GENES 2867:::H37Ra..Dubos.media.replicate.3 2885:::H37Ra..7H9.roll.replicate.3 2885:::Strain.1254...replicate.1 2885:::Strain.1843...replicate.2 2885:::Strain.9700665..replicate.4 2885:::Strain.9802501..replicate.2 2885:::Strain.9802501..replicate.4 2885:::Strain.CDC1551..replicate.1 4060:::H37Rv.sigE.null.0.05..SDS.exposure.for.1h.rep.6 4060:::H37Rv.wild.type.Vs.H37Rv.sigE.null.mutant.rep.2 4062:::CDC1551.Ctrl.vs.0.05.mM.DETA.NO.40.min.rep.4 4062:::H37Rv.ctrl.vs.Rv3132.34.KO..complemented...0.05.mM.DETA.NO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.16hrs.rep.4 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs...0.5.mM.DNO.40min.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.24hrs.rep.3 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.2hrs.rep.2 4062:::MTB.strain.1254.Ctrl.vs.0.5.mM.DETA.NO.8hrs.rep.1 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.01.mM.DETA.NO.rep.3 4062:::MTB.strain.1254.Ctrl.vs.high.aeration...0.05.mM.DETA.NO.rep.1 4062:::MTB.strain.1254.Ctrl.vs.low.aeration...0.001.mM.DETA.NO.rep.3 4084:::High.iron.wt.vs.high.iron.ideR.Complement.3a 4084:::High.iron.wt.vs.high.iron.ideR.KO.3b 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.3 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.5 4089:::H37Rv.wild.type.vs..H37Rv.whiB7.null.rep.6 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.3 4089:::MTB1254.control.vs..0.5.ug.ml.Streptomycin.for.15.min.rep.5 4089:::MTB1254.control.vs..1.0.ug.ml.Erythromycin.for.24.hr..ref..rep.1 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.2.hr..ref..rep.3 4089:::MTB1254.control.vs..1.0.ug.ml.Streptomycin.for.24.hr..ref..rep.3 4089:::MTB1254.control.vs..100.ug.ml.Streptomycin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..0.5.ug.ml.Tetracyclin.for.30.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Erythromycin.for.30.min.rep.3 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.2.hr.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.2 4089:::MTB1254.ethanol.vs..1.0.ug.ml.Tetracyclin.for.30.min.rep.4 4089:::MTB1254.ethanol.vs..25.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.1 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.3 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.15.min.rep.4 4089:::MTB1254.ethanol.vs..5.0.ug.ml.Tetracyclin.for.30.min.rep.3 4089:::MTB1254.vs..MTB1254.rep2 4099:::H37.Rv3133c.DosR.mutant.2hr.rep.6 4099:::H37Rv.hypoxia.2hr.rep.3 4101:::H37Rv.Day24.3 4101:::H37Rv.Day6.3 4101:::H37Rv.Day8.2 4101:::H37Rv.Day8.3 4107:::DIPED..100ug.mL..DMSO..12h..3 4107:::Mtm.0.2ug.mL.vs.ctrl.8h.1 4107:::pH4.8vspH6.8..4h. 4107:::pH4.8vspH6.8..4h.C 4107:::pH4.8vspH6.8..5h. 4107:::pH5.2vspH6.8..2h. 4107:::pH5.6vspH6.8..16h. 4107:::UV.20J.vs.ctrl.8h.1 4107:::UV.40J.vs.ctrl.12h.1 4107:::WT.t.6h.WT.t.0h..2 4107:::X.241..10ug.mL..DMSO..12h..1 4107:::X.241..10ug.mL..DMSO..12h..2 4107:::X0.12mg.mL.NamvspH5.6..5.5h. 4107:::X0.12mg.mL.PZA.pH5.6..2.5h. 4107:::X0.12mg.mL.PZAvspH5.6..6h. 4107:::X0.1mMGSNO.10ug.mLmdvsDMSO.6h 4107:::X0.1mMGSNO.5ug.mLKCNvsDMSO.6h.A 4107:::X0.2mg.mL.AmpvsEtOH..6hA 4107:::X0.4mM.NaN3vsDMSO..4h.A 4107:::X0.4ug.mL.INHvsEtOH..6h 