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[+] Show/hide bicluster #95 rows and columns.
bicluster 95
Mycobacterium tuberculosis H37Rv
4x43
[+] Show/hide bicluster #95 rows (genes).
bicluster 95 genes
Mycobacterium tuberculosis H37Rv
4
[+] Show/hide bicluster #95 rows (short gene names).
bicluster 95 short names
Mycobacterium tuberculosis H37Rv
4
short_name
[+] Show/hide bicluster #95 rows (long gene names).
bicluster 95 long names
Mycobacterium tuberculosis H37Rv
4
long_name
[+] Show/hide bicluster #95 rows (NCBI RefSeq gene IDs).
bicluster 95 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
8
[+] Show/hide bicluster #95 gene upstream sequences.
bicluster 95 upstream sequences
Mycobacterium tuberculosis H37Rv
4
upstream
[+] Show/hide bicluster #95 columns (arrays; conditions).
bicluster 95 arrays
Mycobacterium tuberculosis H37Rv
43
[+] Show/hide bicluster #95 ratios.
bicluster 95 ratios
Mycobacterium tuberculosis H37Rv
4x43
GENES 2867:::H37Ra..Youman.media.replicate.2 2867:::H37Rv..7H9.shake.replicate.4 2885:::Strain.1006...replicate.4 2885:::Strain.1254...replicate.3 2885:::Strain.3160..replicate.1 2885:::Strain.9800608...replicate.3 2885:::Strain.9802826..replicate.2 2885:::Strain.M3061a..replicate.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.1 4062:::MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.05.mM.DETA.NO.rep.3 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.4 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.4 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Tetracyclin.for.30.min.rep.4 4101:::H37Rv.Day24.1 4101:::NRP.Day14..2 4101:::NRP.Day30..1 4107:::Palmitate.Glucose..1 4107:::X0.12mg.mL.Nam.pH5.6..2h..1 4107:::X0.1mMGSNO.5ug.mLKCNvsDMSO.6h.A 4107:::X0.2ug.mL.Mtm.ctrl..4h...1 4107:::X100ug.mL.TriclosanvsEtOH..6h 4107:::X100ug.mL.TriclosanvsEtOH..6hA 4107:::X5ug.mL.KCN.DMSO..6h..2 4363:::H37Rv.hypoxia.1.day.rep.6 4364:::H37dosR.mutant.hypoxia.4hr.rep.1 4365:::H37Rv.diamide.1h.rep.3 4615:::L2A_30uM_10min_07 4615:::PA_100uM_2h_T0_05 4696:::H37Rv.wt.vs.dosS.null.nitric.oxide.treatment.1hr.rep.1 4703:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.2 4729:::H37Rv.wild.type.vs.PepD.null.mutant..DS..rep.1 4735:::H37Rv.dosR.KO.vs.BCG.with.pMFdosR.at.OD.0.4.rep.2 4735:::H37Rv.dosR.KO.vs.BCG.with.pMFdosR.at.OD.0.4.rep.3 4799:::H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.2 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.2 Raghavan_Nature2008:::espR.mutant..R...rep2 Rohde_CellHostMicrobe2007:::CDC1551.ctrl.vs.pH.5.5.7H9.broth.for.2.hr
RV1176C NA NA NA NA NA NA NA NA -1.18035882908404 -2.52934034803723 0.983632357570035 NA 0.674490759476595 0.140518908224291 -0.786905886056028 0.983632357570035 -0.337245379738298 0.0562075632897163 -0.282556939780736 0.847670819342207 0.756523419412938 0.256948860752989 0.513897721505977 -1.73440481008267 1.50957455692381 -1.0920326582002 -0.89932101263546 -2.79431886068875 -2.29491368163378 0.674490759476595 NA -2.28042113918277 0.513897721505977 1.29458710286637 -0.813671392384464 NA 2.72205199360197 1.22853674047523 0.656261279490741 -1.35710791364568 -0.674490759476595 -0.675864467744368 -2.1565
RV1264 0.499622784797478 0 -1.43601258469211 0.456913095129306 -0.174062131477831 -0.0217577664347289 -0.19581989791256 0.174062131477831 -0.147544853635505 -1.13820315661675 1.22251450155133 0.853652367462566 -0.141998054626652 0.319495622909966 -0.993986382386561 0.319495622909966 -0.177497568283315 -0.177497568283315 -0.551856075935396 1.07305348098549 2.05413094931509 NA 0.178541671626158 NA 1.2497917013831 -1.40849540949524 -0.853032431102753 -2.47974543925219 NA NA 0.252934034803723 -2.65299698727461 1.12415126579433 0.849358734155713 -0.128474430376494 0 NA 0.55 NA NA NA -0.57 NA
RV1329C 0.0709990273133256 0.319495622909966 -1.16162297465414 0.262301962018676 -1.08667955693451 -0.374717088598109 -0.562075632897163 1.12415126579433 -0.716646431943882 -1.9813166059625 0.800957776878457 -0.0843113449345745 0.55546297839249 -0.277731489196245 -1.15060188381302 0.674490759476595 -1.19027781084105 NA -0.870706253142514 0.478275265810677 NA NA 0.196726471514007 -3.34435001573812 1.06794370250461 -1.57381177211206 -2.55744412968209 NA NA 0.143825235476627 0.168622689869149 NA NA 1.95487999780505 -0.47611112433642 -0.25 NA NA 1.61877782274383 NA -0.25842565 -0.921325675710583 -3.4827815160205
RV3348 0.32859806230911 0.432365871459356 -1.19027781084105 0.357083343252315 NA -0.15870370811214 -0.674490759476595 -0.357083343252315 NA NA -1.05991405060608 0.867202405041337 0 -0.702594541121453 1.43329286388776 0.843113449345744 -0.927424794280318 -1.46139664553262 NA NA NA NA NA NA NA NA NA NA NA NA 0.711962468336406 -3.20383110751383 1.41643059490085 -0.381233907530249 -0.629524708844822 NA 0.9 1.3 NA NA 0.063849695 NA -2.99675951276646
[+] Show/hide bicluster #95 motif PSSM #1. bicluster 95 motif PSSM #1 Mycobacterium tuberculosis H37Rv 13x4
POSITION A C G T
1 0.25 0 0 0.75
2 0.25 0 0.5 0.25
3 0 0 0.25 0.75
4 0 0 0.25 0.75
5 0 1 0 0
6 1 0 0 0
7 0 1 0 0
8 0.25 0.25 0.5 0
9 0 0 0 1
10 0.5 0.25 0 0.25
11 0 0.25 0.25 0.5
12 0 0 0 1
13 0 0.25 0 0.75 [+] Show/hide bicluster #95 motif PSSM #2. bicluster 95 motif PSSM #2 Mycobacterium tuberculosis H37Rv 8x4
POSITION A C G T
1 0 0 0 1
2 0.5 0 0 0.5
3 0.25 0 0.75 0
4 0.75 0.25 0 0
5 0 1 0 0
6 0 0 1 0
7 0.5 0 0 0.5
8 0 0 0 1 |