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[+] Show/hide bicluster #108 rows and columns.
bicluster 108
Mycobacterium tuberculosis H37Rv
4x102
[+] Show/hide bicluster #108 rows (genes).
bicluster 108 genes
Mycobacterium tuberculosis H37Rv
4
[+] Show/hide bicluster #108 rows (short gene names).
bicluster 108 short names
Mycobacterium tuberculosis H37Rv
4
short_name
[+] Show/hide bicluster #108 rows (long gene names).
bicluster 108 long names
Mycobacterium tuberculosis H37Rv
4
long_name
[+] Show/hide bicluster #108 rows (NCBI RefSeq gene IDs).
bicluster 108 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
8
[+] Show/hide bicluster #108 gene upstream sequences.
bicluster 108 upstream sequences
Mycobacterium tuberculosis H37Rv
4
upstream
[+] Show/hide bicluster #108 columns (arrays; conditions).
bicluster 108 arrays
Mycobacterium tuberculosis H37Rv
102
[+] Show/hide bicluster #108 ratios.
bicluster 108 ratios
Mycobacterium tuberculosis H37Rv
4x102
GENES 2867:::H37Ra..7H9.shake.replicate.1 2867:::H37Ra..Dubos.media.replicate.4 2867:::H37Ra..Youman.media.replicate.1 2867:::H37Ra..Youman.media.replicate.3 2867:::H37Ra..Youman.media.replicate.4 2885:::Strain.1006...replicate.3 2885:::Strain.1006...replicate.4 2885:::Strain.1843...replicate.2 2885:::Strain.9802501..replicate1 2885:::Strain.9802826..replicate.3 2885:::Strain.9802826..replicate.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.4 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.05.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.01.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.3 4084:::High.iron.wt.vs.high.iron.ideR.Complement.2a 4084:::High.iron.wt.vs.high.iron.ideR.KO.1b 4084:::High.iron.wt.vs.low.iron.wt.1a 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.2 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.24.hr.rep.4 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.2.hr..ref..rep.3 4089:::MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.4 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.2 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.3 4100:::H37Rv.0.2..Oxygen..2h..2 4101:::H37Rv.Day6.2 4101:::H37Rv.Day8.1 4101:::H37Rv.Day8.2 4101:::NRP.Day14..1 4101:::NRP.Day14..8 4101:::NRP.Day20..2 4101:::NRP.Day30..1 4101:::NRP.Day8..2 4107:::pH4.8vspH6.8..11h. 4107:::pH5.2vspH6.8..10.5h. 4107:::pH5.6vspH6.8..2h. 4107:::X.241..0.1ug.mL..DMSO..12h..1..GEO.acc.GSM28046. 4107:::X0.12mg.mL.PZAvspH5.6..11h. 4107:::X0.2ug.mL..111891.DMSO..5.5h..3 4107:::X0.2ug.mL.Mtmvsctrl..4h.B 4107:::X0.2ug.mL.RifvsDMSO..6hA 4107:::X1.2mg.mL.PZAvspH5.6..16h. 4107:::X1.2mg.mL.PZAvspH5.6..4h.A 4107:::X1.2mg.mL.PZAvspH5.6..6h. 4107:::X10ug.mL..59.DMSO..6h 4107:::X10ug.mL.Amikacin.EtOH..6h 4107:::X10ug.mL.capreomycinvsEtOH..6h 4107:::X10ug.mL.OfloxvsDMSO..6hA 4107:::X10ug.mL.RoxvsEtOH..6h 4107:::X1mM.DTNBvsDMSO..6h 4107:::X1ug.mL..111895vsDMSO..6h 4107:::X24ug.mL.cltrmazole.DMS..6h..3 4107:::X24ug.mL.Econazole.DMSO..6h..2 4107:::X25ug.mL.CPZvsDMSO..6h.A 4107:::X25ug.mLCPZ.0.1mMGSNO.DMSO..1 4107:::X2ug.mL..121940vsDMSO..6h 4107:::X50uM.NigericinvsDMSO..6h.A 4107:::X5ug.mL.CFZ.0.1mM.GSNO.DMSO..2 4396:::Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.5.1 4583:::X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.1 