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[+] Show/hide bicluster #86 rows and columns.
bicluster 86
Mycobacterium tuberculosis H37Rv
19x204
[+] Show/hide bicluster #86 rows (genes).
bicluster 86 genes
Mycobacterium tuberculosis H37Rv
19
[+] Show/hide bicluster #86 rows (short gene names).
bicluster 86 short names
Mycobacterium tuberculosis H37Rv
19
short_name
[+] Show/hide bicluster #86 rows (long gene names).
bicluster 86 long names
Mycobacterium tuberculosis H37Rv
19
long_name
[+] Show/hide bicluster #86 rows (NCBI RefSeq gene IDs).
bicluster 86 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
32
[+] Show/hide bicluster #86 gene upstream sequences.
bicluster 86 upstream sequences
Mycobacterium tuberculosis H37Rv
19
upstream
[+] Show/hide bicluster #86 columns (arrays; conditions).
bicluster 86 arrays
Mycobacterium tuberculosis H37Rv
204
[+] Show/hide bicluster #86 ratios.
bicluster 86 ratios
Mycobacterium tuberculosis H37Rv
19x204
GENES 2867:::H37Ra..7H9.roll.replicate.4 2867:::H37Ra..Dubos.media.replicate.4 2885:::H37Ra..7H9.roll.replicate.2 2885:::H37Rv..7H9.roll.replicate.3 2885:::H37Rv..7H9.roll.replicate.4 2885:::Strain.1843...replicate.3 2885:::Strain.1843..replicate.1 2885:::Strain.1843..replicate.4 2885:::Strain.9800608...replicate.3 2885:::Strain.M3061a..replicate.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.1hr.rep.1 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.05.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration.rep3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.1 4084:::High.iron.wt.vs.high.iron.ideR.KO.3a 4084:::High.iron.wt.vs.high.iron.ideR.KO.3b 4084:::High.iron.wt.vs.low.iron.wt.2a 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.15.min.rep.2 4107:::Palmitate.Glucose..1 4107:::pH4.8vspH6.8..11h. 4107:::pH4.8vspH6.8..4h. 4107:::pH4.8vspH6.8..4h.A 4107:::pH4.8vspH6.8..4h.C 4107:::pH4.8vspH6.8..5h. 4107:::pH4.8vspH6.8..6h. 4107:::pH5.6vspH6.8..4h. 4107:::X0.12mg.mL.Nam.pH5.6..4h..2 4107:::X0.1ug.mL.RifpvsEtOH..6hA 4107:::X0.2ug.mL.RifvsDMSO..6hA 4107:::X0.4ug.mL.INHvsEtOH..6hA 4107:::X0.5ug.mL..124196vsDMSO..6h 4107:::X0.5ug.mL..124196vsDMSO..6hA 4107:::X1.2mg.mL.PZAvspH5.6..7h. 4107:::X100ug.mL.Cephalexin.Ctrl..6h 4107:::X10ug.mL..59vsDMSO..6hA 4107:::X10ug.mL.Amikacin.EtOH..6h 4107:::X10ug.mL.capreomycinvsEtOH..6h 4107:::X10ug.mL.CapvsEtOH..6h 4107:::X10ug.mL.RoxvsEtOH..6h 4107:::X10ug.mL.RoxvsEtOH..6hA 4107:::X10ug.mL.TetvsEtOH..6h 4107:::X10ug.mL.TetvsEtOH..6hA 4107:::X10ug.mLchlorpromazinevsctrl.6hA 4107:::X130ug.mL.TLMvsDMSO..6h 4107:::X1ug.mL..241vsDMSO..6h 4107:::X1ug.mL..241vsDMSO..6hA 4107:::X1ug.mL..59vsDMSO..6hA 4107:::X25ug.mL.TRZ.DMSO..6h 4107:::X30ug.mL.RoxvsEtOH..6hA 4107:::X50ug.mL.RoxvsEtOH..6hA 4107:::X50uM.NigericinvsDMSO..6h.A 4107:::X5ug.mL.AmivsEtOH..6hA 4107:::X5ug.mL.CapvsEtOH..6h 4107:::X5ug.mL.CapvsEtOH..6hA 4363:::H37Rv.hypoxia.1.day.rep.10 4363:::H37Rv.hypoxia.1.day.rep.4 4363:::H37Rv.hypoxia.1.day.rep.6 4363:::H37Rv.hypoxia.12hr.rep.1 4363:::H37Rv.hypoxia.12hr.rep.3 4363:::H37Rv.hypoxia.4.day.rep.1 4363:::H37Rv.hypoxia.4.day.rep.2 4363:::H37Rv.hypoxia.4.day.rep.3 4363:::H37Rv.hypoxia.4.day.rep.4 4363:::H37Rv.hypoxia.4.day.rep.5 4363:::H37Rv.hypoxia.4hr.rep.4 