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[+] Show/hide bicluster #126 rows and columns.
bicluster 126
Mycobacterium tuberculosis H37Rv
17x143
[+] Show/hide bicluster #126 rows (genes).
bicluster 126 genes
Mycobacterium tuberculosis H37Rv
17
[+] Show/hide bicluster #126 rows (short gene names).
bicluster 126 short names
Mycobacterium tuberculosis H37Rv
17
short_name
[+] Show/hide bicluster #126 rows (long gene names).
bicluster 126 long names
Mycobacterium tuberculosis H37Rv
17
long_name
[+] Show/hide bicluster #126 rows (NCBI RefSeq gene IDs).
bicluster 126 NCBI RefSeq IDs
Mycobacterium tuberculosis H37Rv
32
[+] Show/hide bicluster #126 gene upstream sequences.
bicluster 126 upstream sequences
Mycobacterium tuberculosis H37Rv
17
upstream
[+] Show/hide bicluster #126 columns (arrays; conditions).
bicluster 126 arrays
Mycobacterium tuberculosis H37Rv
143
[+] Show/hide bicluster #126 ratios.
bicluster 126 ratios
Mycobacterium tuberculosis H37Rv
17x143
GENES 2867:::H37Ra..7H9.shake.replicate.2 2867:::H37Ra..Sauton.s.media.replicate.3 2867:::H37Ra..Sauton.s.media.replicate.4 2885:::Strain.9800608...replicate.3 2885:::Strain.M3061a..replicate.4 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.5 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.2 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.3 4062:::H37.Rv3132.34.KO.0.days.vs.Rv3132.34.KO..complemented..hypoxia.4.day.rep.4 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.1 4062:::H37Rv.0.day.ctrl.vs.Rv3132.34.KO.hypoxia.4.day.rep.3 4062:::H37Rv.Ctrl.vs.0.05.mM.DETA.NO.40min.rep.2 4062:::H37Rv.ctrl.vs.Rv3132.3134.KO..0.05.mM.DETA.NO.40min.rep.3 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.005.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.1hr.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.1 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.KCN...2hr.hypoxia.rep.3 4062:::MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.1.0.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.1 4062:::MTB.strain.1254.Ctrl.vs.5.0.mM.DETA.NO.40min.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.2 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.005.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration..0.2..oxygen..2hr.rep.3 4062:::MTB1254.Day.0.rep.1 4062:::MTB1254.Day.0.rep.2 4062:::MTB1254.Day.0.vs.low.Oxygen.Day.4.rep.4 4082:::H37Rv.wild.type.Vs.Rv3676.null.2 4082:::H37Rv.wild.type.Vs.Rv3676.null.6 4082:::H37Rv.wild.type.Vs.Rv3676.null.7 4082:::Rv3676.null.Vs.H37Rv.wild.type.2 4082:::Rv3676.null.Vs.H37Rv.wild.type.6 4082:::Rv3676.null.Vs.H37Rv.wild.type.7 4084:::High.iron.wt.vs.high.iron.ideR.Complement.2a 4101:::H37Rv.Day14.3 4107:::pH4.8vspH6.8..5h. 4107:::pH4.8vspH6.8..6h. 4107:::pH5.2vspH6.8..10.5h. 4107:::pH5.2vspH6.8..5h. 4107:::pH5.6vspH6.8..5h. 4107:::X0.1mMGSNO.20ug.mLCPZvsDMSO.6hA 4107:::X0.1ug.mL.Mtmvsctrl..1.5h. 4107:::X0.2ug.mL.Mtmvsctrl..2h.B 4107:::X0.5ug.mL..111891vsDMSO.6hA 4107:::X0.5ug.mL.CeruleninvsDMSO..6hA 4107:::X0.5ug.mL.CeruleninvsDMSO..6hC 4107:::X10mM.Succinate.10mM.Gluc..1 4107:::X10ug.mL.clotrimvsEtOH..6h 4107:::X10ug.mL.menadionevsDMSO..6h 4107:::X10ug.mL.Nvb.DMSO..6h..3 4107:::X10ug.mLmdn.0.1mMGSNO.DMSO..2 4107:::X10ug.mLMethoxatinvsDMSO.6h 4107:::X2.5mM.Dinitrophenol.DMSO..6h 4107:::X20ug.mLProcept6778vsDMSO.6hA 4107:::X250uM.DeferroxaminevsDMSO..6h 4107:::X25ug.mL.TRZ.DMSO..6h 4107:::X2ug.mL..121940vsDMSO..6h 4107:::X40ug.mL.5CL.pH5.6..2h..2 4107:::X40ug.mL.EtavsEtOH..6hA 4107:::X5ug.mL.OfloxvsEtOH..6hA 4107:::X60ug.mL.ChlorprovsEtOH..6h 4363:::H37Rv.hypoxia.1.day.rep.10 