4364:::H37dosR.mutant.hypoxia.1.day.rep.3 4364:::H37dosR.mutant.hypoxia.1.day.rep.5 4364:::H37dosR.mutant.hypoxia.12hr.rep.1 4364:::H37dosR.mutant.hypoxia.12hr.rep.3 4364:::H37dosR.mutant.hypoxia.12hr.rep.4 4364:::H37dosR.mutant.hypoxia.4hr.rep.1 4364:::H37dosR.mutant.hypoxia.7.day.rep.1 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.5.3 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.6 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.3 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.6 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.4 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.1 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.2 4575:::Whole.Lung.Surfactant.30min.rep.2 4583:::X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.3 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages.rep.1 4615:::AA_10uM_10.min_01 4615:::AA_10uM_10min_01 4615:::AA_30uM_24h_03 4615:::AA_30uM_2h_04 4615:::AA_30uM_4h_01 4615:::AA_30uM_4h_09 4615:::AA_60uM_24h_02 4615:::Acetate.3mM.10m_04 4615:::Acetate.3mM.10m.02 4615:::Acetate.3mM.10m.03 4615:::Acetate.3mM.10m.06 4615:::Acetate.3mM.30m.03 4615:::Acetate.3mM.30m.07 4615:::Acetate.3mM.60m.01 4615:::CK_LA_2h.3 4615:::CK.AA.2h 4615:::CK.AA.Na.2h 4615:::CK.AA0.03.2h.02 4615:::CK.for.AA.Na.4h.2 4615:::ETYA_10uM_1h_02 4615:::Glucose_20mM_1h.OA_50uM_10min 4615:::L2A_30uM_10min_02 4615:::LAA_50uM_10min_01 4615:::MDGCy3.7H9Cy5.03 4615:::MTB1254_Bottom_14D_02 4615:::MTB1254_Pellicle_14D_03 4615:::MTB1254vsMTB1254.0494.4. 4615:::MTB6548_PA50_1h_01 4615:::OA_50uM_4h_05 4615:::PA_50uM_10min_07 4615:::PA_50uM_24h_02 4615:::PA_50uM.AA_30uM_2h_02 4615:::PA_50uM.OA_10uM_2h_02 4615:::PA_50uM.OA_10uM_4h_01 4615:::Rv.3524.1._01 4615:::Rv.MT106_100603_01 4615:::Rv.MT71_100803_01 4615:::Rv.MT90_100503_01 4615:::Rv.p0485.1._300uM.PA_10m 4615:::Rv.pMV0481.2. 4615:::Rv.pMV261Km._300uM.PA_10m 4615:::Starvation_1254_OA50_12h_04 4615:::Starvation_1254_OA50_6h_03 4615:::Starvation_1254_OA50_6h_04 4615:::Starvation_1254_PA50_24h_02 4615:::Strain95.OA.10M.01 4615:::TBD040 4615:::TBD625 4615:::TBD819 4615:::Test.4 4615:::WT_65.4_SDS_01 4615:::WT_65.4_SDS_02 4615:::WT_85.1_PA_10min_01 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.4hr.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.3 4703:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.3 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.4 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.4 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.1 4802:::H37Rv.ctrl.vs.relE1.overexpression.6.hr.rep.1 4815:::H37Rv.reaeration.for.1hrs.rep.4 4815:::H37Rv.reaeration.for.24hrs.rep.1 4815:::H37Rv.reaeration.for.24hrs.rep.6 4815:::H37Rv.reaeration.for.4hrs.rep.2 4815:::H37Rv.reaeration.for.4hrs.rep.3 4815:::H37Rv.reaeration.for.4hrs.rep.5 4815:::H37Rv.reaeration.for.6hrs.rep.5 4860:::CDC1551.nadABC.null.nicotinamide.starvation.rep.2 4928:::Mtb.Erdman.strain.200.ppm.CO.rep.2 4928:::Mtb.Erdman.strain.2000.ppm.CO.rep.2 Rohde_CellHostMicrobe2007:::CDC1551.in.ctrl.vs.100.nM.Concanamycin.A.treated.macrophages.for.2.hr
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RV3604C -0.502802202518916 -0.699017696184835 -0.593551868339404 -1.02522595440442 -1.21408336705787 0.377714825306893 0.539592607581276 -1.73947616917648 0.816488814103247 1.31348200529653 0.337245379738298 0.299773670878487 0.187358544299054 -1.49886835439243 -1.23656639237376 -0.44966050631773 0.112415126579433 0.379401052205585 -2.65580736543909 -0.379401052205585 2.65580736543909 -0.35 0.505868069607446 -0.590179414542021 0.252934034803723 -0.927424794280318 -0.252934034803723 -0.210778362336436 -1.81269391609335 -1.26467017401862 -1.9813166059625 0.168622689869149 0.590179414542021 1.43329286388776 -0.0421556724672871 0.843113449345744 0.716646431943882 -0.632335087009308 2.36071765816808 0.885269121813031 0.0843113449345745 0.505868069607446 1.6440712262242 -0.716646431943882 -1.89700526102792 -1.09604748414947 -1.51760420882234 -1.3068258464859 -0.252934034803723 