4107:::X0.5ug.mL..121940vsDMSO.6hA 4107:::X0.5ug.mL..124196vsDMSO..6h 4107:::X0.5ug.mLRifapentinevsEtOH.6hA 4107:::X1.2mg.mL.PZAvspH5.6..7h.A 4107:::X100ug.mLCephalexinvsEtOH.6h 4107:::X100ug.mLCephalexinvsEtOH.6hA 4107:::X10ug.mL.clotrimvsEtOH..6h 4107:::X10ug.mL.EMBvsDMSO..6hA 4107:::X10ug.mL.LevovsEtOH..6h 4107:::X10ug.mL.PA.21vsDMSO..6h 4107:::X10ug.mLmdn.0.1mMGSNO.DMSO..2 4107:::X12.5ug.mL.AntimycinvsDMSO..6h 4107:::X20mJ.UVvsctrl..6h. 4107:::X25ug.mL.AntimycinvsDMSO..6h 4107:::X4mM.H2O2.ctrl..2h...1 4107:::X4mM.H2O2.ctrl..4h...2 4107:::X4mM.H2O2vsctrl..2h. 4107:::X4mM.H2O2vsctrl..2h.A 4363:::H37Rv.hypoxia.1.day.rep.3 4363:::H37Rv.hypoxia.4hr.rep.5 4364:::H37dosR.mutant.hypoxia.1.day.rep.4 4364:::H37dosR.mutant.hypoxia.4hr.rep.2 4396:::Strain.27.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.2 4396:::Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.1 4396:::Strain.32.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2 4396:::Strain.49.cDNA.Cy3.vs.H37Rv.gDNA.Cy5..DS..rep.2 4396:::Strain.49.cDNA.Cy5.vs.H37Rv.gDNA.Cy3.rep.1 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC..OD.1.5.2 4489:::MTB1254.WT.vs.Rv3662c.3665c.KO.in.7H9OADC.Exp2..OD1.3 4523:::H37Rv.sigB.null.mutant.control.vs.5mM.Diamide.for.60.min.rep.1 4523:::H37Rv.wild.type.control.vs.0.05..SDS.for.60.min.rep.4 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.1 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.2 4523:::H37Rv.wild.type.control.vs.5mM.Diamide.for.60.min.rep.3 4523:::H37Rv.wild.type.vs.H37Rv.sigB.null.mutant.rep.1 4575:::Purified.Human.SP.A.Coated.2hrs.rep1 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep1 4575:::Purified.Human.SP.A.Uncoated.2hrs.rep3 4575:::Purified.Surfactant.Lipids.2hrs.rep.1 4575:::Purified.Surfactant.Lipids.30min.rep.2 4583:::X0.2ug.ml.Isoniazid.vs.Ethanol.6hrs.rep.1 4599:::H37Rv.grown.in.7H9.vs.H37Rv.4hrs.after.infection.in.macrophages.rep.4 4615:::AA_30uM_10.min_07 4615:::AA_30uM_1h_04 4615:::AA_30uM_1h_06 4615:::AA_30uM_1h_07 4615:::AA_30uM_24h_04 4615:::AA_30uM_4h_05 4615:::AA_30uM_4h_07 4615:::AA_30uM_4h_08 4615:::AA_3uM_10min_02 4615:::AA_60uM_2h_T0_01 4615:::Acetate.3mM.2h.02 4615:::Acetate.3mM.30m.07 4615:::Acetate.3mM.60m.01 4615:::CHP_25uM_24h_01 4615:::CHP25uM_24h.50uMOA_30min_01 4615:::CK_LA_2h.3 4615:::CK_OA_NA_0.05_2h 4615:::CK.1.2h.for.AA.NA.and.LA.NA 4615:::CK.4h.for.OA.NA.0.05mM 4615:::CK.AA0.03.2h.02 4615:::CK.for.MDG.OA.Na.24h 4615:::L2A_30uM_10min_04 4615:::L2A_30uM_10min_05 4615:::L2A_30uM_4h_03 4615:::MAPP_5uM_30m_01 4615:::MDA_1254.pMV261_02 4615:::MDG_1254.pMV261_03 4615:::MTB1248_PA50_1h_01 4615:::MTB1248_PA50_1h_02 4615:::MTB1254_Bottom_21D_01 4615:::MTB1254_Pellicle_10D_04 4615:::MTB1254_Pellicle_14D_04 4615:::MTB1254_Pellicle_21D_01 4615:::MTB1254_Pellicle_21D_02 4615:::MTB1254_Pellicle_21D_03 4615:::MTB1254_Pellicle_42D_02 4615:::MTB1254_Pellicle_56D_02 4615:::MTB1254.3524.1._PA_12h_03 4615:::MTB1254.3524.1._PA_12h_06 4615:::MTB1254.3524.1.T0_WtT0_01 4615:::MTB1254.B4.1._OA_30MIN_03 4615:::MTB1254.B4.1._PA_4h_02 4615:::MTB1254.B4.1._PA_4h_04 4615:::MTB1254.B4.1.Compl._OA_30MIN_03 4615:::MTB1254.B4.1.Compl._PA_30MIN_01 