4363:::H37Rv.hypoxia.1.day.rep.6 4363:::H37Rv.hypoxia.1.day.rep.9 4363:::H37Rv.hypoxia.12hr.rep.1 4363:::H37Rv.hypoxia.12hr.rep.3 4363:::H37Rv.hypoxia.4.day.rep.1 4363:::H37Rv.hypoxia.4.day.rep.3 4363:::H37Rv.hypoxia.4.day.rep.4 4363:::H37Rv.hypoxia.4.day.rep.5 4363:::H37Rv.hypoxia.4.day.rep.6 4363:::H37Rv.hypoxia.4.day.rep.7 4363:::H37Rv.hypoxia.4hr.rep.2 4363:::H37Rv.hypoxia.7.day.rep.2 4363:::H37Rv.hypoxia.7.day.rep.4 4363:::H37Rv.hypoxia.7.day.rep.6 4363:::H37Rv.hypoxia.7.day.rep.7 4364:::H37dosR.mutant.hypoxia.1.day.rep.1 4364:::H37dosR.mutant.hypoxia.1.day.rep.3 4364:::H37dosR.mutant.hypoxia.1.day.rep.4 4364:::H37dosR.mutant.hypoxia.1.day.rep.5 4364:::H37dosR.mutant.hypoxia.12hr.rep.3 4364:::H37dosR.mutant.hypoxia.12hr.rep.4 4364:::H37dosR.mutant.hypoxia.4hr.rep.1 4364:::H37dosR.mutant.hypoxia.4hr.rep.4 4364:::H37dosR.mutant.hypoxia.7.day.rep.1 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.1 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.2 4575:::Extracted.Lung.Surfactant.2hrs.rep.1 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep2 4583:::X12ug.ml.Ethionamide.vs.Ethanol.6hrs.rep.2 4583:::X20ug.ml.KCN.vs.DMSO.6hrs 4615:::AA_30uM_2h_03 4615:::aceatate.induction.2 4615:::L2A_30uM_30min_05 4615:::MDGCy3.7H9Cy5.02 4615:::MTB1254.3524.1._PA_12h_05 4615:::PA_100uM_4h_T0_01 4615:::PA_300uM_2h_T0_01 4615:::PA_50uM_2h_04 4615:::PA_50uM_30min_01 4615:::Starvation_1254_12h_02 4615:::Starvation_1254_24h_01 4615:::Starvation_1254_OA50_12h_01 4615:::Starvation_1254_OA50_12h_04 4615:::Starvation_1254_OA50_6h_01 4615:::Starvation_1254_PA50_24h_01 4615:::Starvation_1254_PA50_24h_02 4615:::Starvation_1254_PA50.OA30_24h_03 4615:::Starvation_1254_PA50.OA30_6h_04 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.4hr.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.2169.99_Uganda.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.5468.02_Afri2.rep.1 4703:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.1797.03_EAI.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.1 4731:::X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.3 4735:::BCG.wild.type.vs.BCG.with.empty.pMV361.at.OD.0.2.rep.3 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.2hr.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.4hr.rep.2 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.1 4795:::CDC1551.ctrl.vs.10.ug.ml.Thioridazine.6hr.rep.2 4795:::CDC1551.ctrl.vs.40.ug.ml.Thioridazine.2hr.rep.1 4795:::CDC1551.ctrl.vs.ctrl.at.0.hr.rep.2 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.2 4802:::H37Rv.ctrl.vs.relE2.overexpression.72.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.24.hr.rep.1 4815:::H37Rv.reaeration.for.1hrs.rep.5 4815:::H37Rv.reaeration.for.1hrs.rep.6 Raghavan_Nature2008:::espR.mutant..R...rep2 Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.24hrs Schnappinger_JEM2003:::MTB.in.Wild.type.macrophages...IFNg.for.48hrs
RV0072 1.03582509491049 -0.216800601260334 -1.08400300630167 -0.500428627998764 -1.00085725599753 -1.6637438733756 0.698579715172188 -0.216800601260334 0.144533734173556 -0.26497851265152 0.289067468347112 0.62631284808541 0.120444778477963 0.144533734173556 1.6380489873003 1.75849376577827 -1.9752943670386 -2.02347227842979 -1.25262569617082 -2.60160721512401 -1.68622689869149 0.0963558227823708 -3.34836484168738 -3.2760979746006 -1.08400300630167 -1.42124838603997 -0.891291360736929 -1.95120541134301 1.18035882908404 0.698579715172188 0.770846582258966 1.78258272147386 1.13218091769286 0.891291360736929 0.433601202520668 0.674490759476595 NA -0.246764912003632 