Bicluster 99 (zzz

GENES 2867:::H37Ra..Dubos.media.replicate.3 2867:::H37Ra..Youman.media.replicate.3 2885:::Strain.9802501..replicate.4 2885:::Strain.M3061a..replicate.1 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.2 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.4 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.6 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.001.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.05.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.2 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.4 4089:::H37Rv.whiB7.null.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.3 4089:::H37Rv.whiB7.null.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.4 4089:::H37Rv.whiB7.null.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.5 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.2 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.3 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.5 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.2 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.2 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.4 4100:::H37Rv.0.2..Oxygen..2h..6 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.6 4101:::NRP.Day12..2 4101:::NRP.Day14..1 4101:::NRP.Day8..3 4107:::DIPED..100ug.mL..DMSO..12h..2 4107:::pH4.8vspH6.8..11h. 4107:::UV.20J.vs.ctrl.8h.1 4107:::X0.12mg.mL.BZAvspH5.6..7h. 4107:::X0.12mg.mL.PZA.pH5.6..2.5h. 4107:::X0.12mg.mL.PZA.pH5.6..5h. 4107:::X0.12mg.mL.PZAvspH5.6..11h. 4107:::X0.12mg.mL.PZAvspH5.6..4h. 4107:::X0.12mg.mL.PZAvspH5.6..5.5h. 4107:::X0.12mg.mL.PZAvspH5.6..6h.A 4107:::X0.13mg.mL.TLMvsDMSO..6hA 4107:::X0.1mg.mL.TriclosanvsEtOH..6hA 4107:::X0.1mMGSNO.20ug.mLCPZvsDMSO.6h 4107:::X0.2ug.mL.Mtmvsctrl..1.5h. 4107:::X0.2ug.mL.Mtmvsctrl..4h.B 4107:::X1.2mg.mL.PZAvspH5.6..16h. 4107:::X1.2mg.mL.PZAvspH5.6..4h. 4107:::X1.2mg.mL.PZAvspH5.6..4h.A 4107:::X1.2mg.mL.PZAvspH5.6..6h. 4107:::X100ug.mLCephalexinvsEtOH.6hA 4107:::X10ug.mL..109vsDMSO..6h 4107:::X10ug.mL..59vsDMSO..6hA 4107:::X10ug.mL.CapvsEtOH..6h 4107:::X10ug.mL.ChlorprovsEtOH 4107:::X10ug.mL.ChlorprovsEtOH..6h 4107:::X10ug.mL.ClotrimvsEtOH..6hA 4107:::X10ug.mL.menadionevsDMSO..6h 4107:::X10ug.mL.OfloxvsDMSO..6h 4107:::X10ug.mL.OfloxvsDMSO..6hA 4107:::X10ug.mL.PA.21vsDMSO..6h 4107:::X10ug.mL.TriclosanvsDMSO..6h 4107:::X20ug.mL.CPZvsDMSO..6h 4107:::X20ug.mL.KCN.DMSO..6h 4107:::X20ug.mLProcept6778vsDMSO.6h 4107:::X20uM.DCCD.DMSO..6h..2 4107:::X25J.UVvs.ctrl..6h. 4107:::X40ug.mL.5CL.pH5.6..2h..2 4107:::X40ug.mL.5CL.pH5.6..4h..1 4107:::X4mM.H2O2vsctrl..2h. 4107:::X50ug.mL.RoxvsEtOH..6h 4107:::X50ug.mL.Triclosan.EtOH 4107:::X50uM.CCCP.DMSO..6h..1 4107:::X50uM.CCCPvsDMSO..6h 4107:::X5ug.mL.OfloxvsEtOH..6hA 4107:::X60J.UV.ctrl..2h. 4363:::H37Rv.hypoxia.1.day.rep.6 4363:::H37Rv.hypoxia.4hr.rep.4 4363:::H37Rv.hypoxia.8hr.rep.2 4396:::H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4396:::H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3 4396:::Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.1 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.1 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.4 4575:::Extracted.Lung.Surfactant.2hrs.rep.1 4575:::Purified.Surfactant.Lipids.30min.rep.1 4575:::Whole.Lung.Surfactant.2hrs.rep.2 4575:::Whole.Lung.Surfactant.2hrs.rep.3 4583:::X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection..DS..rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2.hrs.rep.2 4615:::AA_30uM_10min_02 4615:::AA_30uM_10min_03 4615:::AA_30uM_1h_05 4615:::AA_30uM_24h_03 4615:::AA_30uM_2h_05 4615:::AA_30uM_30min_01 4615:::AA_30uM_30min_07 4615:::AA_30uM_30min_09 4615:::AA_60uM_24h_01 4615:::AA_60uM_24h_03 4615:::AA_60uM_2h_T0_01 4615:::Acetate.3mM.10m.01 4615:::Acetate.3mM.30m.06 4615:::CHP_25uM_24h_01 4615:::CHP_25uM_2h_01 