4583:::X0.13mg.ml.TLM.vs.DMSO.6hrs.rep.2 4583:::X0.32ug.mL.Cerulenin.vs.Ethanol.6hrs.rep.1 4583:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.1 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.2 4615:::aceatate.induction.3 4615:::Acetate.3mM.10m.03 4615:::CK.MDG.AA.Na.2h 4615:::ETYA_30uM_1h_01 4615:::L2A_30uM_2h_03 4615:::MDG_1254.pMV261_04 4615:::MTB1254.0485.14._01 4615:::MTB1254.fadA._01 4615:::OA_50uM_30min_08 4615:::PA_100uM_24h_01 4615:::PA_300uM_24h_T0_01 4615:::PA_50uM_12h_02 4615:::PA_50uM_1h_04 4615:::PA_50uM_30.min_04 4615:::PA_50uM_30min_01 4615:::Starvation_1254_6h_02 4615:::Starvation_1254_6h_08 4615:::Starvation_OA50_6h_03 4615:::TBD098 4615:::Test.G.OA 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.24hr.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.4850.03_EAI.rep.2 4729:::H37Rv.wild.type.vs.PepD.null.mutant..DS..rep.2 4731:::X10ug.ml.capreomycin.vs.Ethanol..6hrs 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.1hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.1hr.rep.1 4799:::H37Rv.nutrient.starved..ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.1 4860:::M..bovis.nadABC.null.nicotinamide.starvation.rep.2 Provvedi_Microbiology2009:::H37Rv.Control.vs.subinhibitory.conc..5.ug.ml..vancomycin.DS.rep.2 Raghavan_Nature2008:::espR.mutant..R...rep2
RV1498C -0.275928037967698 -0.245269367082398 0.429221392394197 1.10371215187079 0.153293354426499 -0.55 1.35 -0.25 0.95 0.65 0.6 -0.861849303775649 0.524603924037352 0.412188797457919 0.412188797457919 0.786905886056028 0.412188797457919 0.0374717088598109 NA NA NA 0.861849303775649 2.02347227842979 -0.487132215177541 -0.0749434177196217 0.936792721495271 -0.112415126579433 -0.224830253158865 -1.725 -0.025 NA -0.144533734173556 0.385423291129483 0.505868069607446 0.192711645564741 -0.0722668670867781 1.30080360756201 1.85484958856064 -0.819024493650151 0.569101578308377 -0.653412923242952 1.11712532038311 0.695568595710239 0.632335087009308 -0.442634560906516 1.24359233778497 -1.20143666531769 1.41221502765412 0.0210778362336436 0.590179414542021 -2.21317280453258 -0.674490759476595 1.4965263725887 0.316167543504654 0.0632335087009308 -0.0843113449345744 0.252934034803723 -0.800957776878457 -0.906346958046675 -1.6440712262242 -2.9508970727101 -1.1592809928504 0.674490759476595 -2.92981923647646 0.05 0.35 1.06692174680843 1.01786787339195 -0.600909949351876 0.846179316434274 0.0481779113911854 0.524603924037352 0.262301962018676 -0.149886835439243 0.861849303775649 0.0374717088598109 0.749434177196217 -0.337245379738298 -4.42166164545768 -0.487132215177541 1.386453227813 -1.42392493667281 -1.64875518983168 0 -0.187358544299054 -0.262301962018676 1.76117031641111 0.711962468336406 0.337245379738298 -1.16162297465414 0.374717088598108 -0.119027781084105 0.312568888537934 NA 0.745489786789921 0.508462264836203 0.612230073986448 0.0518839045751228 -0.764422860740141 0.749127032041628 -0.0181786125 NA
