Bicluster 84 (zzz

GENES 2885:::Strain.9800608..replicate.2 2885:::Strain.9800608..replicate.4 2885:::Strain.M3061a..replicate.4 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.4 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.5 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.4 4062:::MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.2 4082:::H37Rv.wild.type.Vs.Rv3676.null.1 4082:::H37Rv.wild.type.Vs.Rv3676.null.4 4082:::H37Rv.wild.type.Vs.Rv3676.null.5 4082:::Rv3676.null.Vs.H37Rv.wild.type.1 4082:::Rv3676.null.Vs.H37Rv.wild.type.4 4082:::Rv3676.null.Vs.H37Rv.wild.type.5 4089:::H37Rv.whiB7.null.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.4 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.1 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.5 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.1 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.2 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.6 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.2 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.5 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.2 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.3 4089:::MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.1 4089:::MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.control.vs..5.0.ug.ml.Streptomycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.vs..MTB1254.rep1 4089:::MTB1254.vs..MTB1254.rep2 4089:::MTB1254.vs..MTB1254.rep4 4089:::MTB1254.vs..MTB1254.rep5 4099:::H37Rv.hypoxia.2hr.rep.1 4100:::H37Rv.0.2..Oxygen..2h..1 4101:::H37Rv.Day.0.rep.3 4101:::H37Rv.Day14.1 4101:::H37Rv.Day14.3 4101:::H37Rv.Day8.3 4101:::NRP.Day10..1 4101:::NRP.Day10..3 4101:::NRP.Day12..2 4101:::NRP.Day6..2 4101:::NRP.Day8..2 4101:::NRP.Day8..3 4107:::DIPED.5ug.mL.vs.DMSO.12h.2 4107:::Dubos.NRP.1vsDubos.log.phase 4107:::EMB.10ug.mL.vs.DMSO.12h.1 4107:::PBS.Tw.DMSOvs7H9..6h 4107:::pH4.8vspH6.8..7h. 4107:::pH5.2vspH6.8..5.5h. 4107:::Rif.0.5ug.mL.vsDMSO.2.5h 4107:::Rif.0.5ug.mL.vsDMSO.2.5hA 4107:::WT.t.6h.WT.t.0h..2 4107:::X0.12mg.mL.BZA.pH5.6..2h. 4107:::X0.12mg.mL.PZA.pH5.6..2h. 4107:::X0.12mg.mL.PZA.pH5.6..4h..1 4107:::X0.13mg.mL.TLMvsDMSO..6hA 4107:::X0.1ug.mL.Mtmvsctrl..0.75h. 4107:::X0.2mg.mL.AmpvsEtOH..6hA 4107:::X0.2ug.mL.Mtm.ctrl..4h...2 4107:::X0.2ug.mL.Mtmvsctrl..2h. 4107:::X0.2ug.mL.Mtmvsctrl..4h. 4107:::X0.2ug.mL.Mtmvsctrl..4h.A 4107:::X0.32ug.mL.CervsEtOH..6h 4107:::X0.32ug.mL.CervsEtOH..6hA 4107:::X0.5ug.mL..111891vsDMSO.6h 4107:::X0.5ug.mL..124196vsDMSO..6hA 4107:::X0.5ug.mL.CeruleninvsDMSO..6hB 4107:::X0.5ug.mL.CeruleninvsDMSO..6hC 4107:::X0.5ug.mL.CervsEtOH..6hA 4107:::X1.2mg.mL.NamvspH5.6..10.5h. 4107:::X1.2mg.mL.NamvspH5.6..5h. 4107:::X1.2mg.mL.PZAvspH5.6..7h. 4107:::X10ug.mL.clotrimvsEtOH..6h 4107:::X10ug.mL.EMBvsDMSO..6hA 4107:::X10ug.mL.methoxatinvsDMSO..6h.A 4107:::X10ug.mL.RoxvsEtOH..6h 4107:::X10ug.mL.RoxvsEtOH..6hA 4107:::X10ug.mL.TriclosanvsDMSO..6hA 4107:::X10ug.mL.TriclosanvsDMSO..6hC 