4363:::H37Rv.hypoxia.4hr.rep.7 4363:::H37Rv.hypoxia.7.day.rep.4 4363:::H37Rv.hypoxia.7.day.rep.7 4363:::H37Rv.hypoxia.8hr.rep.1 4364:::H37dosR.mutant.hypoxia.1.day.rep.6 4364:::H37dosR.mutant.hypoxia.12hr.rep.4 4364:::H37dosR.mutant.hypoxia.4hr.rep.2 4364:::H37dosR.mutant.hypoxia.4hr.rep.4 4364:::H37dosR.mutant.hypoxia.4hr.rep.5 4364:::H37dosR.mutant.hypoxia.7.day.rep.1 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.3 4575:::Extracted.Lung.Surfactant.30min.rep.3 4596:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.6 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.3 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media..DS..rep.3 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages..DS..rep.1 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages..DS..rep.2 4599:::SigE.mutant.grown.in.7H9.vs.24hrs.after.infection.in.macrophages.rep.1 4615:::AA_30uM_1h_03 4615:::AA_30uM_1h_04 4615:::AA_30uM_1h_06 4615:::AA_30uM_2h_04 4615:::AA_30uM_2h_07 4615:::AA_30uM_4h_07 4615:::AA_30uM_4h_08 4615:::AA_60uM_24h_01 4615:::AA_60uM_2h_T0_01 4615:::aceatate.induction.3 4615:::Acetate.3mM.2h.05 4615:::Acetate.3mM.60m.03 4615:::CK.for.AA.NA.2h.2 4615:::ETYA_30uM_10min.04 4615:::ETYA_30uM_1h_01 4615:::L2A_30uM_4h_06 4615:::L2A_30uM_4h_08 4615:::MTB1248_PA50_1h_01 4615:::MTB1248_PA50_1h_02 4615:::MTB1254_Bottom_42D_03 4615:::MTB1254_Bottom_42D_04 4615:::MTB1254_FA5_10min_03 4615:::MTB1254_Pellicle_42D_02 4615:::MTB1254_Pellicle_42D_03 4615:::MTB1254.0485.1._LA_10m_01 4615:::MTB1254.0485.1._PA_4h_04 4615:::MTB1254.3524.1._PA_12h_02 4615:::MTB1254.3524.1._PA_12h_06 4615:::MTB1254.B4.1._OA_10MIN_01 4615:::MTB1254.B4.1._PA_4h_01 4615:::MTB1254.B4.1._PA_4h_02 4615:::MTB1254.B4.1.Compl._PA_4h_01 4615:::MTB1254.B4.1.Compl._PA_4h_02 4615:::MTB1254.B4.1.Compl._PA_4h_05 4615:::MTB1254.Rv3524.2._PA50.OA30_30m_02 4615:::MTB1254TA1_OA.30min_01 4615:::MTB6548_PA50_1h_01 4615:::MTB889_PA50_1h_01 4615:::MTB889_PA50_1h_02 4615:::MTB889_PA50_1h_03 4615:::PA_100uM_2h_04 4615:::PA_50uM_10min_06 4615:::PA_50uM_12h_04 4615:::PA_50uM_12h_06 4615:::PA_50uM_24h_01 4615:::PA_50uM_2h_07 4615:::PA_50uM_4h_03 4615:::PA_50uM_8h_01 4615:::PA_50uM_8h_04 4615:::PA_50uM.MAPP_4h_01 4615:::PA_50uM.OA_30uM_2h_02 4615:::PA_50uM.OA_30uM_2h_04 4615:::Starvation_1254_12h_02 4615:::Starvation_1254_12h_03 4615:::Starvation_1254_12h_04 4615:::Starvation_1254_24h_01 4615:::Starvation_1254_24h_02 4615:::Starvation_1254_24h_03 4615:::Starvation_1254_24h_05 4615:::Starvation_1254_24h_06 4615:::Starvation_1254_24h_07 4615:::Starvation_1254_3d_02 4615:::Starvation_1254_3d_03 4615:::Starvation_1254_5d_01 4615:::Starvation_1254_5d_02 4615:::Starvation_1254_5d_03 4615:::Starvation_1254_5d_04 4615:::Starvation_1254_6h_06 4615:::Starvation_1254_OA50_12h_02 4615:::Starvation_1254_OA50_12h_03 4615:::Starvation_1254_OA50_12h_04 4615:::Starvation_1254_OA50_24h_03 4615:::Starvation_1254_OA50_24h_04 4615:::Starvation_1254_OA50_3d_01 4615:::Starvation_1254_OA50_3d_02 4615:::Starvation_1254_OA50_5d_01 4615:::Starvation_1254_OA50_5d_02 4615:::Starvation_1254_OA50_5d_03 4615:::Starvation_1254_OA50_5d_04 4615:::Starvation_1254_PA50_24h_01 4615:::Starvation_1254_PA50_24h_04 4615:::Starvation_1254_PA50_6h_01 4615:::Starvation_1254_PA50_6h_02 