|
[+] Show/hide bicluster #114 rows and columns.
bicluster 114
Mycobacterium tuberculosis H37Rv
7x239
[+] Show/hide bicluster #114 rows (genes).
bicluster 114 genes
Mycobacterium tuberculosis H37Rv
7
[+] Show/hide bicluster #114 rows (short gene names).
bicluster 114 short names
Mycobacterium tuberculosis H37Rv
7
short_name
[+] Show/hide bicluster #114 rows (long gene names).
bicluster 114 long names
Mycobacterium tuberculosis H37Rv
7
long_name
[+] Show/hide bicluster #114 rows (NCBI RefSeq gene IDs).
bicluster 114 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
14
[+] Show/hide bicluster #114 gene upstream sequences.
bicluster 114 upstream sequences
Mycobacterium tuberculosis H37Rv
7
upstream
[+] Show/hide bicluster #114 columns (arrays; conditions).
bicluster 114 arrays
Mycobacterium tuberculosis H37Rv
239
[+] Show/hide bicluster #114 ratios.
bicluster 114 ratios
Mycobacterium tuberculosis H37Rv
7x239
GENES 2867:::H37Ra..Sauton.s.media.replicate.2 2867:::H37Ra..Sauton.s.media.replicate.4 2867:::H37Ra..Youman.media.replicate.1 2867:::H37Ra..Youman.media.replicate.4 2867:::H37Rv..Dubos.media.replicate.2 2867:::H37Rv..Dubos.media.replicate.3 2885:::H37Ra..7H9.roll.replicate.1 2885:::H37Ra..7H9.roll.replicate.3 2885:::Strain.1006...replicate.1 2885:::Strain.1006...replicate.4 2885:::Strain.1254...replicate.1 2885:::Strain.1254...replicate.2 2885:::Strain.1843...replicate.3 2885:::Strain.1843..replicate.4 2885:::Strain.9800608...replicate.3 2885:::Strain.CDC1551..replicate.1 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.2 4060:::H37Rv.0.05..SDS.exposure.for.1h.rep.6 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.4 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.20min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.2hr.Hypoxia.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.01.mM.DETA.NO.rep.1 4062:::MTB1254.Day.0.rep.3 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.2 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.4 4068:::H37Rv.delta.mprAB.mutant.vs..H37Rv.delta.mprAB.mutant.SDS.treated.rep.1 4082:::H37Rv.wild.type.Vs.Rv3676.null.2 4082:::Rv3676.null.Vs.H37Rv.wild.type.2 4084:::High.iron.wt.vs.high.iron.ideR.KO.2b 4084:::High.iron.wt.vs.low.iron.wt.3b 4089:::H37Rv.whiB7.null.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.2 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.6 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.with.whiB7.over.expression.rep.5 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.1 4089:::MTB1254.control.vs..25.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..100.ug.ml.Erythromycin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..25.ug.ml.Erythromycin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Erythromycin.for.15.min.rep.1 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.2 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.6 4100:::H37Rv.0.2..Oxygen..2h..2 4100:::H37Rv.0.2..Oxygen..2h..6 4101:::H37Rv.Day24.2 4101:::NRP.Day12..2 4101:::NRP.Day14..4 4101:::NRP.Day14..8 4101:::NRP.Day14..9 4107:::Palmitate.Glucose..1 4107:::PBS.Tw.DMSOvs7H9..6h 4107:::pH4.8vspH6.8..2h.A 4107:::pH4.8vspH6.8..4h. 4107:::pH4.8vspH6.8..4h.C 4107:::pH5.2vspH6.8..2h. 4107:::pH5.2vspH6.8..5.5h. 4107:::pH5.2vspH6.8..5h. 4107:::pH5.6vspH6.8..11h. 4107:::pH5.6vspH6.8..4h.B 4107:::pH5.6vspH6.8..5h. 4107:::Succinate.7H9.based.medium..1 4107:::X.109..0.1ug.mL..vs.DMSO..12h..GEO.acc.GSM28050. 