4107:::X10ug.mLchlorpromazinevsctrl.6h 4107:::X1mM.DNP.DMSO..6h..1 4107:::X1mM.DNP.DMSO..6h..2 4107:::X2.5mM.Dinitrophenol.DMSO..6h 4107:::X20uM.DCCD.DMSO..6h..2 4107:::X24ug.mL.cltrmazole.DMS..6h..2 4107:::X2ug.mL.SMvsEtOH..6h 4107:::X30ug.mL.RoxvsEtOH..6h 4107:::X40mJ.UV.ctrl..6h. 4107:::X40ug.mL.5CL.pH5.6..4h..3 4107:::X50ug.mL.Thioridazine.DMSO..6h 4107:::X5ug.mL.OfloxvsEtOH..6hA 4107:::X7d.Dubos.NRP.1vsDubos.log.phase 4363:::H37Rv.hypoxia.1.day.rep.5 4363:::H37Rv.hypoxia.12hr.rep.1 4363:::H37Rv.hypoxia.7.day.rep.5 4363:::H37Rv.hypoxia.7.day.rep.7 4364:::H37dosR.mutant.hypoxia.4hr.rep.1 4364:::H37dosR.mutant.hypoxia.4hr.rep.4 4396:::H37Rv.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4396:::Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4396:::Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2 4575:::Extracted.Lung.Surfactant.30min.rep.3 4575:::Purified.Surfactant.Lipids.30min.rep.1 4575:::Whole.Lung.Surfactant.2hrs.rep.3 4575:::Whole.Lung.Surfactant.30min.rep.4 4583:::X0.5ug.mL.Cerulenin.vs.DMSO..6hrs.rep.3 4583:::X0.5ug.mL.Cerulenin.vs.Ethanol..6hrs.rep.2 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media.rep.1 4615:::AA_30uM_1h_06 4615:::AA_30uM_2h_08 4615:::AA_3uM_2h_T0_01 4615:::AA_60uM_2h_T0_01 4615:::Acetate.3mM.60m.03 4615:::C2_ceramide_25uM_1h_01 4615:::CHP_25uM_24h_01 4615:::CHP.AA.24h.1 4615:::CK_OA_NA_0.05_2h 4615:::CK_OA_NA_2h.02 4615:::CK.AA.Na.2h 4615:::CK.PA.Na.2h.01 4615:::ETYA_30uM_10min.01 4615:::ETYA_30uM_10min.05 4615:::L2A_30uM_10min_05 4615:::L2A_30uM_1h_01 4615:::MDA_1254.pMV261.3524_04 4615:::MTB1254_Bottom_10D_03 4615:::MTB1254_Bottom_10D_04 4615:::MTB1254_Bottom_14D_01 4615:::MTB1254_Bottom_14D_04 4615:::MTB1254_Bottom_21D_04 4615:::MTB1254_Pellicle_10D_01 4615:::MTB1254_Pellicle_10D_02 4615:::MTB1254_Pellicle_14D_03 4615:::MTB1254_Pellicle_21D_04 4615:::MTB1254_Pellicle_56D_01 4615:::MTB1254.0485.1._PA_4h_01 4615:::MTB1254.3524.1._PA_12h_06 4615:::MTB1254.B4.1._OA_30MIN_01 4615:::MTB1254.B4.1.Compl._OA_30MIN_01 4615:::MTB1254.B4.1.Compl._OA_30MIN_03 4615:::MTB1254.B4.1.Compl._PA_4h_01 4615:::MTB1254TA1_OA.30min_04 4615:::OA_50uM_1h_05 4615:::OA_50uM_4h_05 4615:::OA_50uM_4h_08 4615:::PA_5.uM_10min_02 4615:::PA_50uM_1h_02 4615:::PA_50uM_1h_09 4615:::PA_50uM_24h.PA_100uM_1h_01 4615:::PA_50uM.OA_10uM_4h_03 4615:::Rv_Rv3524.1_OA_10min 4615:::Rv.3524.1._01 4615:::Rv3524.1_OA_10min 4615:::Starvation_1254_24h_01 4615:::Starvation_1254_3d_02 4615:::Starvation_1254_5d_01 4615:::Starvation_1254_5d_02 4615:::Starvation_1254_5d_03 4615:::Starvation_1254_5d_04 4615:::Starvation_1254_6h_06 4615:::Starvation_1254_6h_07 4615:::Starvation_1254_6h_08 4615:::Starvation_1254_OA50_24h_03 4615:::Starvation_OA50_24h_02 4615:::TBE055 4615:::TBE733 4615:::Test.3 4615:::X7H9_MTB1254.3524.1._OA100_10M_01 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.3 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2 4703:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::H37Rv.