4615:::Starvation_1254_PA50_6h_03 4615:::Starvation_1254_PA50.OA30_6h_02 4615:::Starvation_1254_PA50.OA30_6h_04 4615:::Starvation_OA50_24h_01 4615:::Starvation_OA50_24h_02 4615:::TBD092 4615:::Test.3 4615:::Tet_100uM_30M_01 4615:::Tet_20uM_30M_01 4615:::WM_1254.whiB4._10d_01 4615:::X7H9_MTB1254_OA50_10M_01 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.1 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.2 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.3 4638:::CDC1551.wild.type.vs.kstR.null.in.1mg.ml.cholesterol.for.24.hrs.rep.3 4638:::CDC1551.wild.type.vs.kstR.null.rep.1 4638:::CDC1551.wild.type.vs.kstR.null.rep.2 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak.4hr.rep.1 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.24hr.rep.3 4696:::H37Rv.wt.vs.dosS.null.nitric.oxide.treatment.1hr.rep.3 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.3 4696:::H37Rv.wt.vs.dosT.null.nitric.oxide.treatment.1hr.rep.2 4703:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1 4729:::H37Rv.wild.type.vs.PepD.null.mutant.rep.2 4731:::X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.2.rep.1 4735:::H37Rv.dosR.KO.vs.BCG.with.pMFdosR.at.OD.0.4.rep.3 4802:::H37Rv.ctrl.vs.relE1.overexpression.6.hr.rep.1 4802:::H37Rv.ctrl.vs.relE1.overexpression.6.hr.rep.4 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.3 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.4 4802:::H37Rv.ctrl.vs.relE3.overexpression.6.hr.rep.4 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.4 4928:::Mtb.Erdman.strain.200.ppm.CO.rep.1
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RV3800C -1.7236986075513 0 0.944287063267233 1.05670218984667 1.5063626961644 0.0224830253158865 -1.77615899995503 -0.044966050631773 0.134898151895319 0.359728405054184 0.539592607581276 -0.168622689869149 -0.944287063267233 0.741939835424255 -0.708215297450425 -0.303520841764468 NA 0.306586708852998 0.858442784788394 -0.353304683535359 -0.0652732993041866 0.130546598608373 -0.500428627998764 -1.1314038546059 -0.500428627998764 -2.32808100851599 -0.957341723128071 -2.02347227842979 -0.522186394433493 -0.0870310657389155 -2.89378293581894 1.54480141686575 0.0217577664347289 0.130546598608373 2.08874557773397 -0.413397562259849 -0.348124262955662 -7.85455368293712 -6.09217460172409 -3.19839166590515 -6.00514353598517 -6.78842312763541 -6.87545419337432 -8.15916241302333 -0.348124262955662 0.761521825215511 0.565701927302951 0.696248525911324 -0.348124262955662 -4.30803775407632 -6.76666536120068 -4.46034211911942 -0.108788832173644 -4.59088871772779 -4.41682658624996 -4.11221785616376 0.906032363476023 -0.125837828260559 -0.760060482693775 0.870797771563067 0.674490759476595 1.25334476947517 0 -1.2835458482577 -0.694624811998285 -0.654356706954906 0.392614024172944 0.573820496868148 -1.35904854521404 -0.800328587737154 0.503351313042235 1.77053824362606 0.674490759476595 -0.455281262646702 -0.910562525293403 -0.674490759476595 -0.118035882908404 -1.29593168393818 -0.385423291129483 -0.843113449345744 2.4633575563493 0.982410454020258 -0.923759083630989 -1.87684385245661 -0.762467815060499 -1.34898151895319 1.71834550628561 0.578134936694224 1.91105715185035 0.305126772144174 0.963558227823707 