Bicluster 97 (zzz

GENES 2867:::H37Ra..7H9.shake.replicate.3 2867:::H37Ra..Youman.media.replicate.2 2885:::Strain.1006...replicate.4 2885:::Strain.3160..replicate.1 2885:::Strain.9800608..replicate.1 2885:::Strain.9802826..replicate.1 2885:::Strain.CDC1551..replicate.1 2885:::Strain.CDC1551..replicate.2 2885:::Strain.M3061a..replicate.1 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.1 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.2 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.4 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.1 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.2 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.3 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.005.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.1 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.6 4084:::High.iron.wt.vs.high.iron.ideR.Complement.3b 4084:::High.iron.wt.vs.low.iron.wt.1a 4084:::High.iron.wt.vs.low.iron.wt.1b 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.1 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.5 4099:::H37Rv.hypoxia.2hr.rep.4 4099:::H37Rv.hypoxia.2hr.rep.5 4107:::H2O2.4mM.vs.ctrl.12h.1 4107:::Mtm.0.2ug.mL.vs.ctrl.12h.1 4107:::Mtm.0.2ug.mL.vs.ctrl.8h.1 4107:::Mtm.0.2ug.mL.vs.ctrl.8h.2 4107:::PBS.Tw.DMSOvs7H9..6h 4107:::pH4.8vspH6.8..4h.A 4107:::pH4.8vspH6.8..4h.B 4107:::pH5.2vspH6.8..5h. 4107:::Succinate.7H9.based.medium..1 4107:::Succinate.7H9.based.medium..2 4107:::UV.40J.vs.8h.2 4107:::UV.40J.vs.ctrl.8h.1 4107:::UV.60J.vs.ctrl.6h.1 4107:::WT.t.0h.WT.t.6h..2 4107:::X.109..10ug.mL..DMSO..12h..replicate.2..GEO.acc..GSM28054. 4107:::X.109..10ug.mL..vs.DMSO..12h..replicate.1..GEO.acc..GSM28053. 4107:::X0.02mM.GSNOvsDMSO..6h 4107:::X0.13mg.mL.TLMvsDMSO..6h 4107:::X0.13mg.mL.TLMvsDMSO..6hA 4107:::X0.1mg.mLTriclosanvsEtOH.6hC 4107:::X0.1ug.mL.RifpvsEtOH..6h 4107:::X0.1ug.mL.RifpvsEtOH..6hA 4107:::X0.2mg.mL.AmpvsEtOH..6hC 4107:::X0.2mM.NaN3.DMSO 4107:::X0.2ug.mL.Mtmvsctrl..4h.A 4107:::X0.5ug.mL..121940vsDMSO.6hA 4107:::X0.5ug.mL..124196vsDMSO..6hA 4107:::X10ug.mL.clotrimvsEtOH..6h 4107:::X10ug.mL.EconazolevsEtOH..6h 4107:::X10ug.mL.EconazolevsEtOH..6hA 4107:::X10ug.mL.menadionevsDMSO..6h 4107:::X10ug.mL.methoxatinvsDMSO..6h.A 4107:::X10ug.mL.PA.1vsDMSO..6h 4107:::X10ug.mL.PA.1vsDMSO..6hA 4107:::X10ug.mLMethoxatinvsDMSO.6h 4107:::X10uM.CCCP.DMSO..6h 4107:::X12ug.mLEthionamidevsEtOH.6h 4107:::X12ug.mLEthionamidevsEtOH.6hA 4107:::X1mM.DTNBvsDMSO..6h 4107:::X1ug.mL..111891.DMSO..12h..1 4107:::X1ug.mL..111891.DMSO..12h..2 4107:::X1ug.mL..121940.DMSO..12h 4107:::X1uM.ValinomycinvsDMSO..6h 4107:::X1uM.ValinomycinvsDMSO..6h.B 4107:::X20ug.mLProcept6778vsDMSO.6hB 4107:::X24ug.mL.cltrmazole.DMS..6h..1 4107:::X24ug.mL.cltrmazole.DMS..6h..3 4107:::X25J.UVvs.ctrl..6h. 4107:::X25ug.mL.TRZ.DMSO..6h 4107:::X2mM.ZnSO4.DMSO..6h 4107:::X2ug.mL..121940vsDMSO..6h 4107:::X40mJ.UV.ctrl..6h. 4107:::X40ug.mL.5CL.pH5.6..4h..3 4107:::X4mM.H2O2.ctrl..2h...1 4107:::X4mM.H2O2vsctrl..1h. 4107:::X4mM.H2O2vsctrl..2h.A 4107:::X4mM.H2O2vsctrl..4h.A 4107:::X50ug.mL.PA.1vsDMSO..6h 4107:::X50ug.mL.Thioridazine.DMSO..6h 4107:::X60J.UVvsctrl..6h. 4363:::H37Rv.hypoxia.4.day.rep.6 4363:::H37Rv.hypoxia.7.day.rep.5 4363:::H37Rv.hypoxia.7.day.rep.7 4364:::H37dosR.mutant.hypoxia.12hr.rep.1 4364:::H37dosR.mutant.hypoxia.7.day.rep.1 4364:::H37dosR.mutant.hypoxia.8hr.rep.3 4365:::H37Rv.diamide.1h.rep.2 4365:::H37Rv.diamide.1h.rep.6 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.1 4366:::H37Rv.vs.H37.sigma.H.null.mutant.rep.1 4396:::Strain.27.