4107:::X.241..1ug.mL..DMSO..12h..1 4107:::X0.12mg.mL.BZA.pH5.6..4h..1 4107:::X0.12mg.mL.BZAvspH5.6..5h. 4107:::X0.12mg.mL.BZAvspH5.6..7h. 4107:::X0.12mg.mL.Nam.pH5.6..2h..2 4107:::X0.12mg.mL.Nam.pH5.6..4h..1 4107:::X0.12mg.mL.NamvspH5.6..4h. 4107:::X0.12mg.mL.NamvspH5.6..5.5h. 4107:::X0.1mg.mL.TriclosanvsEtOH..6h 4107:::X0.2mg.mL.TLMvsEtOH..6h 4107:::X0.2mg.mL.TLMvsEtOH..6hA 4107:::X0.2mM.NaN3.DMSO 4107:::X0.2ug.mL.RifvsDMSO..6hA 4107:::X0.4mM.NaN3vsDMSO..4h 4107:::X0.4ug.mL.PA824.DMSO..6h..3 4107:::X0.4ug.mL.PA824.DMSO..6h..4 4107:::X0.5mM.DNP.DMSO..6h 4107:::X0.5ug.mL.CeruleninvsDMSO..6hC 4107:::X1.2mg.mL.NamvspH5.6..10.5h. 4107:::X100ug.mL.TriclosanvsEtOH..6h 4107:::X100ug.mL.TriclosanvsEtOH..6hA 4107:::X10ug.mL..59vsDMSO..6hA 4107:::X10ug.mL.ChlorprovsEtOH..6h 4107:::X10ug.mL.EconazolevsEtOH..6hA 4107:::X10ug.mL.PA.1vsDMSO..6hA 4107:::X13ug.mL.clfzine.DMSO..6h..2 4107:::X1ug.mL..111895vsDMSO..6hA 4107:::X1ug.mL..241vsDMSO..6hA 4107:::X20ug.mL.Procept6776vsDMSO..6h 4107:::X250uM.DeferroxaminevsDMSO..6h 4107:::X2mM.DTTvsDMSO..6h.A 4107:::X2mMb.mercaptoethanolvsDMSO.6h 4107:::X2ug.mL..111895vsDMSO..6h 4107:::X2ug.mL.PA824.DMSO..6h..2 4107:::X40ug.mLProcept6778vsDMSO.6h 4107:::X40ug.mLProcept6778vsDMSO.6hA 4107:::X50ug.mL.PA.1vsDMSO..6h 4107:::X50ug.mL.TriclosanvsEtOH..6h 4107:::X50ug.mL.VerapamilvsDMSO..6h 4107:::X60J.UVvsctrl..6h. 4364:::H37dosR.mutant.hypoxia.4hr.rep.4 4365:::H37Rv.diamide.1h.rep.2 4365:::H37Rv.diamide.1h.rep.3 4365:::H37Rv.diamide.1h.rep.6 4365:::H37Rv.sigma.H.null.mutant.diamide.1h.rep.2 4366:::H37Rv.vs.H37.sigma.H.null.mutant.rep.1 4366:::H37Rv.vs.H37.sigma.H.null.mutant.rep.2 4366:::H37Rv.vs.H37.sigma.H.null.mutant.rep.3 4396:::H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4396:::H37Rv.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3 4396:::Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4396:::Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.3 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD.0.3.3 4575:::Purified.Surfactant.Lipids.30min.rep.2 4583:::X0.2mg.ml.TLM.vs.Ethanol.6hrs.rep.1 4583:::X0.4ug.ml.PA.824.vs.DMSO.6hrs.rep.3 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4 4599:::H37Rv.wild.type.vs.sigE.mutant.in.7H9.media..DS..rep.2 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2.hrs.rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2hrs..DS..rep.1 4599:::H37Rv.wild.type.vs.sigE.mutant.in.RPMI.media.for.2hrs..DS..rep.2 4615:::AA_30uM_10m_01 4615:::AA_30uM_1h_07 4615:::AA_30uM_2h_07 4615:::aceatate.induction.1 4615:::C2_ceramide_25uM_1h_01 4615:::C2_ceramide_5uM_1h_01 4615:::Glucose_20mM_1h.OA_50uM_10min 4615:::L2A_30uM_1h_06 4615:::L2A_30uM_2h_01 4615:::L2A_30uM_2h_04 4615:::LAA_50uM_10min_02 4615:::LAA_50uM_30min_01 4615:::MTB1254.0485.1._AA_10m_01 4615:::MTB1254.0485.1._PA_10m_02 4615:::MTB1254.0485.14._01 4615:::MTB1254.3524.1._OA_10min_03 4615:::MTB1254.B4.1._OA_30MIN_01 4615:::MTB1254.B4.1._OA_30MIN_03 4615:::MTB1254.B4.1._OA_30MIN_04 4615:::MTB1254.B4.1._PA_10MIN_01 4615:::MTB1254.B4.1._PA_10MIN_02 4615:::MTB1254.B4.1._PA_30MIN_04 4615:::MTB1254.B4.1.Compl._PA_30MIN_03 4615:::MTB1254TA1_OA.30min_04 4615:::MTB1370_PA50_1h_02 4615:::MTB889_PA50_1h_03 4615:::OA_100uM_2h_T0_01 4615:::OA_50uM_10min_05 4615:::OA_50uM_2h_02 4615:::OA_50uM_2h_03 4615:::OA_50uM_2h_04 4615:::OA_50uM_2h_08 4615:::OA_50uM_4h_05 4615:::OA50um_10min.10mM_G_20min 4615:::PA_300uM_4h_T0_01 4615:::PA_50uM_10min_06 4615:::PA_50uM_10min_T0_01 4615:::PA_50uM_30.min_05 4615:::PA_50uM.AA_30uM_30min_02 4615:::Rv_OA30_30mim_01 4615:::Rv_TA_OA30_30mim_01 4615:::Starvation_1254_12h_03 4615:::Starvation_1254_6h_05 4615:::Starvation_1254_OA50_12h_03 