RV2078 NA NA NA NA NA NA NA NA NA NA NA 0.505868069607446 0.112415126579433 -1.68622689869149 0.843113449345744 0.75880210441117 0.674490759476595 -1.03983992085975 NA 0.0632335087009308 0.0210778362336436 1.37307047464878 0.168622689869149 -0.36133433543389 0.313156424042705 0.0240889556955926 -0.313156424042705 -1.42124838603997 -0.3 -0.25 0.0210778362336436 NA NA NA NA NA NA NA NA -0.174062131477831 0.0217577664347289 0.674490759476595 0.478670861564035 0.543944160868222 -2.00171451199506 0.892068423823884 -1.89292567982141 NA 0.609217460172409 1.47952811756156 -0.848552890954426 NA NA NA NA -0.282850963651475 NA -0.739764058780782 -0.892068423823884 -0.826795124519697 -1.82765238051723 NA 0.718006292346053 NA NA NA 2.20742430374158 NA NA NA 0.674490759476595 NA 0.542882806407991 NA NA NA 0.164509941335755 -0.641588771209444 -2.59925707310493 -0.608686782942293 1.56284444268967 NA -1.76025637229258 NA NA NA 1.06931461868241 1.28317754241889 0.263215906137208 -0.263215906137208 NA -1.11823468018488 0.756745730144473 NA NA NA NA NA -0.5 0.812008292962115 NA 0.32295532127481
RV2807 NA -0.51042543960391 NA NA NA -0.178946528024403 0.784611699799305 0.151416292943725 NA -0.013765117540339 0.646960524395918 -0.85198832775991 0.177497568283315 -1.49097957357984 0.177497568283315 0.354995136566629 0.745489786789921 NA 1.31439224923644 -0.484249776034479 0.103767809150245 2.02347227842978 0.265708481005931 -0.470099620241263 0.797125443017794 1.57381177211206 -0.224830253158865 0.102195569617666 -0.957341723128071 -0.478670861564035 NA -0.0750000000000001 0.975 0.325 0.275 -0.0750000000000001 0.725 3.075 -0.425 0.462885815327075 -0.595138905420525 0.515787051364455 0.780293231551355 1.28285497390647 -1.04479941173826 1.54736115409337 -4.06016986586892 1.60026239013075 0.119027781084105 0.330632725233625 -1.7325154802242 NA 1.22995373786909 1.22995373786909 0.648040141457905 -0.436435197308385 0.330632725233625 -0.145478399102795 -0.859645085607425 -1.15060188381302 -3.98081801181285 -2.73763896493442 0.700941377495285 -2.94924390908394 0.214610696197099 0.55 0.781796107575145 1.48694553793704 -0.0766466772132494 0.628502753148646 0.544780998038788 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.442634560906516 0.636598020180157 -0.126467017401862 1.08667955693451 NA NA NA -0.780989300446584 NA NA 0.933910282352209
RV2894C -0.05 -0.35 0.25 0.05 NA -0.9 0 -0.4 0.5 0.25 NA -0.800957776878457 1.39113719142048 -0.126467017401862 0.463712397140159 0.843113449345744 0.716646431943882 0 NA NA NA 1.92711645564741 2.7557765315758 -1.36825268350966 NA 0.55886377213775 0.115626987338845 -0.982829392380182 -0.4030493562726 -0.666265262409807 -0.325 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.175954111167807 NA NA NA NA NA 1.18684431715593 0.758802104411169 0.69135302846351 NA 1.01173613921489 NA 0.640766221502765 -0.101173613921489 -3.97949548091191 NA NA NA -1.31525698097936 NA NA NA 1.39956832591393 1.19722109807096 NA -0.320383110751383 NA NA 0.876837987319574 -0.887487841416573 NA NA NA NA NA NA NA 0.0643507085013006
[+] Show/hide bicluster #108 motif PSSM #1. bicluster 108 motif PSSM #1 Mycobacterium tuberculosis H37Rv 7x4
POSITION A C G T
1 1 0 0 0
2 0 0 1 0
3 0 1 0 0
4 0 1 0 0
5 0 0 1 0
6 1 0 0 0
7 0 1 0 0 [+] Show/hide bicluster #108 motif PSSM #2. bicluster 108 motif PSSM #2 Mycobacterium tuberculosis H37Rv 11x4
POSITION A C G T
1 0 0 0 1
2 0 0 0 1
3 0 1 0 0
4 0.666667 0 0.333333 0
5 0.333333 0 0.666667 0
6 0 1 0 0
7 1 0 0 0
8 0 0.333333 0 0.666667
9 0 1 0 0
10 0 0 1 0
11 1 0 0 0 |