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2 4731:::X10ug.ml.Ethambutol.vs.DMSO.12hrs.3 4731:::X5ug.ml.Capreomycin.vs.Ethanol.6hrs.A 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.1 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.1 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.5 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.2 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.1 4799:::H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1 4815:::H37Rv.reaeration.for.1hrs.rep.2 4815:::H37Rv.reaeration.for.24hrs.rep.1 Raghavan_Nature2008:::espR.mutant.complemented.with.N.terminal.Flag.espR..RFL..rep1 Raghavan_Nature2008:::espR.mutant.complemented.with.WT.espR..R...rep2 Rohde_CellHostMicrobe2007:::CDC1551.5.uM.cytochalasin.D.treatment.for.2hr.in.macrophages.vs.outside.macrophages Rohde_CellHostMicrobe2007:::M..bovis.ctrl..vs.2.hr.after.macrophage.infection Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.4hrs RV0133 -0.850444870644403 NA 0.527862333503422 1.23656639237376 1.93916093349521 -2.36071765816808 0.0293256851946346 NA NA NA NA NA NA -0.0439885277919519 -0.571850861295374 -0.689153602073913 -0.337245379738298 -0.102639898181221 -0.571850861295374 -1.48094710232905 -1.45162141713441 -0.16129126857049 -1.36364436155051 -1.51027278752368 -1.53959847271831 -1.04106182440953 -0.923759083630989 -0.806456342852451 -0.54252517610074 -0.894433398436354 -0.601176546490009 -1.80352963947003 0.0733142129865864 0.54252517610074 0.425222435322201 -0.102639898181221 -0.0146628425973173 1.07038750960416 -0.0733142129865865 -0.806456342852451 0.454548120516836 0.659827916879278 1.12903887999343 1.07038750960416 1.80352963947003 0.219942638959759 0.337245379738298 0.54252517610074 0.0146628425973173 1.36364436155051 -1.21701593557733 0.86510771324172 0.337245379738298 0.659827916879278 1.1876902503827 0.747804972463182 1.01173613921489 1.33431867635587 0.0146628425973173 0.337245379738298 1.39297004674514 0.16129126857049 1.56892415791295 0.747804972463182 0.894433398436354 0.366571064932932 0.249268324154394 -1.07038750960416 -0.659827916879278 -1.01173613921489 -0.225 0 1.52994245442252 -0.180960935469331 -0.740294736010897 -0.542882806407991 -0.444176841606538 -0.674490759476595 1.03641263041526 0.115156958935028 0.674490759476595 1.13511859521671 -1.44890607591269 NA 0.0999245569594956 -2.59803848094689 -0.499622784797478 -0.724453037956343 -0.374717088598108 -0.424679367077856 NA -0.149886835439243 -0.974264430355082 -0.174867974679117 -0.549585063277226 -0.324754810118361 -0.749434177196217 2.14837797462916 0.424679367077856 1.59879291135193 0.224830253158865 0.924302151875334 1.07418898731458 0.12490569619937 0.524603924037352 0.699471898716469 1.02422670883483 1.0492078480747 -1.94852886071016 -1.19909468351395 -0.324754810118361 0.44966050631773 -0.44966050631773 NA 1.34898151895319 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