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2 4396:::Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4396:::Strain.32.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.3 4396:::Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.5.3 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.3 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.3 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.2 4575:::Extracted.Lung.Surfactant.2hrs.rep.1 4575:::Extracted.Lung.Surfactant.30min.rep.3 4575:::Purified.Surfactant.Lipids.30min.rep.2 4575:::Whole.Lung.Surfactant.30min.rep.5 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection.rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media..DS..rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2.hrs.rep.3 4615:::AA_30uM_1h_01 4615:::AA_30uM_1h_07 4615:::AA_30uM_2h_04 4615:::AA_30uM_30min_02 4615:::AA_60uM_2h_T0_03 4615:::aceatate.induction.1 4615:::aceatate.induction.3 4615:::Acetate.3mM.10m.06 4615:::Acetate.3mM.30m.08 4615:::CA_50uM_10min_01 4615:::ETYA_10uM.AA_1h_02 4615:::ETYA_30uM_10min.02 4615:::L2A_30uM_10min_06 4615:::L2A_30uM_2h_05 4615:::L2A_30uM_4h_08 4615:::MDA_1254.pMV261_02 4615:::MDA_1254.pMV261_04 4615:::MDG_1254.pMV261.3524_02 4615:::MDGCy3.7H9Cy5.02 4615:::MTB1254_Bottom_21D_01 4615:::MTB1254_FA5_10min_02 4615:::MTB1254.Rv3524.2._PA50.OA30_2h_02 4615:::MTB1254vsMTB1254.0485.1. 4615:::MTB1370_PA50_1h_04 4615:::OA_50uM_24h_01 4615:::OA_50uM_24h_04 4615:::OA_50uM_2h_06 4615:::OA_50uM_2h_10 4615:::OA_50uM_4h_05 4615:::OA_50uM_4h_08 4615:::PA_100uM_24h_01 4615:::PA_50uM_1h_08 4615:::PA_50uM_1h_10 4615:::PA_50uM_30min_02 4615:::PA_50uM_8h_05 4615:::PA_50uM.0.5.BSA_4h_01 4615:::PA_5uM_2h_T0_01 4615:::Rv.MT71_100503_01 4615:::Rv.MT71_100603_01 4615:::Rv.MT96_100503_02 4615:::Rv.p0485.2._300uM.PA_4h 4615:::SDS_3h_01 4615:::Starvation_1254_3d_02 4615:::Starvation_1254_3d_04 4615:::Starvation_1254_5d_01 4615:::Starvation_1254_5d_03 4615:::Starvation_1254_6h_03 4615:::Starvation_1254_6h_04 4615:::Starvation_1254_6h_05 4615:::Starvation_1254_OA50_12h_01 4615:::Starvation_1254_OA50_12h_03 4615:::Starvation_1254_OA50_5d_03 4615:::Starvation_1254_OA50_5d_04 4615:::Starvation_1254_OA50_6h_03 4615:::Starvation_1254_PA50_24h_04 4615:::Starvation_1254_PA50.OA30_24h_03 4615:::TBD044 4615:::TBD816 4615:::TBD817 4615:::TBE736 4615:::Test_ceramide_5uM 4615:::WT_85.1_OA_10min_01 4630:::H37Rv.wild.type.Cy3.vs.Rv0485.Tn.mutant.Cy5.rep.2 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.1 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak.4hr.rep.1 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.2199.99_Uganda.rep.1 4703:::CDC1551.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.1 4735:::H37Rv.dosR.KO.vs.BCG.with.pMFdosR.at.OD.0.4.rep.4 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.6hr.rep.2 4795:::CDC1551.ctrl.vs.ctrl.at.0.hr.rep.1 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.2 4799:::H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2 4799:::H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.3 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.4 4815:::H37Rv.reaeration.for.24hrs.rep.6 