4615:::Starvation_OA50_6h_04 4615:::Starvation_T0 4615:::TBD043 4615:::TBD1275 4615:::TBE055 4615:::TBE060 4615:::WM_1254.whiB4._10d_03 4615:::X2.2..Dipyridyl_0.2mM.Dpd.AA_50uM_01 4615:::X7H9Cy3.MDGCy5.01 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.3 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.1 4696:::H37Rv.wt.vs.dosS.dosT.null.rapid.anaerobic.dormancy.day.6.rep.1 4696:::H37Rv.wt.vs.dosS.dosT.null.rapid.anaerobic.dormancy.day.6.rep.3 4696:::H37Rv.wt.vs.dosS.null.nitric.oxide.treatment.1hr.rep.4 4696:::H37Rv.wt.vs.dosS.null.rapid.anaerobic.dormancy.day.6.rep.1 4696:::H37Rv.wt.vs.dosS.null.rapid.anaerobic.dormancy.day.6.rep.2 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak.4hr.rep.2 4696:::H37Rv.wt.vs.dosT.null.anaerobic.Gaspak24hr.rep.2 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.1 4696:::H37Rv.wt.vs.dosT.null.rapid.anaerobic.dormancy.day.6.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.10517.01_Afri2.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1500.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.4130.02_Haarlem.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.2 4703:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::Clinical.isolate.1500.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.9532.03_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.2 4731:::X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3 4731:::X5ug.ml.Rifampicin.vs.DMSO.2.5hrs 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.1 4795:::CDC1551.ctrl.vs.ctrl.at.0.hr.rep.1 4795:::CDC1551.ctrl.vs.ctrl.at.0.hr.rep.2 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.24.hr.rep.2 4802:::H37Rv.ctrl.vs.relE3.overexpression.24.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.6.hr.rep.1 4815:::H37Rv.reaeration.for.12hrs.rep.1 4815:::H37Rv.reaeration.for.12hrs.rep.3 4815:::H37Rv.reaeration.for.1hrs.rep.6 4815:::H37Rv.reaeration.for.24hrs.rep.5 4815:::H37Rv.reaeration.for.24hrs.rep.6 4815:::H37Rv.reaeration.for.4hrs.rep.8 4860:::CDC1551.nadABC.null.nicotinamide.starvation.rep.3 4860:::M..bovis.nadABC.null.nicotinamide.starvation.rep.1 4860:::M..bovis.nadABC.null.nicotinamide.starvation.rep.3 4928:::Mtb.Erdman.strain.2000.ppm.CO.rep.2 Maciag_JBacteriol2007:::H37Rv.wild.type.vs.H37Rv.FurB.null.rep.1 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.DS.rep.1 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.1 Schnappinger_JEM2003:::MTB.in.NOS2.null.macrophages.for.24hrs Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages.for.24hrs Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages.for.48hrs
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RV3379C NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -0.404694455685957 0.366152126573009 -1.37146454426908 -1.6637438733756 0.427177481001844 -0.809388911371914 -0.562075632897163 -1.21408336705787 0.876837987319574 0.96677008858312 -0.247313278474751 -2.0009892531139 -0.404694455685957 NA 1.05572466700684 -1.05572466700684 0.408244407051623 -1.43773030309485 -0.24849659559664 -0.85198832775991 -0.141998054626652 0.354995136566629 0.532492704849943 -0.638991245819932 -0.425994163879955 0.603491732163269 0.461493677536618 0.212997081939977 0.177497568283315 0.674490759476595 -1.34898151895319 1.66638893517747 NA 1.575 -0.475 -0.65575490504669 0.430924651887825 -0.0562075632897163 0.0187358544299054 NA 1.61564065642068 2.11758726812419 0.925464065328352 -1.05095071825423 -1.05095071825423 NA 0.486260780087778 2.74502053275359 0.454889116856308 -0.32940246393043 