0.548023742074734 -1.22251450155133 -0.463712397140159 0.0421556724672872 2.06562795089707 2.14993929583165 2.10778362336436 -0.168622689869149 0.0843113449345745 0.23185619857008 -0.105389181168218 -0.569101578308377 NA NA 0.795553203485215 -0.588017585184724 -1.10685663093595 1.62569567668718 0.242124888017239 -1.27980297951969 -0.415071236600982 -0.242124888017239 -0.89932101263546 -0.933910282352209 -1.18380010846913 0.302832585887451 1.37651175403387 -0.302832585887451 -0.550604701613547 1.23886057863048 0.550604701613547 1.01861869798506 -0.440483761290838 -1.2113303435498 1.32145128387251 0.357893056048806 -1.2113303435498 0.357893056048806 -0.0275302350806774 NA 0.605665171774902 1.2113303435498 0.165181410484064 0.495544231452192 1.07367916814642 0.495544231452192 -1.67934433992132 -0.0550604701613547 0.440483761290838 0.330362820968128 0.110120940322709 -1.706874575002 -1.4591024592759 1.84452575040538 -1.43157222419522 -0.0275302350806774 -2.3125397467769 -0.660725641936256 0.911000506306051 0.639452278464824 0.766466772132494 -0.0262788607588284 -0.950418797444293 -1.20882759490611 -0.674490759476595 0.525577215176568 0.65697151897071 0.889101455673694 0.766466772132494 0.608793607579524 -0.332865569611826 -1.29204398730906 -0.670110949350124 -0.670110949350124 -0.840923544282508 -0.210230886070627 0 0.477399303785382 0.81464468352368 -0.810264873397209 -0.919760126558993 -0.709529240488366 -0.762086962006023 0.56499550631481 NA -3.36253481562597 -2.9459375818316 -2.53925932979424 0.912546321644805 -0.0297569452710263 0.63481483244856 0.654652795962578 0.981979193943867 -2.56901627506527 0.75 -0.611257250775665 0.379401052205585 -0.168622689869149 0.0381787222345243 -0.292703537131353 -0.318156018621035 -0.241798574151987 0.929015574373424 0.292703537131353 -0.262301962018676 -0.306586708852998 0.832350298928564 -0.0287017344458126 0.860557175883932 0.488424343069259 0.0465166041018341 0.55819924922201 NA 0.302357926661922 1.53504793536053 1.41875642510594 0.976848686138517 1.06988189434219 1.55830623741144 0.465166041018341 0.0465166041018341 0.325616228712839 NA 1.79088925792061 1.27920661280044 1.23269000869861 0.418649436916507 -0.302357926661922 0.465166041018341 -0.39539113486559 0.0232583020509171 0.511682645120176 -1.39549812305502 0.39539113486559 0.255841322560088 0.302357926661922 -0.279099624611005 1.20943170664769 NA -0.209324718458254 0.16280811435642 0.325616228712839 0.674490759476595 0.302357926661922 0.976848686138517 0.9535903840876 1.16291510254585 0.860557175883932 1.13965680049494 -1.83740586202245 -0.930332082036683 -2.0467305804807 -2.11650548663345 1.34898151895319 1.11639849844402 -0.883815477934849 0.837298873833015 1.18617340459677 0.511682645120176 0.604715853323844 0.348874530763756 -0.815663244018208 0.786905886056028 -1.17232917718551 0.594194240491286 1.61128348097187 -0.412188797457919 -0.298332451306956 0.817171497058183 0.998765163071112 0.0389129284313421 0.45 -0.15 -0.2 0.610487986679546 1.56560628842013 0.198379635140175 -0.143073797464732 0.725588544285428 -0.470099620241263 -0.429221392394197 -0.99129702529136 0.347464936700064 1.42051841768556 0.374717088598108 -2.27444558428154 0.549004106550717 0.177698698672304
[+] Show/hide bicluster #83 motif PSSM #1. bicluster 83 motif PSSM #1 Mycobacterium tuberculosis H37Rv 24x4
POSITION A C G T
1 1 0 0 0
2 0 1 0 0
3 1 0 0 0
4 0 0 1 0
5 0 0 1 0
6 0 0 1 0
7 0 1 0 0
8 0 0 1 0
9 0 1 0 0
10 0 1 0 0
11 0 0 1 0
12 0 0 0 1
13 0 0 0 1
14 1 0 0 0
15 0 1 0 0
16 1 0 0 0
17 0 1 0 0
18 1 0 0 0
19 1 0 0 0
20 0 0 1 0
21 0 0 0 1
22 1 0 0 0
23 0 0 1 0
24 0 0 0 1 [+] Show/hide bicluster #83 motif PSSM #2. bicluster 83 motif PSSM #2 Mycobacterium tuberculosis H37Rv 19x4
POSITION A C G T
1 0 0 0 1
2 0 0 1 0
3 0 0 0 1
4 0 0 0 1
5 0.333333 0 0 0.666667
6 0 0 1 0
7 0.666667 0.333333 0 0
8 0 0 0.666667 0.333333
9 0 0 0 1
10 0 1 0 0
11 0 0 0.333333 0.666667
12 0 0.333333 0.666667 0
13 0 0.333333 0.666667 0
14 0 1 0 0
15 1 0 0 0
16 0 1 0 0
17 0 0 1 0
18 0 1 0 0
19 0 1 0 0 |