Bicluster 106 (zzz

GENES 2867:::H37Ra..7H9.shake.replicate.2 2867:::H37Ra..Dubos.media.replicate.3 2867:::H37Rv..Dubos.media.replicate.1 2867:::H37Rv..Dubos.media.replicate.2 2867:::H37Rv..Dubos.media.replicate.3 2867:::H37Rv..Youman.media.replicate.2 2885:::Strain.1006...replicate.3 2885:::Strain.3160..replicate.2 2885:::Strain.9802501..replicate1 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.1 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.2 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.3 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.4 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.5 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.4 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.5min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN.20min...0.05.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration.rep1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.1 4062:::MTB1254.Day.0.rep.1 4068:::H37Rv.vs..H37Rv.delta.mprAB.mutant.rep.5 4084:::High.iron.wt.vs.high.iron.ideR.Complement.3b 4084:::High.iron.wt.vs.high.iron.ideR.KO.2b 4084:::High.iron.wt.vs.high.iron.ideR.KO.3a 4084:::High.iron.wt.vs.low.iron.wt.2b 4089:::MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Erythromycin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.30.min.rep.2 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.6 4101:::H37Rv.Day.0.vs.low.Oxygen.Day.4.rep.3 4101:::H37Rv.Day24.2 4101:::H37Rv.Day24.3 4101:::H37Rv.Day6.3 4101:::H37Rv.Day8.3 4107:::DIPED..100ug.mL..DMSO..12h..2 4107:::DIPED.10ug.mL.vs.DMSO.12h.1 4107:::DIPED.5ug.mL.vs.DMSO.12h.1 4107:::EMB..10ug.mL..DMSO..12h 4107:::EMB.10ug.mL.vs.DMSO.12h.2 4107:::EMB.10ug.mL.vs.DMSO.12h.4 4107:::pH4.8vspH6.8..4h. 4107:::pH4.8vspH6.8..4h.A 4107:::pH4.8vspH6.8..4h.B 4107:::pH4.8vspH6.8..4h.C 4107:::pH5.2vspH6.8..2h. 4107:::pH5.6vspH6.8..4h. 4107:::Rif.5ug.mL.vsDMSO.2.5hA 4107:::UV.20J.vs.ctrl.8h.1 4107:::UV.40J.vs.8h.2 4107:::X.109..0.1ug.mL..vs.DMSO..12h..GEO.acc.GSM28050. 4107:::X.109..10ug.mL..DMSO..12h..replicate.2..GEO.acc..GSM28054. 4107:::X.109..10ug.mL..vs.DMSO..12h..replicate.1..GEO.acc..GSM28053. 4107:::X0.12mg.mL.BZA.pH5.6..2h. 4107:::X0.12mg.mL.BZA.pH5.6..4h..1 4107:::X0.12mg.mL.BZA.pH5.6..4h..2 4107:::X0.12mg.mL.Nam.pH5.6..2h..2 4107:::X0.12mg.mL.Nam.pH5.6..4h..2 4107:::X0.12mg.mL.PZA.pH5.6..2h. 4107:::X0.1mM.GSNOvsDMSO..6h.A 4107:::X0.1mMGSNO.5ug.mLKCNvsDMSO.6h.A 4107:::X0.2mg.mL.AmpvsEtOH..6h 4107:::X0.2ug.mL.INH.EtOH..6h 4107:::X0.2ug.mL.Mtmvsctrl..4h. 4107:::X0.4mM.NaN3.DMSO 4107:::X0.4ug.mL.INHvsEtOH..6h 4107:::X0.4ug.mL.PA824.DMSO..6h..2 4107:::X0.5mM.DNP.DMSO..6h 4107:::X0.5ug.mL.CeruleninvsDMSO..6hA 4107:::X0.5ug.mL.CervsEtOH..6h 4107:::X0.5ug.mLRifapentinevsEtOH.6hA 4107:::X100ug.mL.Cephalexin.Ctrl..6h 4107:::X100uM.DipyridylvsCtrl..6hA 4107:::X10ug.mL.LevovsEtOH..6h 4107:::X10ug.mL.TriclosanvsDMSO..6hA 4107:::X10ug.mLchlorpromazinevsctrl.6hA 4107:::X12ug.mLEthionamidevsEtOH.6hA 4107:::X150uM.Deferroxaminevsctrl..6hA 4107:::X1mM.DNP.DMSO..6h..1 4107:::X1mM.DNP.DMSO..6h..2 4107:::X1ug.mL..109vsDMSO..6h 4107:::X1ug.mL..109vsDMSO..6hA 4107:::X1ug.mL..241vsDMSO..6hA 4107:::X1ug.mL..59vsDMSO..6h 4107:::X1ug.mL..59vsDMSO..6hA 4107:::X20mJ.UVvsctrl..6h. 4107:::X20ug.mL.Prcp.6778.DMSO..6h..1 4107:::X20ug.mLProcept6778vsDMSO.6h 4107:::X20ug.mLProcept6778vsDMSO.6hA 4107:::X20ug.mLProcept6778vsDMSO.6hB 4107:::X250uM.DeferroxaminevsDMSO..6h 4107:::X25J.UV.ctrl..2h. 4107:::X25J.UVvs.ctrl..6h. 4107:::X25ug.mL.AntimycinvsDMSO..6h 4107:::X2mM.DTTvsDMSO..6h.A 4107:::X2ug.mL.SMvsEtOH..6h 4107:::X40mJ.UV.ctrl..6h. 4107:::X40ug.mL.EtavsEtOH..6hA 4107:::X4d.Dubos.NRP.1vsDubos.aero.A 4107:::X50ug.mL.PA.21vsDMSO..6h 4107:::X60J.UV.ctrl..2h. 4107:::X7d.Dubos.NRP.1vsDubos.log.phase.A 