4615:::MTB1254.B4.1.Compl._PA_30MIN_03 4615:::MTB889_PA50_1h_01 4615:::OA_50uM_2h_01 4615:::OA_50uM_2h_06 4615:::OA_50uM_2h_10 4615:::OA_50uM_30min_05 4615:::OA_50uM_4h_03 4615:::OA50um_10min.10mM_G_20min 4615:::PA_100uM_24h_T0_01 4615:::PA_100uM_4h_T0_01 4615:::PA_10uM_10.min_01 4615:::PA_25uM_2h_T0_01 4615:::PA_50uM_10min_05 4615:::PA_50uM_1h_07 4615:::PA_50uM_24h_01 4615:::PA_50uM_24h_06 4615:::PA_50uM_24h_T0 4615:::PA_50uM_24h.PA_50uM_1h_01 4615:::PA_50uM_2h_01 4615:::PA_50uM_2h_03 4615:::PA_50uM_2h_04 4615:::PA_50uM_30.min_05 4615:::PA_50uM_30.min_07 4615:::PA_50uM_30min_02 4615:::PA_50uM_3d_02 4615:::PA_50uM_4h_04 4615:::PA_50uM_4h_06 4615:::PA_50uM_8h_04 4615:::PA_50uM.0.5.BSA_4h_01 4615:::PA_50uM.AA_30uM_2h_04 4615:::PA_50uM.AA_30uM_30min_01 4615:::PA_50uM.OA_10uM_24h_01 4615:::PA_50uM.OA_10uM_30min_04 4615:::PA_50uM.OA_30uM_24h_01 4615:::PA_5uM_2h_T0_01 4615:::Rv.MT71_100503_02 4615:::Rv.MT90_100703_01 4615:::Rv.MT96_100603_01 4615:::Rv.p0485.1._300uM.PA_10m 4615:::Starvation_1254_OA50_3d_02 4615:::Starvation_1254_OA50_6h_02 4615:::Starvation_1254_PA50_6h_03 4615:::Starvation_1254_PA50_6h_04 4615:::Starvation_1254_PA50.OA30_6h_01 4615:::Starvation_OA50_6h_03 4615:::Starvation_OA50_6h_04 4615:::TBD625 4615:::TBD662 4615:::TBD818 4615:::TBE285 4615:::Test_361.2 4615:::Test_361.3 4615:::Test.2 4615:::Test.G.OA 4615:::WT_WhiB4_OA_10min_01 4615:::WT_WhiB4_PA_10min_01 4615:::X2.2..Dipyridyl_1mM.Dpd.AA_50uM_01 4615:::X7H9_MTB1254_OA100_10M_01 4615:::X7h9.control.4h 4615:::X7H9Cy3.MDGCy5.01 4615:::X7H9Cy3.MDGCy5.02 4630:::H37Rv.wild.type.Cy3.vs.Rv0485.Tn.mutant.Cy5.rep.3 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.2 4630:::H37Rv.wild.type.Cy5.vs.Rv0485.Tn.mutant.Cy3..DS..rep.3 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.24.hrs.rep.1 4637:::H37Rv.control.vs.1mg.ml.cholesterol.for.3.hrs.rep.2 4696:::H37Rv.wt.vs.dosS.dosT.null.anaerobic.Gaspak24hr.rep.2 4696:::H37Rv.wt.vs.dosS.null.anaerobic.Gaspak.24hr.rep.1 4696:::H37Rv.wt.vs.dosS.null.rapid.anaerobic.dormancy.day.6.rep.2 4696:::H37Rv.wt.vs.dosS.null.rapid.anaerobic.dormancy.day.6.rep.3 4699:::CDC1551.Ctrl.vs.clinical.isolate.10514.01_Afri2.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.12954.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1797.03_EAI.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.1934.03_Beijing.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.2333.99_Uganda.rep.1 4699:::CDC1551.Ctrl.vs.clinical.isolate.947.01_EAI.rep.2 4699:::CDC1551.Ctrl.vs.clinical.isolate.9532.03_Haarlem.rep.1 4703:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.1934.03_Beijing.extra.vs.intracellular.in.resting.macrophages.rep.2 4703:::Clinical.isolate.2169.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.resting.macrophages.rep.1 4703:::H37Rv.extra.vs.intracellular.in.resting.macrophages.rep.2 4704:::Clinical.isolate.10514.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.10517.01_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.12954.03_Beijing.extra.vs.intracellular.in.activated.macrophages.rep.1 4704:::Clinical.isolate.2191.99_Uganda.