0.98705964801453 NA 0.246764912003632 -0.98705964801453 0.6 -0.87287039461677 -1.51085930122757 -1.32200188857413 -0.78240928099285 -0.890327802509106 -1.29502225819506 -0.971266693646297 0.56657223796034 1.02522595440442 0.215837043032511 0.512612977202212 0.755429650613787 NA 0.0269796303790638 -0.323755564548766 NA -0.161877782274383 0.161877782274383 -1.91555375691353 0.539592607581276 0.188857412653447 -1.45690004046945 -2.91380008093889 1.10616484554162 -0.134898151895319 0.701470389855659 0.431674086065021 1.26962966489712 -1.11092595678498 0.674490759476595 1.39361693685973 0.798478031439205 1.130763920299 NA -0.297569452710263 -0.674490759476595 -0.624895850691551 1.02661461185041 0.421556724672872 NA -1.14068290205601 -0.848072940224248 -0.466192142579411 -2.78704672312027 NA 0.127262407448414 1.48260704677403 0.45178154644187 0.649038277986912 0.738121963200802 -0.699943240966278 -2.35435453779566 -1.2756673059666 0.777130657657816 0.0674490759476594 0.175367597463915 0.721007363578429 -9.97781157984343 -0.0172946348583742 3.06115036993224 0.190240983442117 0.812847838343589 -1.88511519956279 -2.09265081786328 -0.812847838343589 -1.6775795812623 1.47004396296181 -4.16800700086819 -4.44472115860218 -4.61766750718592 -2.99197183049874 -4.06423919171795 -3.33786452766623 -2.71525767276475 -1.71216885097905 -4.16800700086819 0.00607649332861798 0.400478888439228 -0.0632335087009308 0.800957776878457 1.23840926330129 -0.774005789563306 0.176915609043041 0.39539113486559 0.231541603999428 0.1 -0.4 0 1.05 1.65 -0.65 -2.2 -1.69871746831142 0.299773670878487 -0.949283291115208 -1.24106299743693 -0.107918521516255 1.225 0.25 -0.75
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RV0346C 0.656261279490741 -0.947932959264404 -2.00524279844393 -0.931439620229584 -1.25262569617082 -0.179864202527092 1.66105933303938 1.09730586243207 1.33891449269235 0.755026969563353 1.25837828260559 0.453016181738012 0.453016181738012 0.191273498956049 1.54025501790924 0.936233442258557 -4.35902237094576 -4.54022884364096 -1.036903704867 -1.74159554312613 -4.60063100120603 -0.151005393912671 -5.72813794242064 -3.35231974486129 -1.56038907043093 -1.15770801999714 -1.54025501790924 -0.151005393912671 0.291943761564496 0.191273498956049 0.473150234259701 1.21811017756221 1.07717180991038 0.775161022085042 1.09730586243207 1.45971880782248 -1.12415126579433 0.252934034803723 -0.365349161383156 1.12415126579433 -0.252934034803723 0.365349161383156 0.2 0.404694455685957 -1.60026239013075 0.304182107214935 -0.198379635140175 -0.489336433345765 -0.648040141457905 NA -0.092577163065415 1.25640435588778 1.09770064777564 0.436435197308385 1.09770064777564 NA 0.542237669383145 NA NA 0.859645085607425 NA NA 1.17705250183171 0.674490759476595 NA -3.45180565143905 0.171929017121485 0.013225309009345 1.09770064777564 -5.11819458661652 0.753842613532665 -0.583802926269658 1.00890214442718 1.13926590466215 0.510119061789022 1.34331352937776 -0.362751332827749 -0.277731489196245 -0.674490759476595 -0.782182561409833 0.71416668650463 0.918214311220239 NA -0.685826738627462 -0.702830707353763 -0.481779113911854 -2.44315541765967 -3.34247643029513 1.52884572148028 1.39394756958496 0.524603924037352 0.254807620246714 1.84360807590269 0 -4.57154848089692 -0.968220606345435 1.164040504258 -0.390494650223292 0.567992218506606 -0.0709990273133257 NA 0.854354962003687 2.0009892531139 0.584558658213049 0.831871936687801 -0.921804037951347 -0.314762354422411 -0.674490759476595 0.089932101263546 0.629524708844822 -5.48585817707631 -4.58653716444085 -2.11340437969333 -1.3264984936373 -2.20333648095688 -2.36071765816808 -1.48387967084851 -1.82112505058681 -2.85534421511759 -0.706231501099023 0.674490759476595 0.424679367077856 1.02422670883483 1.1948122025014 -1.09845637971903 0.308338632903586 1.00537301884247 0.674490759476595 -0.0435155328694577 -0.465719810114792 0.497838417708915 0.786905886056028 0.754787278461904 -1.36504082275025 -1.87893854425623 NA NA NA NA NA -1.2325 -0.5 -0.5