4615:::CHP.AA.30m.1 4615:::CK_OA_NA_0.05_2h 4615:::CK.for.OA.PA.Na.4h 4615:::CK.MDG.AA.Na.2h 4615:::CK.PA.Na.4h.2 4615:::ETYA_30uM_10min.01 4615:::ETYA_30uM_10min.03 4615:::L2A_30uM_10min_02 4615:::L2A_30uM_1h_03 4615:::L2A_30uM_1h_06 4615:::L2A_30uM_30min_07 4615:::L2A_30uM_4h_03 4615:::L2A_30uM_4h_05 4615:::LAA_50uM_10min_01 4615:::LAA_50uM_30min_01 4615:::MAPP_5uM_30m_01 4615:::MDA_1254.pMV261.3524_04 4615:::MDG_1254.pMV261_01 4615:::MDG_1254.pMV261_04 4615:::MDG_1254.pMV261.3524_02 4615:::MDGCy3.7H9Cy5.01 4615:::MDGCy3.7H9Cy5.03 4615:::MTB1254_Bottom_21D_02 4615:::MTB1254_FA5_10min_04 4615:::MTB1254_Pellicle_21D_01 4615:::MTB1254_Pellicle_21D_02 4615:::MTB1254_Pellicle_21D_03 4615:::MTB1254.0485.1._OA_10m_01 4615:::MTB1254.0485.1._OA_10m_03 4615:::MTB1254.0485.1._PA_10m_03 4615:::MTB1254.0485.1._PA_30m_02 4615:::MTB1254.0485.1._PA_4h_04 4615:::MTB1254.3524.1._INH_20MIN 4615:::MTB1254.3524.1._OA_10min_02 4615:::MTB1254.3524.1._OA_10min_04 4615:::MTB1254.3524.1._PA_12h_05 4615:::MTB1254.B4.1._OA_10MIN_02 4615:::MTB1254.B4.1._OA_30MIN_03 4615:::MTB1254.B4.1._PA_4h_04 4615:::MTB1254.B4.1.Compl._PA_4h_01 4615:::MTB1254.B4.1.Compl._PA_4h_03 4615:::MTB1254.fadA._01 4615:::MTB1370_PA50_1h_01 4615:::MTB889_PA50_1h_01 4615:::OA_50uM_10min_03 4615:::OA_50uM_10min_04 4615:::OA_50uM_10min_08 4615:::OA_50uM_1h_06 4615:::OA_50uM_1h_08 4615:::OA_50uM_2h_01 4615:::OA_50uM_2h_04 4615:::OA_50uM_2h.0.5.BSA_30min._01 4615:::OA_50uM_2h.1.0..BSA_30min_01 4615:::OA_50uM_30min_04 4615:::OA_50uM_30min_06 4615:::OA_50uM_30min_08 4615:::OA_50uM_30min_09 4615:::PA_100uM_24h_01 4615:::PA_100uM_2h_03 4615:::PA_100uM_2h_T0_05 4615:::PA_300uM_2h_T0_01 4615:::PA_50uM_10min_04 4615:::PA_50uM_10min_08 4615:::PA_50uM_10min_09 4615:::PA_50uM_1h_06 4615:::PA_50uM_1h_07 4615:::PA_50uM_24h_01 4615:::PA_50uM_24h_04 4615:::PA_50uM_24h.PA_100uM_1h_01 4615:::PA_50uM_30.min_06 4615:::PA_50uM_30min_08 4615:::PA_50uM_30min_11 4615:::PA_50uM_3d_02 4615:::PA_50uM_3d_03 4615:::PA_50uM_4h 4615:::PA_50uM_4h_01 4615:::PA_50uM_4h_04 4615:::PA_50uM_4h_05 4615:::PA_50uM_4h_06 4615:::PA_50uM_4h_07 4615:::PA_50uM_8h_06 4615:::PA_50uM.0.5.BSA_4h_01 4615:::PA_50uM.AA_30uM_30min_01 4615:::PA_50uM.AA_30uM_30min_04 4615:::PA_50uM.OA_10uM_30min_02 4615:::PA_50uM.OA_10uM_30min_03 4615:::PA_50uM.OA_30uM_30min_01 4615:::PA_50uM.OA_30uM_30min_02 4615:::PA_50uM.OA_30uM_4h_04 4615:::Rv.MT106_100603_01 4615:::Rv.MT71_100503_02 4615:::Rv.MT90_100503_02 4615:::Rv.MT96_100503_02 4615:::Rv.MT96_100603_01 4615:::Rv.p0485.2._300uM.PA_4h 4615:::Spe_100uM_30M_01 4615:::Starvation_1254_24h_01 4615:::Starvation_1254_3d_02 4615:::Starvation_1254_OA50_6h_01 4615:::Starvation_1254_PA50_24h_01 4615:::Starvation_1254_PA50_24h_02 4615:::Starvation_1254_PA50_6h_01 4615:::TBD091 4615:::TBD1115 4615:::TBD1137 4615:::TBE060 4615:::TBE736 4615:::Test_361.3 4615:::Tet_5ug_30M_01 4615:::WT_85.1_PA_10min_01 4615:::X2.2..Dipyridyl_1mM.Dpd.AA_50uM_01 4615:::X7H9_MTB1254_OA100_10M_01 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.1 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.3 4638:::CDC1551.wild.type.vs.kstR.null.in.1mg.ml.cholesterol.for.24.hrs.rep.3 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.24hr.rep.1 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.24hr.rep.2 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.4hr.rep.1 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak.4hr.rep.1 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.2336.02_Haarlem.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.2 4703:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2336.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::H37Rv.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::H37Rv.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::CDC1551.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.2333.