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.4130.02_Haarlem.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::Clinical.isolate.5468.02_Afri2.extra.vs.intracellular.in.activated.macrophages.rep.2 4704:::H37Rv.extra.vs.intracellular.in.activated.macrophages.rep.1 4735:::BCG.wild.type.vs.BCG.with.pMFdosR.at.OD.0.4.rep.2 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.2hrs.rep.3 4799:::H37Rv.ctrl.vs.1ug.ml.Isoniazid.for.6hrs.rep.1 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.1 4802:::H37Rv.ctrl.vs.relE1.overexpression.72.hr.rep.2 4802:::H37Rv.ctrl.vs.relE3.overexpression.6.hr.rep.1 4802:::H37Rv.ctrl.vs.relE3.overexpression.72.hr.rep.2 4815:::H37Rv.reaeration.for.12hrs.rep.4 4815:::H37Rv.reaeration.for.4hrs.rep.5 4860:::M..bovis.nadABC.null.nicotinamide.starvation.rep.1 4928:::Mtb.Erdman.strain.2000.ppm.CO.rep.2 Milano_Tuberculosis2009:::H37Rv.wild.type.vs.H37Rv.Bif1.mutant.rep.3 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.1.hr.DS.rep.1 Provvedi_Microbiology2009:::H37Rv.Control.vs.400.ug.ml.vancomycin.for.4.hrs.rep.2 Raghavan_Nature2008:::ESPR..mutant..R...rep3 Raghavan_Nature2008:::espR.mutant.complemented.with.N.terminal.Flag.espR..RFL..rep2 Raghavan_Nature2008:::espR.mutant.complemented.with.WT.espR..R...rep2 Raghavan_Nature2008:::WT.rep2 RV0422C -0.532492704849943 -1.52304365043102 -0.696248525911324 0.348124262955662 0.78327959165024 -0.348124262955662 -1.52304365043102 -0.261093197216747 NA NA -0.974264430355082 -0.0374717088598108 -0.524603924037352 0.936792721495271 0.562075632897163 1.08667955693451 1.46139664553262 1.27403810123357 -1.386453227813 -0.861849303775649 -0.749434177196217 -0.0364589599717079 -0.473966479632202 -0.640766221502765 0.0337245379738298 -0.539592607581276 0.168622689869149 0.337245379738298 -3.30500472143532 -0.236071765816808 0.640766221502765 0.134898151895319 1.14663429111021 0.0337245379738298 0.269796303790638 0.708215297450425 1.11290975313638 -0.910562525293403 0.674490759476595 0.269796303790638 1.31525698097936 -0.337245379738297 -0.0337245379738297 -0.404694455685957 0.404694455685957 0.539592607581276 -0.202347227842979 1.2 -0.1 2.67869187334991 0.327609797460061 0.211982810121216 -0.905744734154285 -0.981077468329593 -0.398562721508897 0.245269367082398 0.245269367082398 -1.07305348098549 1.01173613921489 -1.01173613921489 -0.122634683541199 -0.306586708852998 NA 0.705149430361895 -0.245269367082398 0.306586708852998 -0.766466772132495 0.613173417705996 -0.275928037967698 -1.37964018983849 -0.122634683541199 0.827784113903094 0.643832088591295 0.0306586708852998 0.306586708852998 0.551856075935396 -0.214610696197098 0.275928037967698 0.122634683541199 0.643832088591295 0.521197405050096 0.0306586708852998 NA -0.797125443017794 NA 0.0919760126558993 NA 0.398562721508897 1.34898151895319 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POSITION A C G T 1 0.75 0.25 0 0 2 0 0 0.75 0.25 3 0 1 0 0 4 0 0 1 0 5 0.25 0 0.75 0 6 0 0.75 0 0.25 7 0 0 1 0 8 0.75 0 0.25 0 9 1 0 0 0 10 0 0 0.75 0.25 11 0 0.25 0.25 0.5 12 0 1 0 0 13 1 0 0 0 14 0 0 0 1 15 0 1 0 0 16 0 1 0 0 17 1 0 0 0 18 0 0 1 0 19 0.75 0 0.25 0 20 0 0 0 1