0.17665234176768 0.144533734173556 -0.160593037970618 0.89932101263546 1.34898151895319 0.979617531620769 0.642372151882472 -0.658431455679533 0.674490759476595 -0.224830253158865 0.192711645564741 0.674490759476595 -3.14762354422411 -2.60160721512401 -2.21618392399453 -2.47313278474752 -1.15626987338845 -2.11982810121216 -2.08770949361803 0.915380316432522 -1.05991405060608 -0.947498924026646 -0.995676835417831 1.44533734173556 -1.28474430376494 -1.36504082275025 -2.07165018982097 -1.78258272147386 -2.00741297463272 2.24830253158865 0.224830253158865 -2.48919208854458 -2.39283626576221 -2.63372582271813 -2.44101417715339 -0.931439620229584 0.883261708838398 -0.931439620229584 -0.819024493650151 -1.20444778477963 -3.37245379738298 -0.995676835417831 -1.38110012654731 -1.01173613921489 -2.08770949361803 1.10809196199726 0.337245379738298 -5.57257841758044 -3.51698753155653 -4.06300386065663 -5.52440050618926 -2.13588740500922 -4.88202835430678 NA -3.7418177847154 -2.58554791132695 -5.07473999987153 -3.51698753155653 -2.76220025309463 -4.84990974671266 -3.32427588599179 -5.20321443024802 -3.70969917712127 -2.68190373410932 -3.0673270252388 -2.76220025309463 -2.16800601260334 -1.67016759489443 -2.56948860752989 -4.17541898723606 -4.6250794935538 -4.51266436697436 -3.27609797460061 -4.17541898723606 -1.52563386072087 -1.75046411387973 -2.81037816448581 -2.71402234170344 -2.47313278474752 -2.6497851265152 -4.22359689862725 2.23224322779159 1.7665234176768 0.497838417708915 -1.14021056959139 -3.11550493662999 -1.47745594932968 -1.07597335440314 0.256948860752989 0.827596023897663 -0.835871984136639 0.984839268438219 -0.225 0.925 0.225 -0.435608615495301 1.19441071990647 -0.548023742074734 -0.168622689869149 0.140518908224291 -1.83076063286504 1.00389322340703 -0.3 0.581268459386334 0.0354995136566629 -4.50843823439619 -1.39335591102402 -1.67735202027732 1.14485931542738 1.12710955859905 -0.328370501324132 1.34010664053902 NA
RV3805C 0.1 0.65 0.309141598093439 0.674490759476595 0.843113449345744 0.421556724672872 -0.168622689869149 -1.29277395566347 -0.140518908224291 1.88295337020549 -0.112415126579433 -0.412188797457919 -0.562075632897163 -0.374717088598108 -0.711962468336406 -0.0749434177196217 0.275 0.025 1.275 -0.456273160822403 0.358771680572657 -0.674490759476595 -0.990209838380533 -2.16698095065885 -0.990209838380533 -1.67905146508003 -2.31048962288791 -0.73189422836822 -0.904104635043096 0.904104635043096 -3.8890850174076 0.703192493922408 0.61708729058497 0.243964742789407 0.330069946126845 1.44943758951353 0.272666477235219 -2.10957748176722 -3.28634859404554 -6.35743417974748 -4.8075405196736 -5.35287347414404 -3.91778675185341 -3.28634859404554 0.358771680572657 0.301368211681032 1.21982371394703 0.760595962814033 0.932806369488908 -3.68817287628691 -6.21392550751842 -3.22894512515391 0.416175149464282 -4.29090929964898 -3.11413818737066 -3.11413818737066 -0.0454712871557255 0.0606283828743007 -0.803326073084484 2.28872145350485 -0.40924158440153 2.32661419280129 -0.333456105808654 -1.97042244341477 -0.462291419416543 -0.651755115898732 0.212199340060052 -0.666912211617308 -1.38687425824963 -0.666912211617308 2.48576369784633 0.250525139234164 0.255342930373282 