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RV3921C 0.984391919236112 -0.528654919589764 -1.42189943889661 -2.01259339521242 0.0761521825215514 -0.219412656697206 1.52384949363231 1.386453227813 1.56132120249212 1.02422670883483 1.13664183541426 -0.0999245569594955 0.524603924037352 0.387207658218045 1.52384949363231 1.67373632907155 -2.58554791132695 -2.96026499992506 -1.34898151895319 -2.07343455690953 -2.82286873410575 -1.13664183541426 -2.86034044296556 -2.61052905056682 -1.28652867085351 -1.93603829109023 0.349735949358235 -1.03671727845477 0.686981329096532 0.474641645557604 0.362226518978172 0.674490759476595 0.187358544299054 0.424679367077856 NA 1.66124575945161 -0.674490759476595 -0.579043953890285 0.687217000221437 0.674490759476595 0.579043953890285 -0.687217000221437 -0.4 -1.08173046331152 NA -2.19568268510466 -0.717543361145314 -1.8225601373091 -2.10957748176722 -0.789297697259846 0.444876883910095 1.79385840286329 1.19112197950122 0.401824282241376 0.243964742789407 0.459227751133001 0.0430526016687188 -1.95171794231525 -0.401824282241376 -1.01891157282635 0.73189422836822 -2.13827921621304 0.574034688916251 0.516631220024626 -3.18589252348519 -1.17677111227832 -0.11480693778325 0.344420813349751 0.961508103934721 -2.26743702121919 0.441394688186889 -0.183501162504662 1.22995373786909 1.09604748414947 -0.00495949087850438 0.853032431102753 -0.357083343252315 -0.763761595289674 -1.25475119226161 -1.130763920299 1.06629053887844 0.619936359813047 0.674490759476595 -1.32914355543917 NA -0.823275485831726 -0.666006598980034 -1.42109688317396 0.89507893238718 0.861142290400936 -0.18240945067606 0.589649154510986 1.46351768565676 -0.682974919973156 -2.17618716736788 -1.7676309558697 0.814040571782098 0.454889116856308 0.266659137467491 -0.240889556955927 -6.54256036692297 0.794605552260098 3.69583977795395 1.31202312117365 0.850043148929408 -0.591334364472631 -1.8294406900872 0.535896767803322 -0.609813563362401 0.110875193338618 NA -7.04057477700227 -4.6382789213322 -4.84155010911967 -4.78611251245036 -2.36533745789053 -2.4392542534496 -1.73704469563835 -1.25658552450434 -0.696248525911324 1.58426899318921 1.11369404471717 1.96072895196685 0.576127523719592 -1.72838257115878 -0.435608615495301 1.28340602844852 0.674490759476595 0.1 -0.366255734984603 0.772400708432875 0.779653297244451 0.598338576955044 -0.431529034288789 -0.852179185360214 -4.24622591761402 1.14970015819874 -0.229940031639748 -1.67873255691953 -1.19909468351395 -1.18838848098257 -0.44966050631773 -0.44966050631773
[+] Show/hide bicluster #126 motif PSSM #1. bicluster 126 motif PSSM #1 Mycobacterium tuberculosis H37Rv 8x4
POSITION A C G T
1 0.545455 0.454545 0 0
2 0.727273 0.272727 0 0
3 0.818182 0.181818 0 0
4 0.909091 0 0.090909 0
5 0 1 0 0
6 0.818182 0 0.090909 0.090909
7 0.727273 0.181818 0 0.090909
8 1 0 0 0 [+] Show/hide bicluster #126 motif PSSM #2. bicluster 126 motif PSSM #2 Mycobacterium tuberculosis H37Rv 13x4
POSITION A C G T
1 1 0 0 0
2 1 0 0 0
3 1 0 0 0
4 0 0 1 0
5 0 1 0 0
6 0 0 1 0
7 0.666667 0 0.333333 0
8 0 0 1 0
9 0 0 1 0
10 0.333333 0 0.666667 0
11 0 0 1 0
12 1 0 0 0
13 0 0 1 0 |