4363:::H37Rv.hypoxia.1.day.rep.10 4363:::H37Rv.hypoxia.1.day.rep.2 4363:::H37Rv.hypoxia.1.day.rep.3 4363:::H37Rv.hypoxia.1.day.rep.7 4363:::H37Rv.hypoxia.12hr.rep.1 4363:::H37Rv.hypoxia.12hr.rep.3 4363:::H37Rv.hypoxia.4.day.rep.2 4363:::H37Rv.hypoxia.4.day.rep.5 4363:::H37Rv.hypoxia.4.day.rep.6 4363:::H37Rv.hypoxia.4.day.rep.7 4363:::H37Rv.hypoxia.4hr.rep.4 4363:::H37Rv.hypoxia.7.day.rep.2 4363:::H37Rv.hypoxia.7.day.rep.5 4363:::H37Rv.hypoxia.7.day.rep.6 4363:::H37Rv.hypoxia.7.day.rep.7 4363:::H37Rv.hypoxia.8hr.rep.1 4364:::H37dosR.mutant.hypoxia.1.day.rep.1 4364:::H37dosR.mutant.hypoxia.1.day.rep.2 4364:::H37dosR.mutant.hypoxia.1.day.rep.5 4364:::H37dosR.mutant.hypoxia.1.day.rep.6 4364:::H37dosR.mutant.hypoxia.12hr.rep.1 4364:::H37dosR.mutant.hypoxia.12hr.rep.4 4364:::H37dosR.mutant.hypoxia.4.day.rep.1 4364:::H37dosR.mutant.hypoxia.4hr.rep.1 4364:::H37dosR.mutant.hypoxia.4hr.rep.2 4364:::H37dosR.mutant.hypoxia.4hr.rep.4 4364:::H37dosR.mutant.hypoxia.8hr.rep.3 4365:::H37Rv.diamide.1h.rep.3 4366:::H37Rv.vs.H37.sigma.H.null.mutant.rep.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.0.4 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.2 4523:::H37Rv.sigB.null.mutant.control.vs.0.05..SDS.for.60.min.rep.6 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.5 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.3 4523:::H37Rv.wild.type.Vs.H37Rv.wild.type.rep.6 4575:::Extracted.Lung.Surfactant.30min.rep.3 4575:::Whole.Lung.Surfactant.30min.rep.2 4583:::X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.1 4583:::X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.1 4583:::X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.2 4583:::X20ug.ml.KCN.vs.DMSO.6hrs 4583:::X40ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.5 4599:::H37Rv.vs.SigE.mutant.24hrs.after.macrophage.infection.rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media..DS..rep.3 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2hrs..DS..rep.2 4615:::AA_10uM_10min_01 4615:::AA_30uM_1h_07 4615:::AA_30uM_24h.AA_60uM_1h_01 4615:::AA_30uM_2h_03 4615:::AA_30uM_2h_06 4615:::AA_30uM_30min_07 4615:::AA_3uM_2h_T0_01 4615:::aceatate.induction.1 4615:::aceatate.induction.3 4615:::Acetate.3mM.10m.07 4615:::Acetate.3mM.30m.04 4615:::Acetate.3mM.30m.05 4615:::Acetate.3mM.30m.07 4615:::Acetate.3mM.30m.08 4615:::CK.1.2h.for.AA.NA.and.LA.NA 4615:::CK.for.MDG.OA.Na.24h 4615:::L2A_30uM_2h_01 4615:::L2A_30uM_2h_03 4615:::L2A_30uM_2h_05 4615:::LAA_50uM_10min_02 4615:::MDGCy3.7H9Cy5.02 4615:::MTB1254.3524.1._OA_10min_04 4615:::MTB1254.Rv3524.2._PA50.OA30_2h_02 4615:::MTB1254vsMTB1254.0494.4. 4615:::OA_50uM_10min_01 4615:::OA_50uM_1h_07 4615:::OA_50uM_1h_10 4615:::OA_50uM_2h_02 4615:::OA_50uM_2h_04 4615:::OA_50uM_2h_08 4615:::OA_50uM_2h_09 4615:::PA_100uM_2h_03 4615:::PA_100uM_2h_04 4615:::PA_100uM_2h_T0_05 4615:::PA_10uM_2h_T0_01 4615:::PA_50uM_2h_T0_02 4615:::PA_50uM_30.min_04 4615:::PA_50uM_30min_03 4615:::PA_50uM_3d_04 4615:::Rv_OA30_30mim_03 4615:::Rv.MT90_100503_02 4615:::TBD1111 4615:::TBD625 4615:::TBD664 4615:::TBE057 4615:::Test_361.2 4615:::X7H9_MTB1254_OA50_10M_01 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.1 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.2 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.3 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.24hr.rep.3 4696:::H37Rv.wt.vs.dosS.null.nitric.oxide.treatment.1hr.rep.3 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak.4hr.rep.1 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.2 4703:::CDC1551.extra.vs.intracellular.in.resting.macrophages.rep.1 4704:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1 4729:::H37Rv.wild.type.vs.PepD.null.mutant.rep.3 4731:::X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.1 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.4hr.rep.2 4795:::CDC1551.ctrl.vs.ctrl.at.0.hr.rep.1 4799:::H37Rv.mouse.hallow.fiber..ctrl.vs.25mg.kg.Isoniazid.3rd.dose.6hrs.rep.1 4799:::H37Rv.O2.depleted..