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.4850.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.947.01_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2 4731:::X0.2mg.ml.Ampicillin.vs.Ethanol.6hrs 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.4.rep.5 4795:::CDC1551.ctrl.vs.ctrl.at.0.hr.rep.2 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1 4799:::H37Rv.KatG.null..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3 4799:::H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1 4799:::H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.2 4815:::H37Rv.reaeration.for.24hrs.rep.2 4815:::H37Rv.reaeration.for.24hrs.rep.4 4815:::H37Rv.reaeration.for.4hrs.rep.1 4815:::H37Rv.reaeration.for.4hrs.rep.2 4815:::H37Rv.reaeration.for.4hrs.rep.7 4860:::CDC1551.nadABC.null.nicotinamide.starvation.rep.3 4928:::Mtb.Erdman.strain.200.ppm.CO.rep.1 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.DS.rep.2 Raghavan_Nature2008:::ESPR..mutant..R...rep3 Raghavan_Nature2008:::espR.mutant.complemented.with.N.terminal.Flag.espR..RFL..rep2 Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.48hrs RV0025 0.39675927028035 0.833194467588735 0.674490759476595 NA 1.26614932042098 NA -0.816488814103247 1.49097957357984 0.283996109253303 -0.0946653697511011 0.189330739502202 -0.567992218506606 0 1.07577007207659 -0.809388911371914 -0.616677265807173 -0.423965620242431 -1.31043918984024 -1.54169316451793 -0.0770846582258966 -0.23125397467769 -0.46250794935538 -0.0385423291129483 0.616677265807173 0.925015898710759 -0.0385423291129483 0.0385423291129483 0.46250794935538 2.04274344298626 2.54379372145459 NA 0.0374717088598109 0.187358544299054 1.08667955693452 0.187358544299054 1.31965583375856 -0.0879770555839037 -0.0293256851946346 1.17302740778538 -0.439885277919519 -0.0879770555839037 0.821119185449768 1.20235309298002 0.967747611422941 0.0879770555839037 -0.117302740778538 1.02639898181221 -0.674490759476595 1.02639898181221 -0.175954111167807 0.351908222335615 0.997073296617575 1.49560994492636 -0.70381644467123 0.234605481557077 -1.99414659323515 -1.87684385245661 0.293256851946346 -1.26100446336929 -1.02639898181221 0.410559592724884 -1.20235309298002 -0.32258253714098 -0.351908222335615 -0.410559592724884 0.410559592724884 -1.05572466700684 1.90616953765125 0.0879770555839037 NA -0.469210963114153 0.909096241033672 2.31672913037613 0.0293256851946345 0.70381644467123 NA -2.40470618596003 -1.99414659323515 0.498536648308788 0.0586513703892691 -1.80525467977559 -1.01173613921489 1.60687504463542 NA NA NA -0.823107367496862 1.05174830291266 0.960291928746339 0.210778362336436 -0.126467017401862 -2.48718467556994 0.941476685102747 0.61943028931524 -0.143508672229063 0.358771680572657 -0.776686329094261 -1.49205531641792 0.490538734164797 1.38985974680026 NA -0.470099620241263 -1.81908113919445 -0.0408782278470664 0.122634683541199 0.551856075935396 -0.429221392394197 0.470099620241263 -1.59425088603559 -1.20590772148846 -0.286147594929465 -0.245269367082398 NA NA 1.53293354426499 NA 0.674490759476595 0.776686329094261 -0.0204391139235332 -2.16654607589452 0.0613173417705995 -1.43073797464732 -1.10371215187079 -0.592734303782463 -0.674490759476595 -0.981077468329593 0.735808101247195 2.10522873412392 2.22786341766512 1.92127670881212 1.67600734172972 1.10371215187079 0.817564556941328 -1.06283392402373 0.96063835440606 -0.878881898711927 -1.06283392402373 -0.122634683541199 0.163512911388265 -0.96063835440606 -0.265708481005931 -2.08478962020039 -0.388343164547131 0.654051645553062 1.59425088603559 -1.55337265818852 -0.878881898711927 0.245269367082398 -0.919760126558994 0.265708481005931 0.204391139235332 0.224830253158865 -4.70099620241263 0.531416962011863 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