0.279431886068875 -0.178258272147386 0.274614094929757 -1.70068027210884 -0.346880962016535 -1.13820315661675 -0.674490759476595 2.29691447821759 1.58596475876929 -0.182294799858539 -0.528654919589764 -0.528654919589764 -1.16668671909465 1.45690004046945 1.34898151895319 1.78065560501821 0.890327802509106 1.94253338729259 0.647511129097532 -0.188857412653447 0.188857412653447 -0.188857412653447 0.21583704303251 1.59179819236476 1.16012410629974 -1.24106299743694 0.21583704303251 0.539592607581276 0.377714825306893 0.998246324025361 -2.29326858222042 -2.18535006070417 -0.35073519492783 -0.404694455685957 -1.268042627816 -1.29502225819506 -1.96951301767166 0.593551868339404 -0.323755564548766 1.61877782274383 -0.269796303790638 0.431674086065021 -0.56657223796034 -1.48387967084851 -0.890327802509106 0.0269796303790638 -1.24106299743694 2.2393093214623 -0.107918521516255 -1.83461486577634 -1.10616484554162 -2.2393093214623 -1.29502225819506 0.21583704303251 0.512612977202212 -0.539592607581276 -0.728450020234723 -0.0809388911371914 -1.37596114933225 -0.809388911371914 -0.944287063267233 0.620531498718468 -0.593551868339404 1.69971671388102 1.5648185619857 -4.74841494671523 -3.45339268852017 -4.26278159989208 -6.44813166059625 -2.85984082018076 -3.26453527586672 -5.12612977202212 -2.10441116956698 -2.42816673411574 -2.13139079994604 -1.96951301767166 -1.88857412653447 -4.42465938216646 -1.5648185619857 -3.39943342776204 -3.5073519492783 -1.51085930122757 -2.05045190880885 -2.07743153918791 -2.2393093214623 -1.69971671388102 -1.29502225819506 -2.56306488601106 -2.64400377714825 -3.5073519492783 -0.701470389855659 -4.3976797517874 -0.971266693646297 -2.40118710373668 -0.917307432888169 -1.67273708350196 -1.34898151895319 -1.32200188857413 -1.10616484554162 0.647511129097532 1.40294077971132 -0.0269796303790638 -1.34898151895319 -1.88857412653447 -1.37596114933225 -1.07918521516255 0.512612977202212 0.419500350406175 0.732069238944109 0.616912280009081 -0.578729725723745 0.745270653989571 -0.603710864963619 0.537306198227118 1.01745216260029 0.125752514478687 -0.800243273955282 0.594466432081067 -1.00085725599753 0.65803976534302 0.3 0.466955141176104 NA NA -0.469210963114153 -1.96482090804052 0.263931166751711 0.469210963114153 -1.02639898181221 2.17010070440296 NA
[+] Show/hide bicluster #86 motif PSSM #1. bicluster 86 motif PSSM #1 Mycobacterium tuberculosis H37Rv 23x4
POSITION A C G T
1 0.8 0 0.2 0
2 0.8 0 0 0.2
3 0.2 0 0.2 0.6
4 0 0 1 0
5 0.2 0 0 0.8
6 0.036834 0.463166 0.263166 0.236834
7 0.473669 0.326331 0.126331 0.073669
8 0.673669 0.126331 0.126331 0.073669
9 0.073669 0.326331 0.326331 0.273669
10 0.836834 0.063166 0.063166 0.036834
11 0 0.6 0.4 0
12 0 0.8 0 0.2
13 0 0.2 0 0.8
14 0 0.2 0 0.8
15 0 0 0.6 0.4
16 0 0.2 0 0.8
17 0 0 0 1
18 0 0.2 0.8 0
19 0 0 1 0
20 1 0 0 0
21 0 0 0 1
22 0.2 0 0.8 0
23 0 0.6 0 0.4 [+] Show/hide bicluster #86 motif PSSM #2. bicluster 86 motif PSSM #2 Mycobacterium tuberculosis H37Rv 15x4
POSITION A C G T
1 0.125 0 0.875 0
2 0 1 0 0
3 0 1 0 0
4 0 0 1 0
5 0.75 0.125 0 0.125
6 0 0 0 1
7 0 0 1 0
8 0 0.625 0.25 0.125
9 0.125 0.125 0.125 0.625
10 0 0.125 0.875 0
11 0 1 0 0
12 0 0.625 0.25 0.125
13 0 0 0.875 0.125
14 0 0.25 0.5 0.25
15 0 0.75 0.25 0 |