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.2 4815:::H37Rv.reaeration.for.6hrs.rep.4 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.3 Rohde_CellHostMicrobe2007:::CDC1551.ctrl..vs.24.hr.after.macrophage.infection Rohde_CellHostMicrobe2007:::CDC1551.in.ctrl.vs.100.nM.Concanamycin.A.treated.macrophages.for.2.hr Schnappinger_JEM2003:::MTB.in.NOS2.null.macrophages...IFNg.for.24hrs RV0140 NA NA NA NA NA NA -0.691353028463511 -0.0843113449345745 0.893700256306489 -0.0210778362336436 1.37005935518683 0.8220356131121 0.553082422770808 -0.0404694455685957 -0.0944287063267233 -0.580062053149872 1.17361392148928 0.256306488601106 -1.25455281262647 0.0944287063267233 0.661000944287063 1.92904357210306 -0.49912316201268 1.33549170376366 -0.0404694455685957 -0.175367597463915 -0.121408336705787 -0.0134898151895319 0.580062053149872 -0.0404694455685957 -0.0402681050433789 -0.0385423291129483 0.539592607581276 0.192711645564741 0.0385423291129483 0.309141598093439 -0.393452943028014 -0.75880210441117 -0.252934034803723 0.0999999999999995 -0.807820328210341 2.5489476375569 4.55673408437095 1.70191273030722 2.07837268908486 -0.239493095756182 -0.268818780950817 -0.112415126579433 -0.493649034109682 -0.786905886056028 -0.581626089693586 1.13881410839164 1.43207096033799 1.53959847271831 1.13881410839164 1.85240578146108 0.48387380571147 -1.17791502198449 0.190616953765125 0.171066496968702 -0.16129126857049 -0.718479287268547 -0.28836923774724 2.06746080622174 2.55622222613231 2.87880476327329 1.77420395427539 2.95700659045899 1.57869938631116 -0.083089441384798 0.86510771324172 -0.405671978525778 -0.552300404498951 0.591401318091797 1.6080250715058 -0.562075632897163 0.718479287268547 0.41544720692399 -0.591401318091797 -0.444772892118624 -1.26589207756839 -0.0342132993937404 -0.180841725366913 -0.503424262507894 4.50149267737641 -0.307919694543663 -1.05083705280774 -0.200392182163336 4.81429998611918 4.71654770213706 -1.17791502198449 -0.943309540427412 NA -0.777130657657816 -0.747804972463182 0.210167410561548 -0.366571064932932 -0.532749947702528 -0.200392182163336 -0.268818780950817 -0.366571064932932 -0.347020608136509 -0.131965583375856 -0.855332484843508 0.650052688481066 -0.141740811774067 0.219942638959759 -0.454548120516836 1.58847461470937 -0.00488761419910577 -0.112415126579433 0.141740811774067 -0.619305151883056 -1.95602320248213 -0.913628392381933 -0.245269367082398 -1.25087377212023 -0.662227291122475 1.08531694933961 1.79659811387857 1.28766417718259 -0.766466772132494 0.0674490759476595 -1.66783169616031 1.62490955692089 1.74754424046209 2.07252615184627 -0.674490759476595 0 1.21843492034482 -0.674490759476595 -0.747016647592358 0.0435155328694578 -0.0290103552463052 -2.07424040011082 -1.8349049693288 0.0652732993041866 0.275598374839899 0.130546598608373 0.802411420756639 NA -0.9 0 1.41978441635681 0.00372646828440108 -0.599961393788574 -1.30799036782478 0.0613173417705994 -1.07305348098549 0.0586513703892691 -0.371458679132038 0 6.41254982922676 -0.156403654371384 1.34898151895319 0.722983559177527 -0.811152285906493 -2.29238689495313 -0.9535903840876 -0.325616228712839 -0.860557175883932 -0.976848686138517 -0.883815477934849 -1.11639849844402 -0.139549812305502 NA -0.627974155374761 -0.372132832814673 -0.325616228712839 -0.372132832814673 -0.441907738967424 -0.348874530763756 0.372132832814673 0.302357926661922 -1.11639849844402 -2.32583020509171 NA 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