4815:::H37Rv.reaeration.for.6hrs.rep.3 4860:::CDC1551.nadABC.null.nicotinamide.starvation.rep.2 4928:::Mtb.Erdman.strain.2000.ppm.CO.rep.1 Raghavan_Nature2008:::Complemented.espR.mutant..R...rep3 Rohde_CellHostMicrobe2007:::M..bovis.ctrl..vs.2.hr.after.macrophage.infection Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.48hrs RV1703C 0.134898151895319 1.05220558478349 -0.674490759476595 -0.438418993659787 -1.41643059490085 -1.31525698097936 -0.910562525293404 0.0674490759476596 1.07918521516255 0.276714157733988 1.03767809150245 0.830142473201963 0.622606854901472 0.795553203485215 0.795553203485215 0.830142473201963 -0.553428315467976 -0.069178539433497 -1.45274932810344 NA -0.553428315467976 -1.59110640697043 0.138357078866994 0.415071236600982 0.0345892697167485 -0.0345892697167485 0.240889556955927 -0.401482594926545 -1.10809196199726 0.833194467588735 -0.7935185405607 -0.436435197308385 -0.436435197308385 -0.753842613532665 0.23805556216821 -0.2 0.15 1.5 -0.26497851265152 -0.9876471835193 -0.385423291129483 -0.168622689869149 -0.939469272128115 -1.42124838603997 -0.746757626563373 -0.674490759476595 -0.650401803781002 -0.289067468347112 0 -0.240889556955927 -0.62631284808541 -1.90302749995182 0.409512246825076 0.770846582258966 0.770846582258966 0.9876471835193 0.722668670867781 2.11982810121216 -0.26497851265152 -0.240889556955927 0.722668670867781 -0.0722668670867781 -0.891291360736929 0.505868069607446 0.963558227823707 0.674490759476595 1.03582509491049 0.9876471835193 -0.433601202520668 0.674490759476595 -0.337245379738298 0.481779113911854 0.554045980998632 1.56578212021352 0.963558227823707 1.30080360756201 1.25262569617082 0.843113449345744 1.01173613921489 1.08400300630167 -4.04694455685957 -3.2760979746006 1.42124838603997 0.554045980998632 0.481779113911854 -0.144533734173556 -3.87832186699042 1.75849376577827 -0.457690158216261 0 NA -0.409512246825076 -1.87893854425623 -0.650401803781002 -1.9752943670386 0.0481779113911854 -3.20383110751383 -0.144533734173556 -0.279666900270783 -0.559333800541567 -0.0164509941335755 0.545332954470439 -1.42073585506772 0.674490759476595 -0.15 -0.45 -0.1 -0.4 1.44689146790947 NA -0.837674007737062 -0.271972080434111 1.55568030008311 0.772400708432875 -0.533065277650858 -0.525 1.175 0.825 0.025 -2.7102265062605 0.233005898728278 1.14050255693315 0.628762572393436 -0.422985730519221 -0.171480701561846 -2.02347227842979 0.174062131477831 1.54480141686575 -0.456913095129306 0.119027781084105 0.575300941906508 0.436435197308385 -0.257893525682228 1.36881948246721 -0.0991898175700875 0.853032431102753 0.734004650018648 0.376921306766333 0.654652795962578 0.575300941906508 0.31740741622428 1.19027781084105 0.694328722990613 1.28946762841114 0.297569452710263 0.15870370811214 0.595138905420525 1.05141206624293 -2.7178010014204 0.595138905420525 -0.0991898175700875 0.039675927028035 -0.694328722990613 0.39675927028035 0.833194467588735 0.654652795962578 1.07125002975695 0.595138905420525 0.694328722990613 -1.38865744598123 -1.11092595678498 -2.73763896493442 -0.39675927028035 -0.47611112433642 0.614976868934543 -0.416597233794368 0.892708358130788 1.03157410272891 NA 0.734004650018648 -0.95222224867284 -4.58256957173804 -4.66192142579411 -4.20564826497171 -4.68175938930813 -3.1740741622428 -2.97569452710263 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