1.99210061519832 0.3607741271619 -0.674490759476595 -1.36466735056893 0.831349075633943 0.549004106550717 1.61564065642068 -1.64701231965215 0.32940246393043 0.454889116856308 0.925464065328352 -0.0470574948472044 -0.831349075633943 -0.643119096245126 -0.925464065328352 0.737234085939534 -0.831349075633943 -2.96462217537387 -2.87050718567946 1.70975564611509 -0.141172484541613 2.2117022578186 2.2117022578186 1.67838398288362 -0.0156858316157348 0.517632443319248 0.109800821310143 0.611747433013656 -0.925464065328352 -0.454889116856309 0.0470574948472043 -0.0784291580786738 0.0156858316157348 1.27055236087452 1.11369404471717 0.643119096245126 -0.956835728559821 -1.67838398288362 -1.0823223814857 0.109800821310143 1.45878234026333 0.423517453624839 -1.58426899318921 1.14370172259075 -0.25 -0.5 -0.1 0.1 NA NA NA -0.109376879915124 0 0.455736999646348 -1.16668671909465 1.20444778477963 0.0165858383477851 0.0809388911371914 -1.75367597463915 1.50195880460768 -0.709258324398069 0.820514532146786 0.0834421558115375 -1.12646910345576 -0.385423291129483 -0.409512246825076 -0.409512246825076 -1.3248925632576 0.578134936694224 0.770846582258966 0.554045980998632 1.300803607562 -1.10809196199726 0.891291360736929 -0.289067468347112 1.44533734173556 -0.313156424042705 NA -0.433601202520668 -0.216800601260334 -0.554045980998632 -0.0240889556955927 0.192711645564741 -0.770846582258966 -0.843113449345744 -0.554045980998632 0.313156424042705 -0.529957025303039 -0.529957025303039 0.867202405041337 NA NA NA NA -1.37307047464878 -1.56578212021352 -0.26497851265152 1.34898151895319 NA 1.56578212021352 0.457690158216261 0.433601202520668 -1.39715943034438 -1.85484958856064 -2.11982810121216 0.481779113911854 -2.48116243664605 1.44533734173556 -1.58987107590912 -1.25262569617082 2.11982810121216 1.58987107590912 1.92711645564741 1.18035882908404 1.3248925632576 1.46942629743115 1.03582509491049 -0.24356610758877 -0.226309399561226 -3.64313758901503 -1.4244179854736 -0.0399369528637458 -0.332807940531215 -0.146435493833734 NA 0.687803077097844 0.767676982825335 -1.13154699780613 0.952852025292333 0.33189227847261 -0.289067468347112 -0.695903164539344 -0.503191518974603 1.33827531642182 0.267655063284363 -0.546016329100101 -1.5952241771748 1.29545050629632 -0.867202405041337 1.24593431958871 -0.721330395551359 0.683858686691548 0.590179414542021 -0.666737992126289 0.542693714521399 -0.682243526826901 -0.868309943234237 0.0930332082036684 -0.255212719801955 1.3854404789249 0.208478962020038 0.355640582269477 0.919760126558993 -0.160593037970618 -1.21408336705787 -0.0449660506317731 1.18410599997002 NA NA NA NA NA NA -0.203462088602444 0.471028670874151 -0.877952848079039 -0.025 -2.173576945 0.809126332908311 0 0 -0.899321012635461 -0.44966050631773
[+] Show/hide bicluster #114 motif PSSM #1. bicluster 114 motif PSSM #1 Mycobacterium tuberculosis H37Rv 12x4
POSITION A C G T
1 0.714286 0 0.285714 0
2 0.857143 0 0.142857 0
3 0.285714 0.285714 0 0.428571
4 0.142857 0 0.857143 0
5 0 0.714286 0.285714 0
6 0.142857 0.142857 0 0.714286
7 0.428571 0.142857 0 0.428571
8 0.142857 0 0.142857 0.714286
9 0 0 1 0
10 0.142857 0.857143 0 0
11 0 0 1 0
12 1 0 0 0 [+] Show/hide bicluster #114 motif PSSM #2. bicluster 114 motif PSSM #2 Mycobacterium tuberculosis H37Rv 11x4
POSITION A C G T
1 0 0.142857 0.857143 0
2 0 0 0 1
3 0.428571 0.428571 0.142857 0
4 0 0 0.571429 0.428571
5 1 0 0 0
6 0.285714 0 0.571429 0.142857
7 0 0.428571 0.571429 0
8 0.142857 0.142857 0 0.714286
9 0 0 1 0
10 0.714286 0.142857 0 0.142857
11 0 1 0 0 |